Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014699

Physical Location & Seq

Genomic Coordinates Forward (+)

20396910 .. 20399629

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGTCTTCTCCCTCAAAGAGTCCAACTATGGAGCCTCCTCCTGTTCAACAAAGTCATCCGCATCCCAAGGCTTCGAATTCTGTTACCGAAGCTACTGCTACTTGTGGTAGCCCTAGTCATAAGCCACTGCAACAACTTCCACATGAAGCAGCAGCTCGTACTCGTATTCATCATCATGTTGCCAATAATGGTGCCTCATCTTCTGCAGCACAAGAGGCTGATCATCGGTTCTCCGATGAGGAAGAGGAGCTGAACAATTTCAACAACAATCAGAAGAAGCAGCAGGATGCTTTTCTTAGCAGCTTTCCACCTGGATATAGGTTCAACCCTCGTGATGAAGAACTTGTGCGGTATTACCTCCAGAAAAAGATCATGGATGAGCCATTGCCTCCTAACAAGATCATGGAAGTTAATCTCTACCGTCACAATCCTGAGACGCTTGCTGGTAAATATGATACTTATGGAGAAAAAGAATGGTACTTTTTTACTCCAAGGGACCGCAAGTATCGCAATGGTAAGCGACCAAATAGGAAAGCTAGCGATGGTTATTGGAAGGCCACAGGAGCGGACAAATCAATAAAGTCTGGTAATGTAGAGGTTGGTTTTAGAAAAGCTCTCGTTTTCTACAATGGCAAACCTCCAAAGGGAAAAAAGACCAATTGGATCATGCATGAGTATCGAGTTCCTGATTCACGTACTGTCAAAAGGACTGAAAATGACATGAGGTTGGATAATTGGGTGCTCTGTAGAATTTATAAGAAAGCTGATAACAAGAACAAAATTCAGGAAGCAGATCTTGCTGAAGAAAATATCTCTATGTCAATACTAGATGACACAGAGATGGAGATGAACGGTCAAGTTGATAACACTCAAGCAACGAAATCTAAAGAAGAATACCCTCACACCATTGCTCATCCACCATTGGAGTTTGACAGGGCATATTCTAATTTTGCATATCATTATACTTCATACCCGGATCAACCTATGATTGATGCACTTAGCAACAACATGCGTCATCACTTAATCCAACCAGTTGCTTTCGATTCTAAGGATAGTTATGGAAATATGTATCATTCGCTGCCGACTCGTGGATCTTCTTCAGCAATGCAATCTCTTGATGAAAACTGTATAGTGCCATTCTCTGAACATAAGCATGGGTGTAGTGTGCATCTAATTGACATGACTTCAGAATCCGTGGTTTGTAAAGAAGAAGGATCAGATCAAAAATATGGTGTACAATTTCCGGGTCAAAAATATGTTGTGCAATCTCCTGAACAAGAAAAGACACATTGTTATGGAAAGAGTGTCCAACCAAGTGATGCAGTTGATAGTAGACATAATCCATCAACACCTTGTCTTGATCAAAAGAGCATTCAACAAGAAATTGGTAAGTCTCTATTATCACCACCATCTGATGATCTACCATATTGCATACAAGAACCAGATGACGAACATGATAATATCTTGTTTAGTGATTCATACTTTCGGTATTCGGAAGTTTTTCCATGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

505

Amino Acids

57.68

Weight (kDa)

6.07

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	103 - 228	3.3e-45	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28570 FvH4_5g29430
malus_domestica	MD03G1172900.v1.1 MD11G1190900.v1.1
prunus_persica	Prupe.4G253600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052571
rosa_laevigata	RLG00000034811
rosa_multiflora	Rmu_sc0000694.1_g000026 Rmu_sc0002311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00028470 Rroxscaffold_4G00296130
rosa_rugosa	Rorug05G0270800
rosa_samantha	Rh5AG343800 Rh5BG354500 Rh5CG380300 Rh5DG370000
rosa_wichuraiana	Rw5G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	1333
AciI	CCGC	4 cut(s)	59, 349, 499, 566
AclWI	GGATC	4 cut(s)	671, 984, 1099, 1222
AcsI	RAATTY	3 cut(s)	76, 750, 780
AcuI	CTGAAG	3 cut(s)	822, 1083, 1170
AfaI	GTAC	4 cut(s)	160, 479, 697, 1236
AfiI	CCNNNNNNNGG	2 cut(s)	644, 1088
AgsI	TTSAA	4 cut(s)	47, 262, 325, 1376
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	7 cut(s)	92, 155, 250, 303, 536, 614, 764
AluI	AGCT	7 cut(s)	92, 155, 250, 303, 536, 614, 764
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	2 cut(s)	428, 1398
AlwI	GGATC	4 cut(s)	671, 984, 1099, 1222
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	6 cut(s)	149, 152, 206, 280, 300, 1078
ApoI	RAATTY	3 cut(s)	76, 750, 780
Asp700I	GAANNNNTTC	2 cut(s)	257, 1500
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	2 cut(s)	974, 1245
AsuHPI	GGTGA	1 cut(s)	1395
AsuII	TTCGAA	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	191
BauI	CACGAG	2 cut(s)	330, 1086
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	6 cut(s)	161, 164, 218, 292, 312, 1065
BccI	CCATC	4 cut(s)	536, 835, 1351, 1417
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 659, 693
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	2 cut(s)	220, 1360
BcnI	CCSGG	2 cut(s)	974, 1245
BcoDI	GTCTC	2 cut(s)	428, 1398
BfaI	CTAG	3 cut(s)	114, 537, 827
BfmI	CTRYAG	2 cut(s)	204, 745
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	6 cut(s)	150, 153, 207, 281, 301, 1079
BlsI	GCNGC	6 cut(s)	151, 154, 208, 282, 302, 1080
Bme1390I	CCNGG	3 cut(s)	312, 974, 1245
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	33, 193, 497
BmrFI	CCNGG	3 cut(s)	312, 974, 1245
BmsI	GCATC	5 cut(s)	70, 277, 982, 1177, 1309
BmtI	GCTAGC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	855
BpuMI	CCSGG	2 cut(s)	974, 1245
BsaAI	YACGTR	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	66, 491, 1194, 1505
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 1088
Bse1I	ACTGG	1 cut(s)	1031
Bse3DI	GCAATG	4 cut(s)	383, 517, 906, 1110
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	4 cut(s)	66, 491, 1194, 1505
BseGI	GGATG	5 cut(s)	55, 61, 292, 382, 913
BseLI	CCNNNNNNNGG	2 cut(s)	644, 1088
BseMI	GCAATG	4 cut(s)	383, 517, 906, 1110
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	1031
BseRI	GAGGAG	2 cut(s)	27, 260
BseXI	GCAGC	6 cut(s)	161, 164, 218, 292, 312, 1065
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	744
BsiSI	CCGG	2 cut(s)	974, 1244
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	644, 1088
BsmAI	GTCTC	2 cut(s)	428, 1398
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	1371
BsnI	GGCC	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp19I	CCATGG	1 cut(s)	1505
BspACI	CCGC	4 cut(s)	59, 349, 499, 566
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	33, 193, 497
BspMAI	CTGCAG	1 cut(s)	208
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	4 cut(s)	671, 984, 1099, 1222
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	4 cut(s)	383, 517, 906, 1110
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	1 cut(s)	1031
BssECI	CCNNGG	4 cut(s)	66, 491, 1194, 1505
BssSI	CACGAG	2 cut(s)	330, 1086
BssT1I	CCWWGG	3 cut(s)	66, 491, 1505
Bst2BI	CACGAG	2 cut(s)	330, 1086
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	4 cut(s)	422, 700, 854, 1127
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	1 cut(s)	1234
BstBAI	YACGTR	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	441, 538
BstDEI	CTNAG	4 cut(s)	296, 432, 998, 1047
BstDSI	CCRYGG	2 cut(s)	1194, 1505
BstF5I	GGATG	5 cut(s)	55, 61, 292, 382, 913
BstMAI	GTCTC	2 cut(s)	428, 1398
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 507, 563, 797
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	1012
BstSCI	CCNGG	3 cut(s)	310, 972, 1243
BstSFI	CTRYAG	2 cut(s)	204, 745
BstV1I	GCAGC	6 cut(s)	161, 164, 218, 292, 312, 1065
BstX2I	RGATCY	2 cut(s)	793, 1091
BstYI	RGATCY	2 cut(s)	793, 1091
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	2 cut(s)	1194, 1505
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	5 cut(s)	55, 61, 292, 382, 913
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	441, 538
Cfr13I	GGNCC	1 cut(s)	496
CseI	GACGC	2 cut(s)	445, 1001
Csp6I	GTAC	4 cut(s)	159, 478, 696, 1235
CviQI	GTAC	4 cut(s)	159, 478, 696, 1235
DdeI	CTNAG	4 cut(s)	296, 432, 998, 1047
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	3 cut(s)	66, 491, 1505
Eco47I	GGWCC	1 cut(s)	496
Eco57I	CTGAAG	3 cut(s)	822, 1083, 1170
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	3 cut(s)	66, 491, 1505
EcoT22I	ATGCAT	1 cut(s)	672
ErhI	CCWWGG	3 cut(s)	66, 491, 1505
Esp3I	CGTCTC	1 cut(s)	428
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	1 cut(s)	509
FbaI	TGATCA	2 cut(s)	220, 1360
FblI	GTMKAC	1 cut(s)	1333
Fnu4HI	GCNGC	6 cut(s)	150, 153, 207, 281, 301, 1079
FokI	GGATG	5 cut(s)	42, 48, 299, 389, 900
Fsp4HI	GCNGC	6 cut(s)	150, 153, 207, 281, 301, 1079
FspBI	CTAG	3 cut(s)	114, 537, 827
GluI	GCNGC	6 cut(s)	150, 153, 207, 281, 301, 1079
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	2 cut(s)	974, 1244
HgaI	GACGC	2 cut(s)	445, 1001
HinfI	GANTC	6 cut(s)	19, 689, 1043, 1084, 1190, 1475
HpaII	CCGG	2 cut(s)	974, 1244
HphI	GGTGA	1 cut(s)	1395
Hpy166II	GTNNAC	2 cut(s)	1235, 1334
Hpy188I	TCNGA	7 cut(s)	235, 273, 1144, 1189, 1219, 1414, 1495
Hpy188III	TCNNGA	8 cut(s)	332, 361, 431, 686, 785, 1115, 1271, 1358
Hpy8I	GTNNAC	2 cut(s)	1235, 1334
HpyAV	CCTTC	2 cut(s)	547, 1205
HpyCH4III	ACNGT	4 cut(s)	422, 700, 854, 1127
HpyCH4IV	ACGT	1 cut(s)	694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 507, 563, 797
HpyF3I	CTNAG	4 cut(s)	296, 432, 998, 1047
HpySE526I	ACGT	1 cut(s)	694
Ksp22I	TGATCA	2 cut(s)	220, 1360
LmnI	GCTCC	3 cut(s)	31, 247, 563
Lsp1109I	GCAGC	6 cut(s)	161, 164, 218, 292, 312, 1065
LweI	GCATC	5 cut(s)	70, 277, 982, 1177, 1309
MaeI	CTAG	3 cut(s)	114, 537, 827
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	2 cut(s)	82, 422
MbiI	CCGCTC	1 cut(s)	566
MboII	GAAGA	9 cut(s)	192, 254, 286, 350, 815, 902, 1086, 1089, 1220
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	2 cut(s)	793, 1091
MhlI	GDGCHC	1 cut(s)	744
MlyI	GAGTC	2 cut(s)	28, 1078
MmeI	TCCRAC	4 cut(s)	47, 708, 1051, 1333
Mph1103I	ATGCAT	1 cut(s)	672
MroXI	GAANNNNTTC	2 cut(s)	257, 1500
MseI	TTAA	2 cut(s)	411, 1022
MslI	CAYNNNNRTG	5 cut(s)	174, 839, 1152, 1293, 1510
MspI	CCGG	2 cut(s)	974, 1244
MspR9I	CCNGG	3 cut(s)	312, 974, 1245
MunI	CAATTG	1 cut(s)	658
Mva1269I	GAATGC	1 cut(s)	1371
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	215, 507, 563, 797
NciI	CCSGG	2 cut(s)	974, 1245
NcoI	CCATGG	1 cut(s)	1505
NheI	GCTAGC	1 cut(s)	536
NlaIV	GGNNCC	3 cut(s)	33, 193, 497
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	1 cut(s)	1012
NspV	TTCGAA	1 cut(s)	74
PctI	GAATGC	1 cut(s)	1371
PdmI	GAANNNNTTC	2 cut(s)	257, 1500
PfeI	GAWTC	4 cut(s)	689, 1043, 1190, 1475
PkrI	GCNGC	6 cut(s)	151, 154, 208, 282, 302, 1080
PleI	GAGTC	2 cut(s)	27, 1078
PpsI	GAGTC	2 cut(s)	27, 1078
Ppu21I	YACGTR	1 cut(s)	695
PsiI	TTATAA	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	33, 193, 497
PspPI	GGNCC	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	793, 1091
RsaI	GTAC	4 cut(s)	160, 479, 697, 1236
RsaNI	GTAC	4 cut(s)	159, 478, 696, 1235
RseI	CAYNNNNRTG	5 cut(s)	174, 839, 1152, 1293, 1510
SaqAI	TTAA	2 cut(s)	411, 1022
SatI	GCNGC	6 cut(s)	150, 153, 207, 281, 301, 1079
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	2 cut(s)	28, 1078
ScrFI	CCNGG	3 cut(s)	312, 974, 1245
SduI	GDGCHC	1 cut(s)	744
SfaNI	GCATC	5 cut(s)	70, 277, 982, 1177, 1309
SfcI	CTRYAG	2 cut(s)	204, 745
SfuI	TTCGAA	1 cut(s)	74
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	5 cut(s)	174, 839, 1152, 1293, 1510
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
SsiI	CCGC	4 cut(s)	59, 349, 499, 566
SspMI	CTAG	3 cut(s)	114, 537, 827
StyD4I	CCNGG	3 cut(s)	310, 972, 1243
StyI	CCWWGG	3 cut(s)	66, 491, 1505
TaaI	ACNGT	4 cut(s)	422, 700, 854, 1127
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	3 cut(s)	74, 679, 1041
TatI	WGTACW	1 cut(s)	1234
TfiI	GAWTC	4 cut(s)	689, 1043, 1190, 1475
Tru1I	TTAA	2 cut(s)	411, 1022
Tru9I	TTAA	2 cut(s)	411, 1022
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	6 cut(s)	149, 152, 206, 280, 300, 1078
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	7 cut(s)	158, 159, 351, 863, 957, 1134, 1467
TspGWI	ACGGA	1 cut(s)	1183
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	3 cut(s)	76, 750, 780
XceI	RCATGY	1 cut(s)	1012
XmiI	GTMKAC	1 cut(s)	1333
XmnI	GAANNNNTTC	2 cut(s)	257, 1500
XspI	CTAG	3 cut(s)	114, 537, 827
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.