MD17G1268300.v1.1

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012248
Physical Location & Seq
Forward (+)
32813126 .. 32815157
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1268300.v1.1.491

Sequence Viewer

Length: 264 bp
ATGCATCCTCCATTAACGTTACACAAGCACCCCATGTGTGCTCAAATCATCGAGGAGTTTCAGAAGTGTCATGTCGATCATCCTATTGCAAAATTCTTCGGTGAATGTACAGATCTCAAAATACAGCTTGACCGTTGTTTCCGACAGGAAAAAGCTGTGAAGAGGAAGGCAAACTTTGAACAGAGTAAAAAACTCCGGGAAAGGCTACAAACTTTGAGGAAGGAAACTGCCGAGATAAGCACTGAGAGTTCCGTGCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

88

Amino Acids

10.23

Weight (kDa)

9.02

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 1 - 70 1.5e-15 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 17
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 127, 155, 260
AluI AGCT 3 cut(s) 127, 155, 260
Alw21I GWGCWC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 43
BcnI CCSGG 1 cut(s) 197
BglII AGATCT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 4, 79
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 2 cut(s) 76, 112
BspCNI CTCAG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 107
BssMI GATC 2 cut(s) 76, 112
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 4, 79
BstKTI GATC 2 cut(s) 79, 115
BstMBI GATC 2 cut(s) 76, 112
BstSCI CCNGG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 2 cut(s) 4, 79
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 34, 71
CviJI RGCY 4 cut(s) 127, 155, 205, 260
CviKI_1 RGCY 4 cut(s) 127, 155, 205, 260
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 78, 114
DpnII GATC 2 cut(s) 76, 112
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 37, 74
FaiI YATR 2 cut(s) 35, 72
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 33, 70
FokI GGATG 1 cut(s) 66
HapII CCGG 1 cut(s) 196
Hin1II CATG 2 cut(s) 37, 74
HindIII AAGCTT 1 cut(s) 258
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 63, 143
HpyAV CCTTC 2 cut(s) 160, 214
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 4, 89, 256
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 2 cut(s) 37, 74
Kzo9I GATC 2 cut(s) 76, 112
LpnPI CCDG 2 cut(s) 131, 209
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 18
MalI GATC 2 cut(s) 78, 114
MboI GATC 2 cut(s) 76, 112
MboII GAAGA 2 cut(s) 88, 172
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 18, 46, 156, 210
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 14, 262
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 197
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 76, 112
NlaIII CATG 2 cut(s) 37, 74
NmeAIII GCCGAG 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 17
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 14, 262
Sau3AI GATC 2 cut(s) 76, 112
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 20, 129, 157, 262
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 9 cut(s) 37, 46, 64, 83, 140, 158, 208, 209, 244
Sse9I AATT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 51, 75
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 2 cut(s) 14, 262
Tru9I TTAA 2 cut(s) 14, 262
TscAI CASTG 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 247
XapI RAATTY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.