Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014699

Physical Location & Seq

Genomic Coordinates Reverse (-)

16195591 .. 16200226

Gene Structure 4636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGGAAGTGGGTGGGCTGGGTCCTACACTGTGGCTTGGACTCTGTCTGCTAGCGATTGGGGCTGGATTACCCTATTGCTAGGGGATTGGATGTTTGATCGTTTGCCGACTCACATGTACTGCATCTGCAGTTCTGGGGACAAAAAAAGACTGGAGTTGTTCAAGATTCAGAGAGTAATTCGTGGCAATGGCAACGACAATGTCACATCAGAATCAATGATGAGGGCATGTTCTGATCAGAAATGTGGTAGGCAATTTCCGGATCAAAAATTTATTGTGCAATCACTTGATGGTAGACCACAACCAATGACATTTTCTCATGGAAAAAGTAGAAAAAGTGTCCAACCAGATGATGCAGTTGATAGTAAACCTTCATCAACGCCTTCTTCTTTACTTGATCAAAAGAGTATTGAACAAGGAATTGGTAAGCCTCTATTACCACTATTTGATCAAGGTCTACAATACGTAGAAGAATCAAATGAAGATCATAATCTCGTGTTTGGTTATCCACCATTTGCGTCTTTGGAAACTTTTTCATGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

182

Amino Acids

20.39

Weight (kDa)

5.58

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28570 FvH4_5g29430
malus_domestica	MD03G1172900.v1.1 MD11G1190900.v1.1
prunus_persica	Prupe.4G253600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052571
rosa_laevigata	RLG00000034811
rosa_multiflora	Rmu_sc0000694.1_g000026 Rmu_sc0002311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00028470 Rroxscaffold_4G00296130
rosa_rugosa	Rorug05G0270800
rosa_samantha	Rh5AG343800 Rh5BG354500 Rh5CG380300 Rh5DG370000
rosa_wichuraiana	Rw5G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	298, 460
AccIII	TCCGGA	1 cut(s)	262
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	166, 416
AjuI	GAANNNNNNNTTGG	4 cut(s)	301, 333, 408, 440
AlwI	GGATC	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	262
AoxI	GGCC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	24, 543
AsuNHI	GCTAGC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	497
BccI	CCATC	1 cut(s)	287
BclI	TGATCA	3 cut(s)	238, 400, 451
BfaI	CTAG	2 cut(s)	54, 83
BfmI	CTRYAG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 543
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	2 cut(s)	135, 346
BmtI	GCTAGC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	262
BseGI	GGATG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	159
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	544
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
BspANI	GGCC	1 cut(s)	544
BspEI	TCCGGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	6 cut(s)	103, 241, 268, 403, 454, 490
BstMBI	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	121, 234
BstSFI	CTRYAG	1 cut(s)	130
BstSNI	TACGTA	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	24, 543
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	4 cut(s)	118, 231, 323, 540
CviJI	RGCY	6 cut(s)	5, 20, 38, 66, 433, 544
CviKI_1	RGCY	6 cut(s)	5, 20, 38, 66, 433, 544
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	6 cut(s)	102, 240, 267, 402, 453, 489
DpnII	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
Eco105I	TACGTA	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	24
FaeI	CATG	4 cut(s)	121, 234, 326, 543
FaiI	YATR	5 cut(s)	119, 232, 324, 492, 541
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	117, 230, 322, 539
FbaI	TGATCA	3 cut(s)	238, 400, 451
FblI	GTMKAC	2 cut(s)	298, 460
FokI	GGATG	1 cut(s)	106
FspBI	CTAG	2 cut(s)	54, 83
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	1 cut(s)	263
HgaI	GACGC	1 cut(s)	510
Hin1II	CATG	4 cut(s)	121, 234, 326, 543
HinfI	GANTC	5 cut(s)	43, 112, 169, 215, 476
HpaII	CCGG	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	299, 371, 461
Hpy188I	TCNGA	4 cut(s)	174, 214, 238, 243
Hpy188III	TCNNGA	2 cut(s)	166, 263
Hpy8I	GTNNAC	3 cut(s)	299, 371, 461
HpyAV	CCTTC	2 cut(s)	384, 396
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	4 cut(s)	126, 132, 283, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	121, 234, 326, 543
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	3 cut(s)	238, 400, 451
Kzo9I	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
LpnPI	CCDG	6 cut(s)	6, 52, 123, 140, 276, 363
LweI	GCATC	2 cut(s)	135, 346
MaeI	CTAG	2 cut(s)	54, 83
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	6 cut(s)	102, 240, 267, 402, 453, 489
MboI	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
MboII	GAAGA	3 cut(s)	381, 485, 497
MluCI	AATT	4 cut(s)	180, 257, 272, 423
MlyI	GAGTC	2 cut(s)	37, 106
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	2 cut(s)	219, 444
MroI	TCCGGA	1 cut(s)	262
MspI	CCGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	4 cut(s)	121, 234, 326, 543
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	121, 234
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	169, 215, 476
PflFI	GACNNNGTC	2 cut(s)	46, 203
PleI	GAGTC	2 cut(s)	37, 106
PpsI	GAGTC	2 cut(s)	37, 106
Ppu21I	YACGTR	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	24
PscI	ACATGT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	24, 543
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	134
PsyI	GACNNNGTC	2 cut(s)	46, 203
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	6 cut(s)	100, 238, 265, 400, 451, 487
Sau96I	GGNCC	2 cut(s)	24, 543
SchI	GAGTC	2 cut(s)	37, 106
SetI	ASST	3 cut(s)	376, 460, 471
SfaNI	GCATC	2 cut(s)	135, 346
SfcI	CTRYAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	24
SnaBI	TACGTA	1 cut(s)	469
Sse9I	AATT	4 cut(s)	180, 257, 272, 423
SspMI	CTAG	2 cut(s)	54, 83
TaaI	ACNGT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	471
TasI	AATT	4 cut(s)	180, 257, 272, 423
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	169, 215, 476
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	366, 498, 528
TspRI	CASTG	1 cut(s)	37
Tth111I	GACNNNGTC	2 cut(s)	46, 203
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	2 cut(s)	121, 234
XmiI	GTMKAC	2 cut(s)	298, 460
XspI	CTAG	2 cut(s)	54, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.