Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014699

Physical Location & Seq

Genomic Coordinates Reverse (-)

17380187 .. 17382157

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGCCTGTTGAACAAAGTCATCCGCATAGCAAGGCTTCTGTTACTTCCCAAGTGGCTTCTTATAGCCTCATCAACAAGCAATCTCATGCTCAAGCTCATCTCACTCATGATCTAACTCAACCAAACGAGCCTGGAAATTCTTTGATAACCAGTGTGTCTGCGGGCGCAGAGCTTTCGGATGATGAGTCAAATAGCTTCAATAACAATCTGAAAAATGAGGAAGATGAGTTTTTCGATTCGTTCCCGCCCGGTTATCGGTTCAACCCTCTCGATGAGGAACTTGTTGTGCATTATCTGAAGAAGAAGGTCTTGGATCAGCCCTTGCCTCCCAACCGGATCATTGAAGTTAACCTATACCGCCACAATCCGGAATTTCTTGCTGAAAAATATAGGAAATATGGAGAAGCTGAATGGTACTTTTTTACTCCGAGGGACCGGAAGTATAAAAATGGTAGTCGGCCGAAGAGAGCAGCTGGTAGTGGATACTGGAAGGCCACTGGAGCTGACAAAGCAGTTAGGTCTAATGGTGCTCTTGTTGGATTCAGAAAGGCTCTTGTGTTTTACAGAGGGAAACCTCCAAAGGGTGACAAGACCAACTGGATCATGCATGAGTTTCGAGTCAAGGATTCTCCCGTTCGAAGAAAAAGGGGGGAGAATGACATGAGGTTGGATAATTGGGTACTCTGTAGAATTTATAAGAAAGTTGATAAGAACAGCAAAAGATGTGAAACTCGAAATCATGTCGAGGATCCTCTATCCCCGCAGCCCCAGATTATAAATGGGGAAGGCATGGAGATGGAGATGGAGATGGAGATGAGCACCATTTTTGATCCTATGGTGGAGTATGACAACAAATACTCAATCATGCAAAATGTTTATGGTGTCTCACATAATGGCATGGTTCATAGCCAACTGCAAGCAGTCCGCATGAATGAAGTGCCCAGTTATCCAAATATTGGGCACCCACAAGCAATTGGTGCTAGAGCTTCATCCATGCCACTGTTGCCTGACAGTCTGCTCGAGTCTAGGTACATTGATGAATCAACTATCCATCCAGACGACTTGTACAACTTGAAGGCATTTGAAAGAAGTCTCTACGATACTTACCAAAGGCAATTCCCACCTGTAGAGAATTTTTATCCCTATCTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

386

Amino Acids

44.51

Weight (kDa)

6.38

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28570 FvH4_5g29430
malus_domestica	MD03G1172900.v1.1 MD11G1190900.v1.1
prunus_persica	Prupe.4G253600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052571
rosa_laevigata	RLG00000034811
rosa_multiflora	Rmu_sc0000694.1_g000026 Rmu_sc0002311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00028470 Rroxscaffold_4G00296130
rosa_rugosa	Rorug05G0270800
rosa_samantha	Rh5AG343800 Rh5BG354500 Rh5CG380300 Rh5DG370000
rosa_wichuraiana	Rw5G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	699, 779
AccB1I	GGYRCC	1 cut(s)	963
AccB7I	CCANNNNNTGG	1 cut(s)	959
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	6 cut(s)	26, 164, 248, 361, 764, 928
AclWI	GGATC	6 cut(s)	324, 347, 611, 746, 759, 827
AcoI	YGGCCR	1 cut(s)	461
AcsI	RAATTY	4 cut(s)	139, 374, 693, 1135
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	4 cut(s)	419, 684, 1034, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	258, 370, 584, 959
AgsI	TTSAA	6 cut(s)	14, 202, 265, 347, 1078, 1088
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	7 cut(s)	98, 175, 198, 410, 476, 506, 989
AluI	AGCT	7 cut(s)	98, 175, 198, 410, 476, 506, 989
Alw21I	GWGCWC	2 cut(s)	535, 824
Alw26I	GTCTC	2 cut(s)	892, 1100
AlwI	GGATC	6 cut(s)	324, 347, 611, 746, 759, 827
Ama87I	CYCGRG	1 cut(s)	1022
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	2 cut(s)	461, 495
ApeKI	GCWGC	2 cut(s)	473, 766
ApoI	RAATTY	4 cut(s)	139, 374, 693, 1135
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	599
AsuII	TTCGAA	1 cut(s)	640
AvaI	CYCGRG	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	2 cut(s)	945, 966
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	535, 824
BbvI	GCAGC	2 cut(s)	485, 778
BccI	CCATC	4 cut(s)	793, 799, 805, 1062
BcgI	CGANNNNNNTGC	4 cut(s)	159, 193, 599, 633
BciT130I	CCWGG	1 cut(s)	135
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	892, 1100
BfaI	CTAG	2 cut(s)	984, 1029
BfmI	CTRYAG	2 cut(s)	688, 1128
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	474, 767
BlsI	GCNGC	2 cut(s)	475, 768
Bme1390I	CCNGG	2 cut(s)	135, 252
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	1022
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	4 cut(s)	6, 437, 753, 965
BmrFI	CCNGG	2 cut(s)	135, 252
BmrI	ACTGGG	1 cut(s)	939
BmuI	ACTGGG	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	640
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	3 cut(s)	336, 370, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 370, 584, 959
Bse1I	ACTGG	5 cut(s)	153, 494, 505, 605, 945
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	4 cut(s)	22, 187, 992, 1054
BseLI	CCNNNNNNNGG	4 cut(s)	258, 370, 584, 959
BseNI	ACTGG	5 cut(s)	153, 494, 505, 605, 945
BseSI	GKGCMC	2 cut(s)	945, 966
BseX3I	CGGCCG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	485, 778
Bsh1285I	CGRYCG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	463, 497
BshNI	GGYRCC	1 cut(s)	963
BsiEI	CGRYCG	1 cut(s)	464
BsiHKAI	GWGCWC	2 cut(s)	535, 824
BsiHKCI	CYCGRG	1 cut(s)	1022
BsiSI	CCGG	4 cut(s)	252, 337, 371, 439
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	4 cut(s)	258, 370, 584, 959
BsmAI	GTCTC	2 cut(s)	892, 1100
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	463, 497
BsoBI	CYCGRG	1 cut(s)	1022
Bsp119I	TTCGAA	1 cut(s)	640
Bsp1286I	GDGCHC	4 cut(s)	535, 824, 945, 966
Bsp13I	TCCGGA	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
BspACI	CCGC	6 cut(s)	26, 164, 248, 361, 764, 928
BspANI	GGCC	2 cut(s)	463, 497
BspEI	TCCGGA	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	4 cut(s)	6, 437, 753, 965
BspPI	GGATC	6 cut(s)	324, 347, 611, 746, 759, 827
BspT104I	TTCGAA	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	963
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	5 cut(s)	153, 494, 505, 605, 945
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	1005, 1016
Bst6I	CTCTTC	1 cut(s)	461
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstAUI	TGTACA	1 cut(s)	1068
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	166, 921
BstF5I	GGATG	4 cut(s)	22, 187, 992, 1054
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	6 cut(s)	115, 319, 342, 606, 754, 835
BstMAI	GTCTC	2 cut(s)	892, 1100
BstMBI	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
BstMCI	CGRYCG	1 cut(s)	464
BstMWI	GCNNNNNNNGC	4 cut(s)	503, 512, 980, 1006
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	133, 250
BstSFI	CTRYAG	2 cut(s)	688, 1128
BstSLI	GKGCMC	2 cut(s)	945, 966
BstV1I	GCAGC	2 cut(s)	485, 778
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BstZI	CGGCCG	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	463, 497
BtsCI	GGATG	4 cut(s)	22, 187, 992, 1054
BtsIMutI	CAGTG	3 cut(s)	160, 498, 1001
Cac8I	GCNNGC	2 cut(s)	166, 921
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	4 cut(s)	418, 683, 1033, 1069
CviQI	GTAC	4 cut(s)	418, 683, 1033, 1069
DpnI	GATC	6 cut(s)	114, 318, 341, 605, 753, 834
DpnII	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
EaeI	YGGCCR	1 cut(s)	461
EagI	CGGCCG	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
EclXI	CGGCCG	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	612
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	3 cut(s)	157, 255, 771
Fnu4HI	GCNGC	2 cut(s)	474, 767
FokI	GGATG	4 cut(s)	9, 194, 979, 1041
Fsp4HI	GCNGC	2 cut(s)	474, 767
FspBI	CTAG	2 cut(s)	984, 1029
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	474, 767
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	2 cut(s)	463, 497
HapII	CCGG	4 cut(s)	252, 337, 371, 439
HhaI	GCGC	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	7 cut(s)	188, 239, 543, 621, 629, 1025, 1043
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	4 cut(s)	252, 337, 371, 439
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	5 cut(s)	181, 213, 300, 432, 548
Hpy188III	TCNNGA	5 cut(s)	110, 272, 371, 1058, 1151
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	4 cut(s)	301, 487, 782, 1072
HpyCH4III	ACNGT	2 cut(s)	1005, 1016
HpyCH4V	TGCA	4 cut(s)	292, 610, 871, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	503, 512, 980, 1006
HspAI	GCGC	1 cut(s)	168
Kpn2I	TCCGGA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
LmnI	GCTCC	2 cut(s)	4, 503
Lsp1109I	GCAGC	2 cut(s)	485, 778
MaeI	CTAG	2 cut(s)	984, 1029
MaeIII	GTNAC	2 cut(s)	43, 587
MalI	GATC	6 cut(s)	114, 318, 341, 605, 753, 834
MboI	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
MboII	GAAGA	5 cut(s)	236, 313, 316, 478, 654
MfeI	CAATTG	1 cut(s)	975
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	4 cut(s)	535, 824, 945, 966
MluCI	AATT	7 cut(s)	139, 374, 676, 693, 975, 1118, 1135
MlyI	GAGTC	3 cut(s)	197, 630, 1034
MmeI	TCCRAC	2 cut(s)	520, 651
Mph1103I	ATGCAT	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	4 cut(s)	252, 337, 371, 439
MspR9I	CCNGG	2 cut(s)	135, 252
MunI	CAATTG	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	4 cut(s)	503, 512, 980, 1006
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
NlaIV	GGNNCC	4 cut(s)	6, 437, 753, 965
NmuCI	GTSAC	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	612
NspV	TTCGAA	1 cut(s)	640
PaeR7I	CTCGAG	1 cut(s)	1022
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	239, 543, 629, 1043
PflMI	CCANNNNNTGG	1 cut(s)	959
PkrI	GCNGC	2 cut(s)	475, 768
PleI	GAGTC	3 cut(s)	196, 629, 1033
PpsI	GAGTC	3 cut(s)	196, 629, 1033
PsiI	TTATAA	2 cut(s)	699, 779
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	4 cut(s)	6, 437, 753, 965
PspPI	GGNCC	1 cut(s)	436
PspXI	VCTCGAGB	1 cut(s)	1022
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	419, 684, 1034, 1070
RsaNI	GTAC	4 cut(s)	418, 683, 1033, 1069
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	474, 767
Sau3AI	GATC	6 cut(s)	112, 316, 339, 603, 751, 832
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	3 cut(s)	197, 630, 1034
ScrFI	CCNGG	2 cut(s)	135, 252
SduI	GDGCHC	4 cut(s)	535, 824, 945, 966
SfcI	CTRYAG	2 cut(s)	688, 1128
Sfr274I	CTCGAG	1 cut(s)	1022
SfuI	TTCGAA	1 cut(s)	640
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	93, 1022
SmoI	CTYRAG	2 cut(s)	93, 1022
Sse9I	AATT	7 cut(s)	139, 374, 676, 693, 975, 1118, 1135
SsiI	CCGC	6 cut(s)	26, 164, 248, 361, 764, 928
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	2 cut(s)	984, 1029
StyD4I	CCNGG	2 cut(s)	133, 250
TaaI	ACNGT	2 cut(s)	1005, 1016
TaqI	TCGA	7 cut(s)	237, 273, 619, 640, 736, 747, 1023
TasI	AATT	7 cut(s)	139, 374, 676, 693, 975, 1118, 1135
TatI	WGTACW	1 cut(s)	1068
TfiI	GAWTC	4 cut(s)	239, 543, 629, 1043
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	160, 505, 1008
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	2 cut(s)	473, 766
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	5 cut(s)	896, 947, 951, 981, 1056
TspRI	CASTG	3 cut(s)	160, 505, 1008
Van91I	CCANNNNNTGG	1 cut(s)	959
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	139, 374, 693, 1135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XhoI	CTCGAG	1 cut(s)	1022
XspI	CTAG	2 cut(s)	984, 1029
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.