Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Reverse (-)

20479691 .. 20480758

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTATTTGTCCCAGAAGGAGACACCCCTACGGAGCGTAATGTCCATGATTTCAAAGGTCCTGGTGTGGCCCTCGCTATGTATAATGTTGATGAGTCTATTCGAGCTTTTGCTGACTCTTCCATGTCAATGGCATTTTCCAAGAAGTGGCCACTATACTTGAGCACCAAAAACACAATTCTTAAGAAATATGATGGCAGGTTTAAGGACGTATTCGAGGAGGTTTATGTGGAAAAGTGGAAGCAGAAGTTTGAAGAAAACTCTATATGGTGTGAGCATCGGCTAATAGATGACATGGTGGCTTATGCACTCAAAAGTGAGGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

109

Amino Acids

12.64

Weight (kDa)

5.38

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	20 - 107	7.2e-13	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	55, 254
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	2 cut(s)	69, 149
AspS9I	GGNCC	2 cut(s)	59, 70
AvaII	GGWCC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 70
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	71, 151
BsiHKAI	GWGCWC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	71, 151
Bsp1286I	GDGCHC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	71, 151
BspMI	ACCTGC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	124
BstAFI	CTTAAG	1 cut(s)	182
BstMAI	GTCTC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	71, 151
BveI	ACCTGC	1 cut(s)	189
Cfr13I	GGNCC	2 cut(s)	59, 70
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	3 cut(s)	47, 124, 295
CviJI	RGCY	5 cut(s)	71, 107, 151, 283, 302
CviKI_1	RGCY	5 cut(s)	71, 107, 151, 283, 302
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	50, 127, 298
FatI	CATG	3 cut(s)	46, 123, 294
HaeIII	GGCC	2 cut(s)	71, 151
Hin1II	CATG	3 cut(s)	50, 127, 298
HinfI	GANTC	2 cut(s)	95, 116
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	50, 127, 298
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	4 cut(s)	27, 48, 75, 184
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	210
MboII	GAAGA	2 cut(s)	111, 266
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	104, 110
MnlI	CCTC	4 cut(s)	83, 211, 214, 313
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	2 cut(s)	183, 204
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
NlaIII	CATG	3 cut(s)	50, 127, 298
PflMI	CCANNNNNTGG	1 cut(s)	147
PleI	GAGTC	2 cut(s)	103, 110
PpsI	GAGTC	2 cut(s)	103, 110
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	59, 70
PspPPI	RGGWCCY	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	183, 204
Sau96I	GGNCC	2 cut(s)	59, 70
SchI	GAGTC	2 cut(s)	104, 110
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	61, 109, 203, 213, 225
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	160, 182
SmoI	CTYRAG	2 cut(s)	160, 182
Sse9I	AATT	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	61
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	103, 216
TasI	AATT	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	183, 204
Tru9I	TTAA	2 cut(s)	183, 204
TspGWI	ACGGA	1 cut(s)	47
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.