Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Forward (+)

2957213 .. 2958401

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATTTGAGAAGATCAAGATCATGACTCGAATTTTCTGGAAATCAATTAAGGATAAGCTTATTTTCCCCTTTTTGGATTGGGACATTAAGTACTTTGACCTTGGTCTTACTCACCGTGATGCCATGATGATAAAGTTACCCTCACATGAGGAGTTAAGCTTTAAGCAAATGTGGAGGCGTTCCAATGGGACTATTAGGAATATTTTGAATGAACATTCCTTGCCTCATTGGACGAAGCCAACATGCATTGGAAAACATGCTTTCGGTGATCAATATCGAGCAACTGATACAGTTATCAAAGGACCTGGAAAATTGAAATTGTTGTTTGTTCCAGAAGGAAAGGACGAGATGACCGAACTGGAATTACACAACTTTACAGGGGAAGGGGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCTGTGCTTTTGTAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGGTGGCCTCTTATAATAGCACAAAAAACACTATTCTTAATAAGTATGATGGAAGGTTCAAGGACATATTTCAAGAAGTTTATGATGCCCATTGGAAATCAAAGTATGAAGCTGCTGGCATATGGTATGAACATCACCTCATTGATGATATGGTGGCTTACACATTCAAAAGTGAAGGTGGTTATGTTTGGGCATCCAAGAATTATGATGGCGATGTGCAAAGTGATTTCTTAGCTCAAGAAGCTGAACCTGTCCATGGTACAGTTACTCGGCATTATAGAGTTCACCAGAAAAGTGGTGAAACCAGCACAAACAGCATAGCTTCTATTTTTGCTTGGACAAGAGAGCTTGAGCACAAGGCAAAAAGCTTGTATTCTGGGAAAATGACCAAGGATCTTGCACTAGTTCTTAACGGACCTAACCTTGCTAGGAACCACTACTTGAACACGGAAGAGTTCATTGATGCCGTGGCAGCAGAACTGAACGCAAAGCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

323

Amino Acids

37.12

Weight (kDa)

6.54

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	80 - 314	5.1e-27	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AclWI	GGATC	1 cut(s)	873
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	3 cut(s)	95, 410, 733
AfiI	CCNNNNNNNGG	2 cut(s)	76, 728
AgsI	TTSAA	6 cut(s)	211, 319, 532, 545, 640, 916
AhlI	ACTAGT	1 cut(s)	874
AjnI	CCWGG	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	828
AlwI	GGATC	1 cut(s)	873
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	584, 944
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	305, 887
AsuHPI	GGTGA	5 cut(s)	107, 281, 599, 749, 782
AvaII	GGWCC	2 cut(s)	305, 887
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	571, 956
BccI	CCATC	2 cut(s)	515, 674
BceAI	ACGGC	1 cut(s)	923
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	2 cut(s)	875, 900
BisI	GCNGC	2 cut(s)	585, 945
BlsI	GCNGC	2 cut(s)	586, 946
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	305, 887
BmgT120I	GGNCC	2 cut(s)	305, 887
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	4 cut(s)	112, 547, 674, 925
BoxI	GACNNNNGTC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	693, 842
BsaBI	GATNNNNATC	2 cut(s)	20, 276
BsaJI	CCNNGG	4 cut(s)	103, 727, 861, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 728
Bse1I	ACTGG	1 cut(s)	366
Bse8I	GATNNNNATC	2 cut(s)	20, 276
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	103, 727, 861, 939
BseGI	GGATG	1 cut(s)	665
BseJI	GATNNNNATC	2 cut(s)	20, 276
BseLI	CCNNNNNNNGG	2 cut(s)	76, 728
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	571, 956
BshFI	GGCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	828
BslFI	GGGAC	2 cut(s)	98, 205
BslI	CCNNNNNNNGG	2 cut(s)	76, 728
BsmFI	GGGAC	2 cut(s)	98, 205
BsnI	GGCC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	4 cut(s)	15, 21, 271, 865
Bsp19I	CCATGG	1 cut(s)	727
BspANI	GGCC	1 cut(s)	479
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	905
BspPI	GGATC	1 cut(s)	873
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	4 cut(s)	103, 727, 861, 939
BssMI	GATC	4 cut(s)	15, 21, 271, 865
BssT1I	CCWWGG	3 cut(s)	103, 727, 861
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	119, 295, 736
Bst6I	CTCTTC	1 cut(s)	918
BstAUI	TGTACA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	703
BstDSI	CCRYGG	2 cut(s)	727, 939
BstF5I	GGATG	1 cut(s)	665
BstKTI	GATC	4 cut(s)	18, 24, 274, 868
BstMBI	GATC	4 cut(s)	15, 21, 271, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	713, 786, 944
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	249, 263
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	571, 956
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	865
BsuRI	GGCC	1 cut(s)	479
BtgI	CCRYGG	2 cut(s)	727, 939
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	665
Cac8I	GCNNGC	1 cut(s)	589
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	305, 887
Csp6I	GTAC	3 cut(s)	94, 409, 732
CviAII	CATG	7 cut(s)	25, 127, 149, 246, 260, 406, 728
CviQI	GTAC	3 cut(s)	94, 409, 732
DdeI	CTNAG	1 cut(s)	703
DpnI	GATC	4 cut(s)	17, 23, 273, 867
DpnII	GATC	4 cut(s)	15, 21, 271, 865
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco130I	CCWWGG	3 cut(s)	103, 727, 861
Eco47I	GGWCC	2 cut(s)	305, 887
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	103, 727, 861
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	3 cut(s)	103, 727, 861
FaeI	CATG	7 cut(s)	28, 130, 152, 249, 263, 409, 731
FaqI	GGGAC	2 cut(s)	98, 205
FatI	CATG	7 cut(s)	24, 126, 148, 245, 259, 405, 727
FauNDI	CATATG	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	585, 945
FokI	GGATG	1 cut(s)	652
Fsp4HI	GCNGC	2 cut(s)	585, 945
FspBI	CTAG	2 cut(s)	875, 900
GluI	GCNGC	2 cut(s)	585, 945
HaeIII	GGCC	1 cut(s)	479
Hin1II	CATG	7 cut(s)	28, 130, 152, 249, 263, 409, 731
HindIII	AAGCTT	5 cut(s)	59, 160, 444, 838, 962
HinfI	GANTC	2 cut(s)	28, 422
HphI	GGTGA	5 cut(s)	107, 281, 599, 749, 782
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188III	TCNNGA	7 cut(s)	19, 25, 40, 335, 545, 710, 969
Hpy8I	GTNNAC	1 cut(s)	757
HpyAV	CCTTC	4 cut(s)	332, 380, 519, 641
HpyCH4III	ACNGT	3 cut(s)	119, 295, 736
HpyCH4V	TGCA	3 cut(s)	249, 691, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	713, 786, 944
HpyF3I	CTNAG	1 cut(s)	703
Hsp92II	CATG	7 cut(s)	28, 130, 152, 249, 263, 409, 731
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	15, 21, 271, 865
Lsp1109I	GCAGC	2 cut(s)	571, 956
LweI	GCATC	4 cut(s)	112, 547, 674, 925
MaeI	CTAG	2 cut(s)	875, 900
MaeIII	GTNAC	2 cut(s)	138, 736
MalI	GATC	4 cut(s)	17, 23, 273, 867
MboI	GATC	4 cut(s)	15, 21, 271, 865
MboII	GAAGA	2 cut(s)	25, 935
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	7 cut(s)	33, 48, 314, 320, 365, 399, 673
MlyI	GAGTC	2 cut(s)	22, 431
MnlI	CCTC	6 cut(s)	145, 154, 171, 237, 490, 620
Mph1103I	ATGCAT	1 cut(s)	251
MseI	TTAA	6 cut(s)	51, 90, 158, 165, 510, 882
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	713, 786, 944
NcoI	CCATGG	1 cut(s)	727
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	4 cut(s)	15, 21, 271, 865
NlaIII	CATG	7 cut(s)	28, 130, 152, 249, 263, 409, 731
NlaIV	GGNNCC	1 cut(s)	905
NmeAIII	GCCGAG	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	251
NspI	RCATGY	2 cut(s)	249, 263
PagI	TCATGA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	586, 946
PleI	GAGTC	2 cut(s)	22, 430
PpsI	GAGTC	2 cut(s)	22, 430
PpuMI	RGGWCCY	1 cut(s)	305
PshAI	GACNNNNGTC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	905
PspPI	GGNCC	2 cut(s)	305, 887
PspPPI	RGGWCCY	1 cut(s)	305
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PsuI	RGATCY	1 cut(s)	865
RsaI	GTAC	3 cut(s)	95, 410, 733
RsaNI	GTAC	3 cut(s)	94, 409, 732
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	51, 90, 158, 165, 510, 882
SatI	GCNGC	2 cut(s)	585, 945
Sau3AI	GATC	4 cut(s)	15, 21, 271, 865
Sau96I	GGNCC	2 cut(s)	305, 887
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	22, 431
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	4 cut(s)	112, 547, 674, 925
SinI	GGWCC	2 cut(s)	305, 887
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	708, 821
SmoI	CTYRAG	2 cut(s)	708, 821
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	7 cut(s)	33, 48, 314, 320, 365, 399, 673
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	2 cut(s)	875, 900
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	3 cut(s)	103, 727, 861
TaaI	ACNGT	3 cut(s)	119, 295, 736
TaqI	TCGA	2 cut(s)	31, 280
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	7 cut(s)	33, 48, 314, 320, 365, 399, 673
TatI	WGTACW	2 cut(s)	93, 408
Tru1I	TTAA	6 cut(s)	51, 90, 158, 165, 510, 882
Tru9I	TTAA	6 cut(s)	51, 90, 158, 165, 510, 882
TseI	GCWGC	2 cut(s)	584, 944
TspDTI	ATGAA	5 cut(s)	228, 467, 594, 615, 919
TspGWI	ACGGA	2 cut(s)	900, 935
VpaK11BI	GGWCC	2 cut(s)	305, 887
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	2 cut(s)	249, 263
XspI	CTAG	2 cut(s)	875, 900
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.