RLG00000034811
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014699
Physical Location & Seq
Forward (+)
54980967 .. 54983270
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034811

Sequence Viewer

Length: 1632 bp
ATGGAGCTTGTTCAGCAAAGTCATCCGCATCCCAAGGCTTCGGTTACCCAAGTTACTGCTTATGGCGGTAGCCCTAGTCCTATAAAGCAACTGCAACCAATTCCAAATGAAGCTGATCGCAAGGCTTTTTTGACCGGGACGCATGATGCCATTGTTGTGTCCTCCGTTGCAGCAGAGGTCGATCAGTTTTCGGACGTGGAAGAAGAGCTGAACAATTTCAATAACAATCAGAAAAGGCAGCAGGACGCTTTTCTGAACAGTTTTCCACCTGGGTATAGGTTCAATCCTCGTGATGACGAACTTGTTCGGTATTACCTGCAGAAGAAGATCATGGATGAGCCATTGCCCCCCAACAAGATCATGGAAGTTAACCTCTACCGCCACAATCCCGAGACGCTTGCTGAAAGATATGAAACTTATGGAGAAAAAGAATGGTACTTCTTTACTCCAAGGGACCGCAAGTATCGCAATGGATTTCGACCAAATAGGGCAGCTGGTGATGGATATTGGAAGGCCACAGGAGCTGACAAAACAATAAGGTCTGGCAATGTAGAGGTTGGGTGTAGAAAGGCTCTCGTTTTTTACAGAGGTAAACCTCCAAAGGGTAAAAAGACGAATTGGATCATGCATGAGTATCGAGTCCCTGATTCCCCTGATTCTCGTCCTCCCAAAAGGACTGAAAATGACATGAGGTTGGATAACTGGGTGCTGTGTAGAATTTATAAGAAAGCTGATAACAAGAACAACAAAAGCCAGAGCCGAAATCATGTAGAGGATCCTGTTGAAGAAAGTATCTCTACATCACTACCAGATAACATGGACATGGAGATGGAGACGAACGGTCAAGTTGATAACCCTCAAGCATTGGAGTCCGAAAAGGCATACCCTTACCCTATTGTTCATCCACCATTGGAGTTTGACAGGGCGTATCCTAATTATGCATTTCCTTACCCGGGTGGGCGGCCTCTATGTGCTCTAGTTAACAACAATATGAACAACATGCTTCATCACCACCGATTCCAACCAGTCTCTTTGAATTCTGGGGATAGTTATGCAAATATGGGGCAAATGCAACAGGCTTGTGGCACTTATTCACCAATGCAATTTCCTGATCAAAACTGTGGTGTGCAATTTTCTGATCAAAAGCGTGGTGTGCAATTTTCGGACCAAAGGTATATTATGCAACCAGTTGATGTCACATCAGGATCAATGGTATGTACAGATGATCAAAAGTGTGGTGTCCAATTTCCAGACGAAAAGTTTATTATGCAATCACTTGATGTCACATCAGAATCAATGGTATGTACAGATGAGGCATGTTCTGATCAGAAATGTGGTAGGCAATTTCCGGATCAAAAATTTATTGTCCAATCACCTGATGGTAGCCCACAACCAATGACATTTTCTCATGGAAAAAGTGGAAAGAGTGTCCAACCAGATGATGCAGTTGATAGTAGACCTTCACCAGTGCCTTCTTTACCTGATCAAAAGAATACTCAACAAGGAATTGGTAAGCCTCTATTACCACCATCCGATCAAGGTCTACAATACGTAGAAGAATCAAATGAAGATCATAATCTCATGTTTGGTTATCCACCATTTGCGTCTTTGGAAACTTTTTCATGGCCCTGA

Protein Analysis

544

Amino Acids

61.76

Weight (kDa)

5.5

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 89 - 214 1.8e-44 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
Acc36I ACCTGC 1 cut(s) 324
AccI GTMKAC 2 cut(s) 1456, 1543
AccIII TCCGGA 1 cut(s) 1348
AciI CCGC 5 cut(s) 26, 66, 379, 457, 961
AclWI GGATC 5 cut(s) 629, 770, 783, 1213, 1359
AcsI RAATTY 3 cut(s) 717, 1036, 1358
AfaI GTAC 3 cut(s) 437, 1219, 1306
AfiI CCNNNNNNNGG 2 cut(s) 602, 953
AgsI TTSAA 4 cut(s) 220, 283, 785, 1036
AhdI GACNNNNNGTC 1 cut(s) 840
AjiI CACGTC 1 cut(s) 196
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 1387, 1419
AluBI AGCT 6 cut(s) 7, 113, 208, 494, 524, 731
AluI AGCT 6 cut(s) 7, 113, 208, 494, 524, 731
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 3 cut(s) 386, 827, 1033
AlwI GGATC 5 cut(s) 629, 770, 783, 1213, 1359
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 2 cut(s) 389, 952
Aor13HI TCCGGA 1 cut(s) 1348
AoxI GGCC 3 cut(s) 513, 962, 1625
ApeKI GCWGC 3 cut(s) 170, 238, 491
ApoI RAATTY 3 cut(s) 717, 1036, 1358
Asp700I GAANNNNTTC 2 cut(s) 215, 303
AspS9I GGNCC 3 cut(s) 454, 1165, 1626
AsuC2I CCSGG 3 cut(s) 136, 953, 954
AsuHPI GGTGA 5 cut(s) 509, 1001, 1086, 1365, 1455
AvaI CYCGRG 2 cut(s) 389, 952
AvaII GGWCC 2 cut(s) 454, 1165
BamHI GGATCC 1 cut(s) 775
BauI CACGAG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 3 cut(s) 182, 250, 503
BccI CCATC 4 cut(s) 494, 823, 1373, 1537
BcgI CGANNNNNNTGC 4 cut(s) 380, 414, 617, 651
BciT130I CCWGG 1 cut(s) 270
BciVI GTATCC 1 cut(s) 939
BclI TGATCA 5 cut(s) 1111, 1138, 1225, 1324, 1483
BcnI CCSGG 3 cut(s) 136, 953, 954
BcoDI GTCTC 3 cut(s) 386, 827, 1033
BfaI CTAG 2 cut(s) 75, 977
BfmI CTRYAG 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 324
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 4 cut(s) 171, 239, 492, 962
BlsI GCNGC 4 cut(s) 172, 240, 493, 963
Bme1390I CCNGG 4 cut(s) 136, 270, 953, 954
Bme18I GGWCC 2 cut(s) 454, 1165
BmeRI GACNNNNNGTC 1 cut(s) 840
BmeT110I CYCGRG 2 cut(s) 389, 952
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 3 cut(s) 454, 1165, 1626
BmiI GGNNCC 2 cut(s) 455, 777
BmrFI CCNGG 4 cut(s) 136, 270, 953, 954
BmrI ACTGGG 1 cut(s) 712
BmsI GCATC 3 cut(s) 37, 136, 1432
BmuI ACTGGG 1 cut(s) 712
BpuEI CTTGAG 1 cut(s) 843
BpuMI CCSGG 3 cut(s) 136, 953, 954
BsaAI YACGTR 1 cut(s) 1552
BsaBI GATNNNNATC 1 cut(s) 1575
BsaJI CCNNGG 4 cut(s) 33, 269, 449, 952
BsaWI WCCGGW 1 cut(s) 1348
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 953
Bse1I ACTGG 4 cut(s) 707, 1025, 1187, 1466
Bse3DI GCAATG 3 cut(s) 341, 475, 553
Bse8I GATNNNNATC 1 cut(s) 1575
BseAI TCCGGA 1 cut(s) 1348
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 4 cut(s) 33, 269, 449, 952
BseGI GGATG 5 cut(s) 22, 28, 340, 901, 1529
BseJI GATNNNNATC 1 cut(s) 1575
BseLI CCNNNNNNNGG 2 cut(s) 602, 953
BseMI GCAATG 3 cut(s) 341, 475, 553
BseNI ACTGG 4 cut(s) 707, 1025, 1187, 1466
BseXI GCAGC 3 cut(s) 182, 250, 503
BshFI GGCC 3 cut(s) 515, 964, 1627
BsiHKAI GWGCWC 1 cut(s) 976
BsiHKCI CYCGRG 2 cut(s) 389, 952
BsiSI CCGG 3 cut(s) 135, 953, 1349
BslFI GGGAC 3 cut(s) 151, 467, 626
BslI CCNNNNNNNGG 2 cut(s) 602, 953
BsmAI GTCTC 3 cut(s) 386, 827, 1033
BsmBI CGTCTC 2 cut(s) 386, 827
BsmFI GGGAC 3 cut(s) 151, 467, 626
BsnI GGCC 3 cut(s) 515, 964, 1627
BsoBI CYCGRG 2 cut(s) 389, 952
Bsp1286I GDGCHC 1 cut(s) 976
Bsp13I TCCGGA 1 cut(s) 1348
Bsp1407I TGTACA 2 cut(s) 1217, 1304
BspACI CCGC 5 cut(s) 26, 66, 379, 457, 961
BspANI GGCC 3 cut(s) 515, 964, 1627
BspEI TCCGGA 1 cut(s) 1348
BspLI GGNNCC 2 cut(s) 455, 777
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 5 cut(s) 629, 770, 783, 1213, 1359
BspQI GCTCTTC 1 cut(s) 198
BsrDI GCAATG 3 cut(s) 341, 475, 553
BsrGI TGTACA 2 cut(s) 1217, 1304
BsrI ACTGG 4 cut(s) 707, 1025, 1187, 1466
BssECI CCNNGG 4 cut(s) 33, 269, 449, 952
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 33, 449
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 260, 842, 1121
Bst6I CTCTTC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 1217, 1304
BstBAI YACGTR 1 cut(s) 1552
BstC8I GCNNGC 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 5 cut(s) 22, 28, 340, 901, 1529
BstMAI GTCTC 3 cut(s) 386, 827, 1033
BstMWI GCNNNNNNNGC 4 cut(s) 13, 465, 521, 1153
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 2 cut(s) 1003, 1320
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 4 cut(s) 134, 268, 951, 952
BstSFI CTRYAG 1 cut(s) 317
BstSNI TACGTA 1 cut(s) 1552
BstV1I GCAGC 3 cut(s) 182, 250, 503
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 3 cut(s) 515, 964, 1627
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 5 cut(s) 22, 28, 340, 901, 1529
BtsIMutI CAGTG 1 cut(s) 1473
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 3 cut(s) 454, 1165, 1626
Cfr9I CCCGGG 1 cut(s) 952
CseI GACGC 4 cut(s) 148, 254, 403, 1593
Csp6I GTAC 3 cut(s) 436, 1218, 1305
CviQI GTAC 3 cut(s) 436, 1218, 1305
DriI GACNNNNNGTC 1 cut(s) 840
Eam1104I CTCTTC 1 cut(s) 198
Eam1105I GACNNNNNGTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 198
Eco105I TACGTA 1 cut(s) 1552
Eco130I CCWWGG 2 cut(s) 33, 449
Eco47I GGWCC 2 cut(s) 454, 1165
Eco88I CYCGRG 2 cut(s) 389, 952
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 1036
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 33, 449
EcoT22I ATGCAT 2 cut(s) 630, 943
ErhI CCWWGG 2 cut(s) 33, 449
Esp3I CGTCTC 2 cut(s) 386, 827
FaqI GGGAC 3 cut(s) 151, 467, 626
FbaI TGATCA 5 cut(s) 1111, 1138, 1225, 1324, 1483
FblI GTMKAC 2 cut(s) 1456, 1543
Fnu4HI GCNGC 4 cut(s) 171, 239, 492, 962
FokI GGATG 5 cut(s) 9, 15, 347, 888, 1516
Fsp4HI GCNGC 4 cut(s) 171, 239, 492, 962
FspBI CTAG 2 cut(s) 75, 977
GluI GCNGC 4 cut(s) 171, 239, 492, 962
HaeIII GGCC 3 cut(s) 515, 964, 1627
HapII CCGG 3 cut(s) 135, 953, 1349
HgaI GACGC 4 cut(s) 148, 254, 403, 1593
HincII GTYRAC 2 cut(s) 370, 982
HindII GTYRAC 2 cut(s) 370, 982
HinfI GANTC 7 cut(s) 639, 647, 656, 869, 1017, 1292, 1559
HpaI GTTAAC 2 cut(s) 370, 982
HpaII CCGG 3 cut(s) 135, 953, 1349
HphI GGTGA 5 cut(s) 509, 1001, 1086, 1365, 1455
Hpy166II GTNNAC 5 cut(s) 370, 593, 982, 1457, 1544
Hpy188III TCNNGA 6 cut(s) 290, 389, 1109, 1203, 1250, 1349
Hpy8I GTNNAC 5 cut(s) 370, 593, 982, 1457, 1544
HpyAV CCTTC 3 cut(s) 505, 1470, 1482
HpyCH4III ACNGT 3 cut(s) 260, 842, 1121
HpyCH4IV ACGT 2 cut(s) 195, 1551
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 465, 521, 1153
HpySE526I ACGT 2 cut(s) 195, 1551
Kpn2I TCCGGA 1 cut(s) 1348
Ksp22I TGATCA 5 cut(s) 1111, 1138, 1225, 1324, 1483
KspAI GTTAAC 2 cut(s) 370, 982
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 4, 521
Lsp1109I GCAGC 3 cut(s) 182, 250, 503
LweI GCATC 3 cut(s) 37, 136, 1432
MaeI CTAG 2 cut(s) 75, 977
MaeII ACGT 2 cut(s) 195, 1551
MaeIII GTNAC 4 cut(s) 43, 52, 1195, 1282
MboII GAAGA 7 cut(s) 212, 215, 334, 337, 797, 1568, 1580
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 976
MlyI GAGTC 2 cut(s) 648, 878
MmeI TCCRAC 3 cut(s) 675, 1045, 1456
Mph1103I ATGCAT 2 cut(s) 630, 943
MroI TCCGGA 1 cut(s) 1348
MroXI GAANNNNTTC 2 cut(s) 215, 303
MseI TTAA 2 cut(s) 369, 981
MslI CAYNNNNRTG 3 cut(s) 155, 821, 827
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 3 cut(s) 135, 953, 1349
MspR9I CCNGG 4 cut(s) 136, 270, 953, 954
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 4 cut(s) 13, 465, 521, 1153
NciI CCSGG 3 cut(s) 136, 953, 954
NlaIV GGNNCC 2 cut(s) 455, 777
NmuCI GTSAC 2 cut(s) 1195, 1282
NsiI ATGCAT 2 cut(s) 630, 943
NspI RCATGY 2 cut(s) 1003, 1320
PciSI GCTCTTC 1 cut(s) 198
PdmI GAANNNNTTC 2 cut(s) 215, 303
PfeI GAWTC 5 cut(s) 647, 656, 1017, 1292, 1559
PkrI GCNGC 4 cut(s) 172, 240, 493, 963
PleI GAGTC 2 cut(s) 647, 877
PpsI GAGTC 2 cut(s) 647, 877
Ppu21I YACGTR 1 cut(s) 1552
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 455, 777
PspPI GGNCC 3 cut(s) 454, 1165, 1626
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 3 cut(s) 437, 1219, 1306
RsaNI GTAC 3 cut(s) 436, 1218, 1305
RseI CAYNNNNRTG 3 cut(s) 155, 821, 827
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 369, 981
SatI GCNGC 4 cut(s) 171, 239, 492, 962
Sau96I GGNCC 3 cut(s) 454, 1165, 1626
SchI GAGTC 2 cut(s) 648, 878
ScrFI CCNGG 4 cut(s) 136, 270, 953, 954
SduI GDGCHC 1 cut(s) 976
SfaNI GCATC 3 cut(s) 37, 136, 1432
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 2 cut(s) 454, 1165
SmaI CCCGGG 1 cut(s) 954
SmiMI CAYNNNNRTG 3 cut(s) 155, 821, 827
SmlI CTYRAG 1 cut(s) 858
SmoI CTYRAG 1 cut(s) 858
SnaBI TACGTA 1 cut(s) 1552
SsiI CCGC 5 cut(s) 26, 66, 379, 457, 961
SspMI CTAG 2 cut(s) 75, 977
StyD4I CCNGG 4 cut(s) 134, 268, 951, 952
StyI CCWWGG 2 cut(s) 33, 449
TaaI ACNGT 3 cut(s) 260, 842, 1121
TaiI ACGT 2 cut(s) 198, 1554
TaqI TCGA 3 cut(s) 180, 478, 637
TatI WGTACW 2 cut(s) 1217, 1304
TauI GCSGC 1 cut(s) 964
TfiI GAWTC 5 cut(s) 647, 656, 1017, 1292, 1559
Tru1I TTAA 2 cut(s) 369, 981
Tru9I TTAA 2 cut(s) 369, 981
TscAI CASTG 1 cut(s) 1473
TseFI GTSAC 2 cut(s) 1195, 1282
TseI GCWGC 3 cut(s) 170, 238, 491
Tsp45I GTSAC 2 cut(s) 1195, 1282
TspDTI ATGAA 7 cut(s) 123, 426, 890, 995, 1007, 1581, 1611
TspGWI ACGGA 1 cut(s) 154
TspMI CCCGGG 1 cut(s) 952
TspRI CASTG 1 cut(s) 1473
VpaK11BI GGWCC 2 cut(s) 454, 1165
XapI RAATTY 3 cut(s) 717, 1036, 1358
XceI RCATGY 2 cut(s) 1003, 1320
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 1376
XmaI CCCGGG 1 cut(s) 952
XmiI GTMKAC 2 cut(s) 1456, 1543
XmnI GAANNNNTTC 2 cut(s) 215, 303
XspI CTAG 2 cut(s) 75, 977
Zsp2I ATGCAT 2 cut(s) 630, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.