Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Forward (+)

4263152 .. 4263562

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG023000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACCGAACTGGAATTACACAACTTTACAGGGGAAGGGGGAGTAGCAATTGCCATGTACAACACCGATGAGTCAATCTGTGCTTTTGTAGAAGCTTCTATGAACACAGCTTATGAGAAAAAGGTGGCCTCTTATAATAGCACAAAAAACACTATTCTTAATAAGTATGATGGAAGGTTCAAGGACATATTTCAAGAAGTTTATGATGCCCATTGGAAATCGAAGTATGAAGCTGCTGGCATATGGTATGAACATCACCTCATTGATGATATGGTGGCTTACGCATTCAAAAGTGAAGGTGGTTATGTTTGGGCATCCAAGAATTATGATGGCGATGTGCAAAGTGATTTCTTAGCTCAAGGTTTTGGATTGATGACATCAGTACTGGTTTGCCCAGATAGAAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

136

Amino Acids

15.42

Weight (kDa)

4.85

Isoelectric Point (pI)

20.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	8 - 133	1.9e-22	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AfaI	GTAC	2 cut(s)	59, 384
AgsI	TTSAA	3 cut(s)	181, 194, 289
AluBI	AGCT	4 cut(s)	95, 110, 233, 356
AluI	AGCT	4 cut(s)	95, 110, 233, 356
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	164, 323
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BmcAI	AGTACT	1 cut(s)	384
BmsI	GCATC	2 cut(s)	196, 323
BpuEI	CTTGAG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	15, 390
BseGI	GGATG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	15, 390
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	57
BspANI	GGCC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	15, 390
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	58, 383
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	95, 110, 128, 233, 278, 356
CviKI_1	RGCY	6 cut(s)	95, 110, 128, 233, 278, 356
CviQI	GTAC	2 cut(s)	58, 383
DdeI	CTNAG	1 cut(s)	352
FaeI	CATG	1 cut(s)	58
FatI	CATG	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	29, 168, 290
HpyCH4V	TGCA	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	15, 222, 371
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	196, 323
MfeI	CAATTG	1 cut(s)	48
MluCI	AATT	3 cut(s)	14, 48, 322
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	2 cut(s)	139, 269
MseI	TTAA	1 cut(s)	159
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	284
NdeI	CATATG	1 cut(s)	242
NlaIII	CATG	1 cut(s)	58
PctI	GAATGC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	135
PsrI	GAACNNNNNNTAC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	59, 384
RsaNI	GTAC	2 cut(s)	58, 383
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	384
SchI	GAGTC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	196, 323
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	3 cut(s)	14, 48, 322
TaqI	TCGA	1 cut(s)	221
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	14, 48, 322
TatI	WGTACW	2 cut(s)	57, 382
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	116, 243, 264
ZrmI	AGTACT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.