MD11G1190900.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014699
Physical Location & Seq
Forward (+)
27021408 .. 27023373
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1190900.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGTCTTCTCCCTCAAAGAGTCCAAGTATGGAGCCTGTTGGGCAAAGTCATCCGCATCACAAGGCTTTTGTTGCTACTATTACTCAACAGGTGGCTTCTTATAGCCTTAGCCCTAAGAAGCGGTCACCTGCACAAGGTGATCAAGGTCAATTCACTCCGGCGAACGAGAGTGGTGCTTCTTTGACAGCCAACGTGTCCGCTGCCGCTGATGGTGCGGATCATGATCTTTCAGAAGACGAGGCAAACAGTTTCAATAACAACCTGAAAAAGGATCAAGATGAGTTTTTCAATTCCTTCCCACCTGGCTATAGGTTCAACCCATTTGATGGTGAACTTATTGTGCATTATCTCATGAAAAAGGTCTTGGATCAGCCCTTGCCGCCCAACCGGATCTTTGAAGTTAATCTATACCGCCACAATCCCGAAGTGCTTGCTGAAAAATATGAGAAATATGGGGAGAAAGAATGGTATTTTTTTACTCCAAGGGACCGGAAGTATCGCAATGGAAGTCGCCCAAAGAGGGCAGCTGGGGATGGATATTGGAAGGCGACTGGAGCTGACAAGGAAGTGAAGTCATCTGATGGAGCTGTTGTTGGATGGAGAAAGGCTCTGGTTTTCTATAGGGGCAAACCCCCAAAGGGTGACAAGACCAACTGGATCATGCACGAGTTTCGAGTCAAGGATTCTCCTGTTCGAAGCAGAAGGGGTGAGAATGACATGAGGTTGGATAATTGGGTACTCTGTAGAATTTACAAGAAAGACAAAAATGGCAAAAGATGTGATAGTCGAAATCATGCTGAAATAATTTCTCCATTTTCGCATAGAATGAATGACGAAATCATGGAGATTGAGATGAGGGGCGATATTGTTGATCCATTACCTGAGTATGATCCTGCACTGGAGTATGACCACAAATACTCAAATAAAGGATATTCCCATATGGCATCCCTGCCAAACATTTGCGGTGGGATCCCAGTTAACATGATTTGCAATAATCAAATTCAATCAGTTGATGCAGCCTCTATGAATGCTTGCTGCTATGCAAATATGGAGCACTCGCAACCACTATGTGTTAGACCTCCATCGATGTCTTCTGAGAGTGTTCTCGGGCCTTATAGATATATGGATCAATCAACTATACTTCCAGATGACATGATGTTCGACATGAAGGGGTTTGGACATAGCCCTTACAGTACAAATAATTATCCAGCGCAATTCTCATCTTTGGATCATGTTTTTCCTTATACGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

418

Amino Acids

47.38

Weight (kDa)

6.54

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 100 - 226 2.2e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 326
AciI CCGC 8 cut(s) 53, 121, 198, 204, 215, 380, 412, 963
AcsI RAATTY 2 cut(s) 747, 999
AdeI CACNNNGTG 2 cut(s) 137, 1070
AfaI GTAC 2 cut(s) 738, 1195
AfiI CCNNNNNNNGG 5 cut(s) 134, 268, 326, 520, 638
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 5 cut(s) 253, 289, 316, 398, 1004
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 3 cut(s) 527, 557, 587
AluI AGCT 3 cut(s) 527, 557, 587
Alw21I GWGCWC 1 cut(s) 1056
Ama87I CYCGRG 1 cut(s) 1106
AoxI GGCC 1 cut(s) 1109
ApeKI GCWGC 4 cut(s) 200, 524, 1016, 1035
ApoI RAATTY 2 cut(s) 747, 999
ArsI GACNNNNNNTTYG 2 cut(s) 1142, 1174
AspLEI GCGC 1 cut(s) 1213
AspS9I GGNCC 2 cut(s) 487, 1109
AsuHPI GGTGA 5 cut(s) 117, 149, 341, 653, 719
AsuII TTCGAA 1 cut(s) 694
AvaI CYCGRG 1 cut(s) 1106
AvaII GGWCC 1 cut(s) 487
BamHI GGATCC 1 cut(s) 969
BauI CACGAG 1 cut(s) 665
BbsI GAAGAC 2 cut(s) 240, 1083
Bbv12I GWGCWC 1 cut(s) 1056
BbvI GCAGC 4 cut(s) 187, 536, 1022, 1028
BccI CCATC 6 cut(s) 203, 320, 527, 575, 591, 1090
BcgI CGANNNNNNTGC 6 cut(s) 155, 189, 413, 447, 653, 687
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 139
BfmI CTRYAG 3 cut(s) 307, 619, 742
BfuAI ACCTGC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 40
BisI GCNGC 6 cut(s) 201, 204, 380, 525, 1017, 1036
BlsI GCNGC 6 cut(s) 202, 205, 381, 526, 1018, 1037
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 1106
BmgT120I GGNCC 2 cut(s) 487, 1109
BmiI GGNNCC 3 cut(s) 33, 488, 971
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 968
BmsI GCATC 3 cut(s) 64, 953, 1003
BmuI ACTGGG 1 cut(s) 968
BpiI GAAGAC 2 cut(s) 240, 1083
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpmI CTGGAG 2 cut(s) 573, 920
Bpu10I CCTNAGC 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 694
Bsa29I ATCGAT 1 cut(s) 1085
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 2 cut(s) 387, 489
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 268, 326, 520, 638
Bse1I ACTGG 4 cut(s) 556, 659, 903, 974
Bse3DI GCAATG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 1085
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 4 cut(s) 49, 538, 602, 944
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 5 cut(s) 134, 268, 326, 520, 638
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 873, 1086
BseNI ACTGG 4 cut(s) 556, 659, 903, 974
BseXI GCAGC 4 cut(s) 187, 536, 1022, 1028
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 2 cut(s) 114, 879
BshFI GGCC 1 cut(s) 1111
BshVI ATCGAT 1 cut(s) 1085
BsiHKAI GWGCWC 1 cut(s) 1056
BsiHKCI CYCGRG 1 cut(s) 1106
BsiSI CCGG 3 cut(s) 158, 388, 490
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 5 cut(s) 134, 268, 326, 520, 638
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 1 cut(s) 1111
BsoBI CYCGRG 1 cut(s) 1106
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 1 cut(s) 1056
BspACI CCGC 8 cut(s) 53, 121, 198, 204, 215, 380, 412, 963
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 2 cut(s) 874, 1087
BspDI ATCGAT 1 cut(s) 1085
BspHI TCATGA 2 cut(s) 220, 351
BspLI GGNNCC 3 cut(s) 33, 488, 971
BspMI ACCTGC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 4 cut(s) 556, 659, 903, 974
BssECI CCNNGG 1 cut(s) 482
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 248, 1193
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 2 cut(s) 432, 1033
BstDEI CTNAG 4 cut(s) 107, 114, 882, 1095
BstEII GGTNACC 1 cut(s) 123
BstENI CCTNNNNNAGG 2 cut(s) 132, 266
BstF5I GGATG 4 cut(s) 49, 538, 602, 944
BstHHI GCGC 1 cut(s) 1213
BstMWI GCNNNNNNNGC 5 cut(s) 40, 71, 212, 379, 554
BstNI CCWGG 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 3 cut(s) 307, 619, 742
BstV1I GCAGC 4 cut(s) 187, 536, 1022, 1028
BstV2I GAAGAC 2 cut(s) 240, 1083
BstX2I RGATCY 2 cut(s) 390, 969
BstYI RGATCY 2 cut(s) 390, 969
Bsu15I ATCGAT 1 cut(s) 1085
BsuRI GGCC 1 cut(s) 1111
BsuTUI ATCGAT 1 cut(s) 1085
BtsCI GGATG 4 cut(s) 49, 538, 602, 944
BtsIMutI CAGTG 1 cut(s) 896
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 432, 1033
CciI TCATGA 2 cut(s) 220, 351
CfoI GCGC 1 cut(s) 1213
Cfr13I GGNCC 2 cut(s) 487, 1109
ClaI ATCGAT 1 cut(s) 1085
Csp6I GTAC 2 cut(s) 737, 1194
CviQI GTAC 2 cut(s) 737, 1194
DdeI CTNAG 4 cut(s) 107, 114, 882, 1095
DraIII CACNNNGTG 2 cut(s) 137, 1070
Eco130I CCWWGG 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 1106
Eco91I GGTNACC 1 cut(s) 123
EcoNI CCTNNNNNAGG 2 cut(s) 132, 266
EcoO65I GGTNACC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaqI GGGAC 1 cut(s) 500
FauNDI CATATG 1 cut(s) 939
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 6 cut(s) 201, 204, 380, 525, 1017, 1036
FokI GGATG 4 cut(s) 36, 545, 609, 931
Fsp4HI GCNGC 6 cut(s) 201, 204, 380, 525, 1017, 1036
GlaI GCGC 1 cut(s) 1212
GluI GCNGC 6 cut(s) 201, 204, 380, 525, 1017, 1036
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 2 cut(s) 573, 920
HaeIII GGCC 1 cut(s) 1111
HapII CCGG 3 cut(s) 158, 388, 490
HhaI GCGC 1 cut(s) 1213
Hin6I GCGC 1 cut(s) 1211
HinP1I GCGC 1 cut(s) 1211
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HinfI GANTC 3 cut(s) 19, 675, 683
HpaI GTTAAC 1 cut(s) 979
HpaII CCGG 3 cut(s) 158, 388, 490
HphI GGTGA 5 cut(s) 117, 149, 341, 653, 719
Hpy166II GTNNAC 2 cut(s) 332, 979
Hpy188I TCNGA 3 cut(s) 232, 580, 1096
Hpy188III TCNNGA 5 cut(s) 221, 275, 352, 422, 1145
Hpy8I GTNNAC 2 cut(s) 332, 979
HpyAV CCTTC 4 cut(s) 304, 538, 696, 1162
HpyCH4III ACNGT 2 cut(s) 248, 1193
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 7 cut(s) 131, 343, 664, 896, 990, 1016, 1043
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 71, 212, 379, 554
HpyF3I CTNAG 4 cut(s) 107, 114, 882, 1095
HpySE526I ACGT 1 cut(s) 192
HspAI GCGC 1 cut(s) 1211
Ksp22I TGATCA 1 cut(s) 139
KspAI GTTAAC 1 cut(s) 979
LmnI GCTCC 4 cut(s) 31, 554, 584, 1051
Lsp1109I GCAGC 4 cut(s) 187, 536, 1022, 1028
LweI GCATC 3 cut(s) 64, 953, 1003
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 123, 641
MboII GAAGA 2 cut(s) 245, 1083
MflI RGATCY 2 cut(s) 390, 969
MhlI GDGCHC 1 cut(s) 1056
MluCI AATT 8 cut(s) 149, 289, 730, 747, 804, 999, 1201, 1214
MlyI GAGTC 2 cut(s) 28, 684
MmeI TCCRAC 2 cut(s) 574, 705
MnlI CCTC 7 cut(s) 22, 232, 513, 714, 849, 1030, 1089
MseI TTAA 2 cut(s) 402, 978
MspA1I CMGCKG 3 cut(s) 200, 206, 527
MspI CCGG 3 cut(s) 158, 388, 490
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 5 cut(s) 40, 71, 212, 379, 554
NdeI CATATG 1 cut(s) 939
NlaIV GGNNCC 3 cut(s) 33, 488, 971
NmuCI GTSAC 2 cut(s) 123, 641
NspV TTCGAA 1 cut(s) 694
PagI TCATGA 2 cut(s) 220, 351
PaqCI CACCTGC 1 cut(s) 136
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 6 cut(s) 202, 205, 381, 526, 1018, 1037
PleI GAGTC 2 cut(s) 27, 683
PpsI GAGTC 2 cut(s) 27, 683
Psp6I CCWGG 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 33, 488, 971
PspPI GGNCC 2 cut(s) 487, 1109
PsuI RGATCY 2 cut(s) 390, 969
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 738, 1195
RsaNI GTAC 2 cut(s) 737, 1194
SaqAI TTAA 2 cut(s) 402, 978
SatI GCNGC 6 cut(s) 201, 204, 380, 525, 1017, 1036
Sau96I GGNCC 2 cut(s) 487, 1109
SchI GAGTC 2 cut(s) 28, 684
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 1056
SfaNI GCATC 3 cut(s) 64, 953, 1003
SfcI CTRYAG 3 cut(s) 307, 619, 742
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 487
Sse9I AATT 8 cut(s) 149, 289, 730, 747, 804, 999, 1201, 1214
SsiI CCGC 8 cut(s) 53, 121, 198, 204, 215, 380, 412, 963
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 248, 1193
TaiI ACGT 1 cut(s) 195
TaqI TCGA 5 cut(s) 673, 694, 787, 1085, 1161
TasI AATT 8 cut(s) 149, 289, 730, 747, 804, 999, 1201, 1214
TatI WGTACW 1 cut(s) 1193
TauI GCSGC 2 cut(s) 206, 382
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 2 cut(s) 402, 978
Tru9I TTAA 2 cut(s) 402, 978
TscAI CASTG 1 cut(s) 903
TseFI GTSAC 2 cut(s) 123, 641
TseI GCWGC 4 cut(s) 200, 524, 1016, 1035
Tsp45I GTSAC 2 cut(s) 123, 641
TspDTI ATGAA 4 cut(s) 368, 842, 1040, 1181
TspRI CASTG 1 cut(s) 903
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 487
XagI CCTNNNNNAGG 2 cut(s) 132, 266
XapI RAATTY 2 cut(s) 747, 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.