Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Reverse (-)

64472268 .. 64473428

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATGGAGATGAGATGACTCGAATTTTCTGGAAATCAATTAAGGATAAGCTTATCTTCCCCTTTTTGGATTGGGACATTAAATACTTTGACCTTGGTCTTACTCACCGTGATGCCACGATGATAAAGTTACCGTTGAAAGTGCAGAGGCTACTCTTAATTATCAAAGGACCTGGGAAATTGAAATTGTTGTTTGTTCCAGAAGGAAAGGACGAGATGCCCGAACTCGAATTACACAACTTTACAGGGGAAGGGGGAGTAGCAATTGCCATGTACAACACCGATGGATCAATCTGTGCTTTTGTAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGGTGGCCTCTTATAATAGCACAAAAAACACTATTCTTAATAAGTATGATGGAAGGTTCAAGGACATATTTCAAGAAGTTTATGAAGCCCATTGGAAATCGAAGTATGAAGCTGCTGGCATATGGTATGAACATCACCTCATTGATGATATGGTGGCTTACGCATTCAAAAGTGAAGGTGGTTATGTTTGGGCATCCAAGAATTATGATGGCGATGTGCAAAGTGATTTCTTAGCTCAAGTTACTCGGCATTATAGAGTTCACCAGAAAAGTGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGAGCTTGAGCACAAGGCAAAGTTGGATGACAATTTCACTCAGAAGCTGGAAGAAGCTTGTATTGAAACTGTGGAATCTGGGAAAATGACCAGGGATCTTGCACTAGTTCTTAACGGACCTAACCTTGCTAGGAACCACTACTTGAACACAAAAGAGTTCATTGAAGCCGTGGCAGTAGAACTGAAAGCAAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

285

Amino Acids

32.66

Weight (kDa)

5.89

Isoelectric Point (pI)

20.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	80 - 194	2.4e-19	Isocitrate/isopropylmalate dehydrogenase
Iso_dh	PF00180	203 - 276	4.2e-10	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AclWI	GGATC	2 cut(s)	295, 759
AcsI	RAATTY	1 cut(s)	24
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	8 cut(s)	139, 184, 397, 410, 505, 722, 802, 821
AhlI	ACTAGT	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	172, 746
Alw21I	GWGCWC	1 cut(s)	669
AlwI	GGATC	2 cut(s)	295, 759
AlwNI	CAGNNNCTG	1 cut(s)	703
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	170, 773
AsuHPI	GGTGA	4 cut(s)	98, 464, 590, 623
AvaII	GGWCC	2 cut(s)	170, 773
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	278, 380, 539
BceAI	ACGGC	1 cut(s)	809
BciT130I	CCWGG	2 cut(s)	174, 748
BcuI	ACTAGT	1 cut(s)	760
BfaI	CTAG	2 cut(s)	761, 786
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	174, 748
Bme18I	GGWCC	2 cut(s)	170, 773
BmgT120I	GGNCC	2 cut(s)	170, 773
BmiI	GGNNCC	1 cut(s)	791
BmrFI	CCNGG	2 cut(s)	174, 748
BmsI	GCATC	3 cut(s)	103, 207, 539
BoxI	GACNNNNGTC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	558, 683
BsaJI	CCNNGG	4 cut(s)	94, 173, 747, 825
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	174, 748
BseDI	CCNNGG	4 cut(s)	94, 173, 747, 825
BseGI	GGATG	3 cut(s)	10, 530, 688
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	710
BseXI	GCAGC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	287, 751
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	791
BspPI	GGATC	2 cut(s)	295, 759
BsrGI	TGTACA	1 cut(s)	273
BssECI	CCNNGG	4 cut(s)	94, 173, 747, 825
BssMI	GATC	2 cut(s)	287, 751
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	174, 748
Bst4CI	ACNGT	3 cut(s)	110, 135, 727
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	568, 696
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	10, 530, 688
BstKTI	GATC	2 cut(s)	290, 754
BstMBI	GATC	2 cut(s)	287, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	627
BstNI	CCWGG	2 cut(s)	174, 748
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	172, 746
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	10, 530, 688
Cac8I	GCNNGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	170, 773
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	568, 696
DpnI	GATC	2 cut(s)	289, 753
DpnII	GATC	2 cut(s)	287, 751
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	170, 773
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	172, 746
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	274
FalI	AAGNNNNNCTT	3 cut(s)	41, 73, 834
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	3 cut(s)	17, 517, 695
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	2 cut(s)	761, 786
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	274
HindIII	AAGCTT	4 cut(s)	50, 309, 711, 848
HinfI	GANTC	2 cut(s)	19, 731
HphI	GGTGA	4 cut(s)	98, 464, 590, 623
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	1 cut(s)	699
Hpy188III	TCNNGA	4 cut(s)	31, 200, 410, 855
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	4 cut(s)	197, 245, 384, 506
HpyCH4III	ACNGT	3 cut(s)	110, 135, 727
HpyCH4V	TGCA	3 cut(s)	145, 556, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	627
HpyF3I	CTNAG	2 cut(s)	568, 696
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	287, 751
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	103, 207, 539
MaeI	CTAG	2 cut(s)	761, 786
MaeIII	GTNAC	2 cut(s)	129, 577
MalI	GATC	2 cut(s)	289, 753
MboI	GATC	2 cut(s)	287, 751
MboII	GAAGA	2 cut(s)	49, 719
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	9 cut(s)	24, 39, 159, 179, 185, 230, 264, 538, 688
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	3 cut(s)	141, 355, 485
MseI	TTAA	5 cut(s)	42, 81, 158, 375, 768
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	174, 748
MunI	CAATTG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	2 cut(s)	174, 748
MwoI	GCNNNNNNNGC	1 cut(s)	627
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	2 cut(s)	287, 751
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	791
NmeAIII	GCCGAG	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	170
PshAI	GACNNNNGTC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	172, 746
PspGI	CCWGG	2 cut(s)	172, 746
PspN4I	GGNNCC	1 cut(s)	791
PspPI	GGNCC	2 cut(s)	170, 773
PspPPI	RGGWCCY	1 cut(s)	170
PsrI	GAACNNNNNNTAC	2 cut(s)	216, 248
PstNI	CAGNNNCTG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	751
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	5 cut(s)	42, 81, 158, 375, 768
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	287, 751
Sau96I	GGNCC	2 cut(s)	170, 773
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	174, 748
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	3 cut(s)	103, 207, 539
SinI	GGWCC	2 cut(s)	170, 773
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	573, 662
SmoI	CTYRAG	2 cut(s)	573, 662
SpeI	ACTAGT	1 cut(s)	760
Sse9I	AATT	9 cut(s)	24, 39, 159, 179, 185, 230, 264, 538, 688
SspMI	CTAG	2 cut(s)	761, 786
StyD4I	CCNGG	2 cut(s)	172, 746
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	3 cut(s)	110, 135, 727
TaqI	TCGA	3 cut(s)	22, 228, 437
TasI	AATT	9 cut(s)	24, 39, 159, 179, 185, 230, 264, 538, 688
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	5 cut(s)	42, 81, 158, 375, 768
Tru9I	TTAA	5 cut(s)	42, 81, 158, 375, 768
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	5 cut(s)	332, 435, 459, 480, 805
TspGWI	ACGGA	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	170, 773
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	2 cut(s)	761, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.