FvH4_5g25921

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018047
Physical Location & Seq
Reverse (-)
17393389 .. 17396273
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25921.t1

Sequence Viewer

Length: 1371 bp
ATGTCATTTGGCCCAGGGGTTCAGCATAATCAAAAGGAGGAGATCCAACAGTTGTTAGGAGTTGAAATAGTTCCCTTTCACAAAAGGTATTTGGGGTTACCAACGATGACAGGTAGAAATAAAAAAGAAATGTATAAAAGGCTGAATGACCAGTTGGATAGCCATTTATTTGGGTGGCAGAGCAAATTCCTCTCTAAAGCAGGTAACATGACACTTATAGCTCAGGCTGTTCCAACGTATACAATGAGCGTTTTCAGACTTCCTAAAGGGGTTCATAAGTCTTTCCAAGCAAATTTCACAAGATTCTGGTGGGGGAAGGGTGCAGGCAAAAAGTGTATTCACTGGTGTAAGTGGGAAAATTTGTGTCGTGGCAAAAGGGAAGGAGGGCTGGGATTCCGGGATCTAGAGGTGGACAAGGGGGCTTTGTTAATTTGGAGAGGTCTGGTTTGGGGTAAGGAGCTGTTAGAATTGGGAATGAGATGGCGAGTAGGGGATGGTTCTCAGATCCGGTTGAAGATTGATAAGTGGATTCCTCAGCCTTATTTTTTCAAGTTAAGGAGAGAGGTAGGAAGAATGATGAAGCCTCTGGAAGTCTTTCAGGAAGTGACTCTAGGATTTTTAAAGATGTCTAGGTTGTACAGTTATGGTCCCAAAACTATGCTCCAGGCTCTGTGGGATTGTCATTTGGTCAAAAAGCATAATAGAAATAAGAGAGTTCGTGGCACTAAGGTGGAAGAGGTTGCTGCTTTACTTGAAAGTGCAGTGTTGGTGGGAGAGTTATGGGCAGTAGTTCGAGATGAGAGAGGTGCTTGTATTGGAGTGCTTGTTATGCCAAGAGTGGGATCTATTAGTCCTCATACTTGTGAAGCTTTGGCATTAGTAAACGAGTTATATTTCTGTGTTCAAGCAGGGCTCTCGCATGTTGTTATTGAAGGGGATGCTTGCAATGTCATTGCTGCCCTGAATGGAACAGAAGAGGATTTGAGCATGGATGGAGCTTCTCTATCTGAAACCGCTGGCCGTCTCAAAGATCCTGCATCCATCCAGCGCAACGATGAAGGGTCGCTAGTTGTTGCAGTATCCCCTTTACATAAGACTGCAGATGGAACATCACTCCACACATTTAATCCAAGAGTTCATACCAACAAACGACAACTAGTTCCGGCAATCATCTTGAAACGTGCTGTTGCTGCTTCTATATATCAATCTAAGCCTGATGATGATAACTTCAAGGTTAGCGGTACTGTCCCAAATGGTAAACCTGAGCGCGTAATAGAATGGTACCAGAGGTACTCCAAAATGAGATGGGGAACTGGTTTTGGGCACTCATTGTTAATCAACGAAATGAGACAGAAAAACACGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

457

Amino Acids

51.59

Weight (kDa)

9.67

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 260 - 326 8.4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018047)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g25921
rosa_chinensis RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii Rroxscaffold_4G00330770
rosa_samantha Rh1CG023000 Rh3CG227600
rosa_wichuraiana Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 1281
AccB1I GGYRCC 1 cut(s) 1281
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 1269
AciI CCGC 2 cut(s) 1014, 1239
AclWI GGATC 5 cut(s) 37, 408, 499, 850, 1025
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 3 cut(s) 185, 292, 358
AfaI GTAC 4 cut(s) 638, 1243, 1283, 1292
AfiI CCNNNNNNNGG 1 cut(s) 839
AgsI TTSAA 8 cut(s) 65, 514, 550, 755, 905, 932, 1177, 1231
AhlI ACTAGT 1 cut(s) 1156
AjnI CCWGG 2 cut(s) 13, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 4 cut(s) 221, 460, 869, 998
AluI AGCT 4 cut(s) 221, 460, 869, 998
Alw26I GTCTC 2 cut(s) 1028, 1342
AlwI GGATC 5 cut(s) 37, 408, 499, 850, 1025
AlwNI CAGNNNCTG 1 cut(s) 670
AoxI GGCC 2 cut(s) 10, 1018
ApeKI GCWGC 3 cut(s) 743, 956, 1190
ApoI RAATTY 3 cut(s) 185, 292, 358
Asp700I GAANNNNTTC 2 cut(s) 69, 594
Asp718I GGTACC 1 cut(s) 1281
AspLEI GCGC 2 cut(s) 1050, 1269
AspS9I GGNCC 2 cut(s) 11, 647
AsuC2I CCSGG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 647
BaeGI GKGCMC 1 cut(s) 1326
BanI GGYRCC 1 cut(s) 1281
BanII GRGCYC 1 cut(s) 915
BauI CACGAG 1 cut(s) 1360
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 3 cut(s) 730, 943, 1177
BccI CCATC 6 cut(s) 474, 488, 986, 1049, 1097, 1299
BceAI ACGGC 1 cut(s) 1005
BcgI CGANNNNNNTGC 2 cut(s) 897, 931
BciT130I CCWGG 2 cut(s) 15, 665
BciVI GTATCC 1 cut(s) 1090
BcnI CCSGG 1 cut(s) 398
BcoDI GTCTC 2 cut(s) 1028, 1342
BcuI ACTAGT 1 cut(s) 1156
BfaI CTAG 5 cut(s) 404, 611, 630, 1067, 1157
BfmI CTRYAG 1 cut(s) 1098
BfuAI ACCTGC 1 cut(s) 191
BfuI GTATCC 1 cut(s) 1090
BisI GCNGC 3 cut(s) 744, 957, 1191
BlsI GCNGC 3 cut(s) 745, 958, 1192
Bme1390I CCNGG 3 cut(s) 15, 398, 665
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 2 cut(s) 11, 647
BmiI GGNNCC 2 cut(s) 649, 1283
BmrFI CCNGG 3 cut(s) 15, 398, 665
BmsI GCATC 2 cut(s) 928, 1046
BpmI CTGGAG 1 cut(s) 647
Bpu10I CCTNAGC 3 cut(s) 222, 534, 1263
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 13, 14
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse1I ACTGG 3 cut(s) 151, 347, 1318
Bse3DI GCAATG 2 cut(s) 951, 952
BseBI CCWGG 2 cut(s) 15, 665
BseDI CCNNGG 2 cut(s) 13, 14
BseGI GGATG 5 cut(s) 499, 943, 997, 1037, 1041
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 2 cut(s) 951, 952
BseMII CTCAG 4 cut(s) 236, 515, 548, 1254
BseNI ACTGG 3 cut(s) 151, 347, 1318
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 1326
BseXI GCAGC 3 cut(s) 730, 943, 1177
BseYI CCCAGC 1 cut(s) 388
BsgI GTGCAG 2 cut(s) 342, 780
Bsh1236I CGCG 1 cut(s) 1269
BshFI GGCC 2 cut(s) 12, 1020
BshNI GGYRCC 1 cut(s) 1281
BsiSI CCGG 3 cut(s) 397, 508, 1163
BslFI GGGAC 2 cut(s) 633, 1232
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 2 cut(s) 1028, 1342
BsmBI CGTCTC 1 cut(s) 1028
BsmFI GGGAC 2 cut(s) 633, 1232
BsnI GGCC 2 cut(s) 12, 1020
Bsp1286I GDGCHC 2 cut(s) 915, 1326
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 5 cut(s) 42, 400, 504, 842, 1030
BspACI CCGC 2 cut(s) 1014, 1239
BspANI GGCC 2 cut(s) 12, 1020
BspCNI CTCAG 4 cut(s) 235, 514, 547, 1255
BspFNI CGCG 1 cut(s) 1269
BspLI GGNNCC 2 cut(s) 649, 1283
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 5 cut(s) 37, 408, 499, 850, 1025
BspT107I GGYRCC 1 cut(s) 1281
BsrDI GCAATG 2 cut(s) 951, 952
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 3 cut(s) 151, 347, 1318
BssECI CCNNGG 2 cut(s) 13, 14
BssMI GATC 5 cut(s) 42, 400, 504, 842, 1030
BssNAI GTATAC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 1360
Bst1107I GTATAC 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 1360
Bst2UI CCWGG 2 cut(s) 15, 665
Bst4CI ACNGT 3 cut(s) 51, 641, 1246
Bst6I CTCTTC 2 cut(s) 729, 969
BstAUI TGTACA 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 325, 943, 1018
BstDEI CTNAG 6 cut(s) 222, 501, 534, 726, 1209, 1263
BstEII GGTNACC 1 cut(s) 96
BstF5I GGATG 5 cut(s) 499, 943, 997, 1037, 1041
BstFNI CGCG 1 cut(s) 1269
BstHHI GCGC 2 cut(s) 1050, 1269
BstKTI GATC 5 cut(s) 45, 403, 507, 845, 1033
BstMAI GTCTC 2 cut(s) 1028, 1342
BstMBI GATC 5 cut(s) 42, 400, 504, 842, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 829, 1190
BstNI CCWGG 2 cut(s) 15, 665
BstNSI RCATGY 1 cut(s) 923
BstPI GGTNACC 1 cut(s) 96
BstSCI CCNGG 3 cut(s) 13, 396, 663
BstSFI CTRYAG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 1326
BstUI CGCG 1 cut(s) 1269
BstV1I GCAGC 3 cut(s) 730, 943, 1177
BstX2I RGATCY 5 cut(s) 42, 400, 504, 842, 1030
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 5 cut(s) 42, 400, 504, 842, 1030
BstZ17I GTATAC 1 cut(s) 240
BsuI GTATCC 1 cut(s) 1090
BsuRI GGCC 2 cut(s) 12, 1020
BtsCI GGATG 5 cut(s) 499, 943, 997, 1037, 1041
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 2 cut(s) 340, 768
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 3 cut(s) 325, 943, 1018
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 2 cut(s) 1050, 1269
Cfr13I GGNCC 2 cut(s) 11, 647
Csp6I GTAC 4 cut(s) 637, 1242, 1282, 1291
CviAII CATG 3 cut(s) 208, 920, 988
CviQI GTAC 4 cut(s) 637, 1242, 1282, 1291
DdeI CTNAG 6 cut(s) 222, 501, 534, 726, 1209, 1263
DpnI GATC 5 cut(s) 44, 402, 506, 844, 1032
DpnII GATC 5 cut(s) 42, 400, 504, 842, 1030
DraI TTTAAA 1 cut(s) 621
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 2 cut(s) 729, 969
EarI CTCTTC 2 cut(s) 729, 969
Eco24I GRGCYC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 647
Eco91I GGTNACC 1 cut(s) 96
EcoO65I GGTNACC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 13, 663
EcoT38I GRGCYC 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 1028
FaeI CATG 3 cut(s) 211, 923, 991
FaqI GGGAC 2 cut(s) 633, 1232
FatI CATG 3 cut(s) 207, 919, 987
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 3 cut(s) 744, 957, 1191
FokI GGATG 5 cut(s) 506, 950, 1004, 1024, 1028
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 3 cut(s) 744, 957, 1191
FspBI CTAG 5 cut(s) 404, 611, 630, 1067, 1157
GlaI GCGC 2 cut(s) 1049, 1268
GluI GCNGC 3 cut(s) 744, 957, 1191
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 2 cut(s) 12, 1020
HapII CCGG 3 cut(s) 397, 508, 1163
HhaI GCGC 2 cut(s) 1050, 1269
Hin1II CATG 3 cut(s) 211, 923, 991
Hin6I GCGC 2 cut(s) 1048, 1267
HinP1I GCGC 2 cut(s) 1048, 1267
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 4 cut(s) 303, 393, 529, 607
HpaII CCGG 3 cut(s) 397, 508, 1163
Hpy166II GTNNAC 4 cut(s) 240, 412, 883, 1259
Hpy188I TCNGA 3 cut(s) 257, 504, 1009
Hpy188III TCNNGA 5 cut(s) 404, 587, 599, 794, 1174
Hpy8I GTNNAC 4 cut(s) 240, 412, 883, 1259
HpyAV CCTTC 4 cut(s) 310, 374, 926, 1052
HpyCH4III ACNGT 3 cut(s) 51, 641, 1246
HpyCH4IV ACGT 2 cut(s) 236, 1180
HpyCH4V TGCA 6 cut(s) 323, 761, 945, 1037, 1076, 1100
HpyF10VI GCNNNNNNNGC 2 cut(s) 829, 1190
HpyF3I CTNAG 6 cut(s) 222, 501, 534, 726, 1209, 1263
HpySE526I ACGT 2 cut(s) 236, 1180
Hsp92II CATG 3 cut(s) 211, 923, 991
HspAI GCGC 2 cut(s) 1048, 1267
KpnI GGTACC 1 cut(s) 1285
Kzo9I GATC 5 cut(s) 42, 400, 504, 842, 1030
LmnI GCTCC 3 cut(s) 457, 666, 995
Lsp1109I GCAGC 3 cut(s) 730, 943, 1177
LweI GCATC 2 cut(s) 928, 1046
MaeI CTAG 5 cut(s) 404, 611, 630, 1067, 1157
MaeII ACGT 2 cut(s) 236, 1180
MaeIII GTNAC 3 cut(s) 96, 203, 604
MalI GATC 5 cut(s) 44, 402, 506, 844, 1032
MboI GATC 5 cut(s) 42, 400, 504, 842, 1030
MboII GAAGA 4 cut(s) 526, 582, 746, 986
MflI RGATCY 5 cut(s) 42, 400, 504, 842, 1030
MhlI GDGCHC 2 cut(s) 915, 1326
MluCI AATT 5 cut(s) 185, 292, 358, 429, 467
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 3 cut(s) 70, 135, 257
MroXI GAANNNNTTC 2 cut(s) 69, 594
MseI TTAA 5 cut(s) 428, 554, 620, 1125, 1334
MslI CAYNNNNRTG 2 cut(s) 728, 861
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 3 cut(s) 397, 508, 1163
MspR9I CCNGG 3 cut(s) 15, 398, 665
MvaI CCWGG 2 cut(s) 15, 665
MvnI CGCG 1 cut(s) 1269
MwoI GCNNNNNNNGC 2 cut(s) 829, 1190
NciI CCSGG 1 cut(s) 398
NdeII GATC 5 cut(s) 42, 400, 504, 842, 1030
NlaIII CATG 3 cut(s) 211, 923, 991
NlaIV GGNNCC 2 cut(s) 649, 1283
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 728
PasI CCCWGGG 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 69, 594
PfeI GAWTC 3 cut(s) 303, 393, 529
PfoI TCCNGGA 1 cut(s) 396
PkrI GCNGC 3 cut(s) 745, 958, 1192
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 13, 663
PspEI GGTNACC 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 2 cut(s) 13, 663
PspN4I GGNNCC 2 cut(s) 649, 1283
PspPI GGNCC 2 cut(s) 11, 647
PstI CTGCAG 1 cut(s) 1102
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 5 cut(s) 42, 400, 504, 842, 1030
RsaI GTAC 4 cut(s) 638, 1243, 1283, 1292
RsaNI GTAC 4 cut(s) 637, 1242, 1282, 1291
RseI CAYNNNNRTG 2 cut(s) 728, 861
SaqAI TTAA 5 cut(s) 428, 554, 620, 1125, 1334
SatI GCNGC 3 cut(s) 744, 957, 1191
Sau3AI GATC 5 cut(s) 42, 400, 504, 842, 1030
Sau96I GGNCC 2 cut(s) 11, 647
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 15, 398, 665
SduI GDGCHC 2 cut(s) 915, 1326
SfaNI GCATC 2 cut(s) 928, 1046
SfcI CTRYAG 1 cut(s) 1098
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 2 cut(s) 728, 861
SpeI ACTAGT 1 cut(s) 1156
Sse9I AATT 5 cut(s) 185, 292, 358, 429, 467
SsiI CCGC 2 cut(s) 1014, 1239
SspMI CTAG 5 cut(s) 404, 611, 630, 1067, 1157
StyD4I CCNGG 3 cut(s) 13, 396, 663
TaaI ACNGT 3 cut(s) 51, 641, 1246
TaiI ACGT 2 cut(s) 239, 1183
TaqI TCGA 1 cut(s) 793
TasI AATT 5 cut(s) 185, 292, 358, 429, 467
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 3 cut(s) 303, 393, 529
Tru1I TTAA 5 cut(s) 428, 554, 620, 1125, 1334
Tru9I TTAA 5 cut(s) 428, 554, 620, 1125, 1334
TscAI CASTG 2 cut(s) 347, 768
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 3 cut(s) 743, 956, 1190
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 4 cut(s) 263, 593, 1071, 1127
TspRI CASTG 2 cut(s) 347, 768
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 3 cut(s) 185, 292, 358
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 69, 594
XspI CTAG 5 cut(s) 404, 611, 630, 1067, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.