FvH4_5g29590

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012248
Physical Location & Seq
Reverse (-)
20534710 .. 20537370
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29590.t1

Sequence Viewer

Length: 243 bp
ATGCATCCTCCATTAACATTACACAAGCACCCCATGTGTGCCCAAATCATTGAGGAGTTTCAAAAATGTCACTTAGATCATCCTTTTGCAAAATTTATTGGTGAATGTACAGATCTCAAGATAAAGCTTGATCGCTGTTTTCGGGAGGAAAAAGCATTGAAGAGAAAAGCCAACTTTGAACAGAGTAAGAAACTGAGGGATAAGCTACAAGCTTCAAGGAAGGAATCTGCAATCTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

81

Amino Acids

9.45

Weight (kDa)

9.18

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 1 - 69 1.5e-13 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 4 cut(s) 62, 160, 179, 216
AluBI AGCT 3 cut(s) 127, 205, 212
AluI AGCT 3 cut(s) 127, 205, 212
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 43
BglII AGATCT 1 cut(s) 112
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 101
BseGI GGATG 2 cut(s) 4, 79
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 3 cut(s) 76, 112, 130
BspCNI CTCAG 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 107
BssMI GATC 3 cut(s) 76, 112, 130
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 73, 194
BstF5I GGATG 2 cut(s) 4, 79
BstKTI GATC 3 cut(s) 79, 115, 133
BstMBI GATC 3 cut(s) 76, 112, 130
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 2 cut(s) 4, 79
Csp6I GTAC 1 cut(s) 108
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 127, 170, 205, 212
CviKI_1 RGCY 4 cut(s) 127, 170, 205, 212
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 73, 194
DpnI GATC 3 cut(s) 78, 114, 132
DpnII GATC 3 cut(s) 76, 112, 130
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 37
FaiI YATR 1 cut(s) 35
FatI CATG 1 cut(s) 33
FokI GGATG 1 cut(s) 66
Hin1II CATG 1 cut(s) 37
HindIII AAGCTT 2 cut(s) 125, 210
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 118, 143
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 4, 89, 230
HpyF3I CTNAG 2 cut(s) 73, 194
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 3 cut(s) 76, 112, 130
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 68
MalI GATC 3 cut(s) 78, 114, 132
MboI GATC 3 cut(s) 76, 112, 130
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 92
MnlI CCTC 4 cut(s) 18, 46, 139, 189
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 14
NdeII GATC 3 cut(s) 76, 112, 130
NlaIII CATG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 3 cut(s) 76, 112, 130
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 129, 207, 214
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 7 cut(s) 37, 46, 130, 140, 155, 221, 228
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 92
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 68
XapI RAATTY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.