Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Reverse (-)

21405895 .. 21407864

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTATTTGTCCCAGAAGGAGACACCCCTACGGAGCGTAATGTCCATGATTTCAAAGGTCCTGGTGTGGCCCTCGCTATGTATAATGTTGATGAGTCTATTCGAGCTTTTGCTGACTCTTCCATGTCGATGGCATTTTCCAAGAAGTGGCCACTATACTTGAGCACCAAAAACACAATTCTTAAGAAATATGATGGCAGGTTTAAGGACGTATTCGAGGAGGTTTATGTGGAAAAGTGGAAGCAGAAGTTTGAAGAAAACTCTATATGGTGTGAGCATCGGCTAATAGATGACATGAGTGATTTGCTTGCTCAAGGATTTGGCTCTTTGGGCCTCATGACTTCTGTGCTGCTATCCTCAGATGGGAAAACAATAGAAGCTGAAGCAGCTCATGGGACAGTAACTCGTCATTTTCAGGTTGCATCAGAAGGGACAAGAAACCAGTACAAACAGTATTGCTTCAATATTTGCATGGACAAGAGGCCTAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

164

Amino Acids

18.75

Weight (kDa)

6.09

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	21 - 99	3.1e-10	Isocitrate/isopropylmalate dehydrogenase
Iso_dh	PF00180	99 - 139	1.3e-07	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	147, 363
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	55, 254, 463
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	3 cut(s)	107, 380, 389
AluI	AGCT	3 cut(s)	107, 380, 389
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	4 cut(s)	69, 149, 331, 482
ApeKI	GCWGC	2 cut(s)	349, 386
AspS9I	GGNCC	3 cut(s)	59, 70, 331
AvaII	GGWCC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	336, 398
BccI	CCATC	3 cut(s)	124, 188, 356
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	189
BisI	GCNGC	2 cut(s)	350, 387
BlsI	GCNGC	2 cut(s)	351, 388
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	3 cut(s)	59, 70, 331
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	286, 431
BpuEI	CTTGAG	2 cut(s)	181, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 363
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	147, 363
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	336, 398
BshFI	GGCC	4 cut(s)	71, 151, 333, 484
BsiHKAI	GWGCWC	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	409, 445
BslI	CCNNNNNNNGG	2 cut(s)	147, 363
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	409, 445
BsnI	GGCC	4 cut(s)	71, 151, 333, 484
Bsp1286I	GDGCHC	1 cut(s)	167
BspANI	GGCC	4 cut(s)	71, 151, 333, 484
BspCNI	CTCAG	1 cut(s)	371
BspHI	TCATGA	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	400, 453
Bst6I	CTCTTC	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 386
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	336, 398
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	71, 151, 333, 484
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	59, 70, 331
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	6 cut(s)	47, 124, 295, 337, 392, 472
CviJI	RGCY	9 cut(s)	71, 107, 151, 283, 324, 333, 380, 389, 484
CviKI_1	RGCY	9 cut(s)	71, 107, 151, 283, 324, 333, 380, 389, 484
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	402
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	6 cut(s)	50, 127, 298, 340, 395, 475
FaqI	GGGAC	2 cut(s)	409, 445
FatI	CATG	6 cut(s)	46, 123, 294, 336, 391, 471
Fnu4HI	GCNGC	2 cut(s)	350, 387
Fsp4HI	GCNGC	2 cut(s)	350, 387
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	350, 387
HaeIII	GGCC	4 cut(s)	71, 151, 333, 484
Hin1II	CATG	6 cut(s)	50, 127, 298, 340, 395, 475
HinfI	GANTC	2 cut(s)	95, 116
Hpy188I	TCNGA	2 cut(s)	361, 427
Hpy188III	TCNNGA	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	11, 422
HpyCH4III	ACNGT	2 cut(s)	400, 453
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	422, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 386
HpyF3I	CTNAG	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	6 cut(s)	50, 127, 298, 340, 395, 475
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	27, 48, 75, 184, 401, 455
Lsp1109I	GCAGC	2 cut(s)	336, 398
LweI	GCATC	2 cut(s)	286, 431
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	111, 266
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	104, 110
MnlI	CCTC	6 cut(s)	83, 211, 214, 344, 367, 474
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	2 cut(s)	183, 204
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	330, 386
NlaIII	CATG	6 cut(s)	50, 127, 298, 340, 395, 475
PagI	TCATGA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	351, 388
PleI	GAGTC	2 cut(s)	103, 110
PpsI	GAGTC	2 cut(s)	103, 110
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	3 cut(s)	59, 70, 331
PspPPI	RGGWCCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	183, 204
SatI	GCNGC	2 cut(s)	350, 387
Sau96I	GGNCC	3 cut(s)	59, 70, 331
SchI	GAGTC	2 cut(s)	104, 110
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	61, 109, 203, 213, 225, 382, 391, 420
SfaNI	GCATC	2 cut(s)	286, 431
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	3 cut(s)	160, 182, 312
SmoI	CTYRAG	3 cut(s)	160, 182, 312
Sse9I	AATT	1 cut(s)	177
SseBI	AGGCCT	1 cut(s)	484
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	400, 453
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	103, 128, 216
TasI	AATT	1 cut(s)	177
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	2 cut(s)	183, 204
Tru9I	TTAA	2 cut(s)	183, 204
TseI	GCWGC	2 cut(s)	349, 386
TspGWI	ACGGA	1 cut(s)	47
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	59
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.