Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Forward (+)

2952490 .. 2953691

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCATTTGAGAAGATCAAGATCATGACTCGAATTTTCTGGAAATCAATTAAGGATAAGCTTATTTTCCCCTTTTTGGATTGGGACATTAAGTACTTTGACCTTGGTCTTACCCACCGTGATGCCACGATGATAAAGTTACCGTTGAAAGTCTCACATGAGGAGTTAAGCTTTAAGCAAATGTGGAGGCGTTCCAATGGGACTATTAGGAATATTTTGAATGAACATTCCTTGCCTCATTGGACGAAGCCAATATGCATTGGAAAACATGCTTTCGGTGATCAATATCGAGCAACTGATACAGTTATCAAAGTACCTGGGAAATTGAAATTGTTGTTTGTTCCAGAAGGAAAGGACGAGATGACCGAACTGGAATTACACAACTTTACAGGGGAAGGGGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCTGTGCTTTTGTAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGGTGGCCTCTTATAACAGCACAAAAAACACTATTCTTAATAAGTATGATGGAAGGTTCAAGGACATATTTCAAGAAGTTTATGATGCCCATTGGAAATCGAAGTATGAAGCTGCTGGCATATGGTATGAACATCACCTCATTGATGATATGGTGGCTTACACATTCAAAAGTGAAGGTGGTTATGTTTGGGCATCCAAGAATTATGATGGCGATGTGCAAAGTGATTTCTTAGCTCAAGAAGCTGAACCTGTCCATGGTACAGTTACTCGGCATTATAGAGTTCACCAGAAAAGTGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGAGCTTGAGCACAAGGCAAAGTTGGATGACAATTTCACTCAGAAGCTGGAAGAAGCTTGTATTGAAACTGTGGAATCTGGGAAAATGACCAAGGATCTTGCACTAGTTCTTAATGGACCTAACCTTGCTAGGAACCACTACTTGAACACAGAAGAGTTCATTGATGCCGTGGCAGCAGAACTGAACGCAAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

341

Amino Acids

39.2

Weight (kDa)

6.07

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	81 - 240	3e-23	Isocitrate/isopropylmalate dehydrogenase
Iso_dh	PF00180	241 - 332	2.6e-14	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	495
AclWI	GGATC	1 cut(s)	927
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	4 cut(s)	95, 315, 419, 742
AfiI	CCNNNNNNNGG	2 cut(s)	76, 737
AgsI	TTSAA	8 cut(s)	148, 220, 328, 541, 554, 649, 890, 970
AhlI	ACTAGT	1 cut(s)	928
AjnI	CCWGG	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	927
AlwNI	CAGNNNCTG	1 cut(s)	871
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	593, 998
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	941
AsuHPI	GGTGA	4 cut(s)	290, 608, 758, 791
AvaII	GGWCC	1 cut(s)	941
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	2 cut(s)	580, 1010
BccI	CCATC	2 cut(s)	524, 683
BceAI	ACGGC	1 cut(s)	977
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	157
BcuI	ACTAGT	1 cut(s)	928
BfaI	CTAG	2 cut(s)	929, 954
BisI	GCNGC	2 cut(s)	594, 999
BlsI	GCNGC	2 cut(s)	595, 1000
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	941
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	112, 556, 683, 979
BoxI	GACNNNNGTC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	702, 851
BsaBI	GATNNNNATC	2 cut(s)	20, 285
BsaJI	CCNNGG	5 cut(s)	103, 317, 736, 915, 993
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 737
Bse1I	ACTGG	1 cut(s)	375
Bse8I	GATNNNNATC	2 cut(s)	20, 285
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	5 cut(s)	103, 317, 736, 915, 993
BseGI	GGATG	2 cut(s)	674, 856
BseJI	GATNNNNATC	2 cut(s)	20, 285
BseLI	CCNNNNNNNGG	2 cut(s)	76, 737
BseMII	CTCAG	1 cut(s)	878
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	580, 1010
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	837
BslFI	GGGAC	2 cut(s)	98, 214
BslI	CCNNNNNNNGG	2 cut(s)	76, 737
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	98, 214
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	15, 21, 280, 919
Bsp19I	CCATGG	1 cut(s)	736
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	877
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	959
BspPI	GGATC	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	5 cut(s)	103, 317, 736, 915, 993
BssMI	GATC	4 cut(s)	15, 21, 280, 919
BssT1I	CCWWGG	3 cut(s)	103, 736, 915
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	5 cut(s)	119, 144, 304, 745, 895
Bst6I	CTCTTC	1 cut(s)	972
BstAUI	TGTACA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	712, 864
BstDSI	CCRYGG	2 cut(s)	736, 993
BstF5I	GGATG	2 cut(s)	674, 856
BstKTI	GATC	4 cut(s)	18, 24, 283, 922
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	4 cut(s)	15, 21, 280, 919
BstMWI	GCNNNNNNNGC	3 cut(s)	722, 795, 998
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	272
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	580, 1010
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	2 cut(s)	736, 993
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	674, 856
Cac8I	GCNNGC	1 cut(s)	598
CaiI	CAGNNNCTG	1 cut(s)	871
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	941
Csp6I	GTAC	4 cut(s)	94, 314, 418, 741
CviAII	CATG	5 cut(s)	25, 158, 269, 415, 737
CviQI	GTAC	4 cut(s)	94, 314, 418, 741
DdeI	CTNAG	2 cut(s)	712, 864
DpnI	GATC	4 cut(s)	17, 23, 282, 921
DpnII	GATC	4 cut(s)	15, 21, 280, 919
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
Eco130I	CCWWGG	3 cut(s)	103, 736, 915
Eco47I	GGWCC	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	103, 736, 915
EcoT22I	ATGCAT	1 cut(s)	260
ErhI	CCWWGG	3 cut(s)	103, 736, 915
FaeI	CATG	5 cut(s)	28, 161, 272, 418, 740
FaqI	GGGAC	2 cut(s)	98, 214
FatI	CATG	5 cut(s)	24, 157, 268, 414, 736
FauNDI	CATATG	1 cut(s)	602
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	594, 999
FokI	GGATG	2 cut(s)	661, 863
Fsp4HI	GCNGC	2 cut(s)	594, 999
FspBI	CTAG	2 cut(s)	929, 954
GluI	GCNGC	2 cut(s)	594, 999
HaeIII	GGCC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	28, 161, 272, 418, 740
HindIII	AAGCTT	5 cut(s)	59, 169, 453, 879, 1016
HinfI	GANTC	3 cut(s)	28, 431, 899
HphI	GGTGA	4 cut(s)	290, 608, 758, 791
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	1 cut(s)	867
Hpy188III	TCNNGA	7 cut(s)	19, 25, 40, 344, 554, 719, 1023
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	4 cut(s)	341, 389, 528, 650
HpyCH4III	ACNGT	5 cut(s)	119, 144, 304, 745, 895
HpyCH4V	TGCA	3 cut(s)	258, 700, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	722, 795, 998
HpyF3I	CTNAG	2 cut(s)	712, 864
Hsp92II	CATG	5 cut(s)	28, 161, 272, 418, 740
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	15, 21, 280, 919
Lsp1109I	GCAGC	2 cut(s)	580, 1010
LweI	GCATC	4 cut(s)	112, 556, 683, 979
MaeI	CTAG	2 cut(s)	929, 954
MaeIII	GTNAC	2 cut(s)	138, 745
MalI	GATC	4 cut(s)	17, 23, 282, 921
MboI	GATC	4 cut(s)	15, 21, 280, 919
MboII	GAAGA	3 cut(s)	25, 887, 989
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	8 cut(s)	33, 48, 323, 329, 374, 408, 682, 856
MlyI	GAGTC	2 cut(s)	22, 440
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	5 cut(s)	154, 180, 246, 499, 629
Mph1103I	ATGCAT	1 cut(s)	260
MseI	TTAA	6 cut(s)	51, 90, 167, 174, 519, 936
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	722, 795, 998
NcoI	CCATGG	1 cut(s)	736
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	4 cut(s)	15, 21, 280, 919
NlaIII	CATG	5 cut(s)	28, 161, 272, 418, 740
NlaIV	GGNNCC	1 cut(s)	959
NmeAIII	GCCGAG	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	260
NspI	RCATGY	1 cut(s)	272
PagI	TCATGA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	899
PkrI	GCNGC	2 cut(s)	595, 1000
PleI	GAGTC	2 cut(s)	22, 439
PpsI	GAGTC	2 cut(s)	22, 439
PshAI	GACNNNNGTC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	1 cut(s)	941
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
PstNI	CAGNNNCTG	1 cut(s)	871
PsuI	RGATCY	1 cut(s)	919
RsaI	GTAC	4 cut(s)	95, 315, 419, 742
RsaNI	GTAC	4 cut(s)	94, 314, 418, 741
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	51, 90, 167, 174, 519, 936
SatI	GCNGC	2 cut(s)	594, 999
Sau3AI	GATC	4 cut(s)	15, 21, 280, 919
Sau96I	GGNCC	1 cut(s)	941
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	22, 440
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	4 cut(s)	112, 556, 683, 979
SinI	GGWCC	1 cut(s)	941
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	717, 830
SmoI	CTYRAG	2 cut(s)	717, 830
SpeI	ACTAGT	1 cut(s)	928
Sse9I	AATT	8 cut(s)	33, 48, 323, 329, 374, 408, 682, 856
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	2 cut(s)	929, 954
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	3 cut(s)	103, 736, 915
TaaI	ACNGT	5 cut(s)	119, 144, 304, 745, 895
TaqI	TCGA	3 cut(s)	31, 289, 581
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	8 cut(s)	33, 48, 323, 329, 374, 408, 682, 856
TatI	WGTACW	2 cut(s)	93, 417
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	6 cut(s)	51, 90, 167, 174, 519, 936
Tru9I	TTAA	6 cut(s)	51, 90, 167, 174, 519, 936
TseI	GCWGC	2 cut(s)	593, 998
TspDTI	ATGAA	5 cut(s)	237, 476, 603, 624, 973
VpaK11BI	GGWCC	1 cut(s)	941
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	272
XspI	CTAG	2 cut(s)	929, 954
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.