MD09G1270200.v1.1

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012248
Physical Location & Seq
Forward (+)
34462668 .. 34464465
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1270200.v1.1.491

Sequence Viewer

Length: 264 bp
ATGCATCCTCCATTGACGCTACACAAGCACCCCATGTGTGCACAAATCATCGAGGAGTTTCAGAAGTGTCATGTAGATCATCCTATTGCAAAATTCTTTGGTGAATGTACAGACCTCAAAATACAGCTCGACCGTTGTTTCCGACAGGAAAAAGCTGTGAAGAGGAAGGCAAACTTTGAAGAGAGTAAAAAACTCAAGGAAAGGCTACAAACTTTGAGGAAGGAAACTGCTGAGATAACCACTGAGAGTTCTGTACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

88

Amino Acids

10.22

Weight (kDa)

8.75

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 1 - 70 2.2e-15 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 2 cut(s) 109, 255
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 3 cut(s) 127, 155, 260
AluI AGCT 3 cut(s) 127, 155, 260
Alw21I GWGCWC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 179
BseGI GGATG 2 cut(s) 4, 79
BseMII CTCAG 2 cut(s) 222, 234
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 133
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 2 cut(s) 107, 253
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 223, 235
BsrGI TGTACA 2 cut(s) 107, 253
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 155, 174
BstAUI TGTACA 2 cut(s) 107, 253
BstDEI CTNAG 2 cut(s) 231, 243
BstF5I GGATG 2 cut(s) 4, 79
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 4, 79
BtsIMutI CAGTG 1 cut(s) 240
CseI GACGC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 108, 254
CviAII CATG 2 cut(s) 34, 71
CviJI RGCY 4 cut(s) 127, 155, 205, 260
CviKI_1 RGCY 4 cut(s) 127, 155, 205, 260
CviQI GTAC 2 cut(s) 108, 254
DdeI CTNAG 2 cut(s) 231, 243
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 155, 174
EarI CTCTTC 2 cut(s) 155, 174
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 37, 74
FaiI YATR 2 cut(s) 35, 72
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 33, 70
FokI GGATG 1 cut(s) 66
HgaI GACGC 1 cut(s) 25
Hin1II CATG 2 cut(s) 37, 74
HindIII AAGCTT 1 cut(s) 258
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 63, 143
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 160, 214
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 4, 41, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 231, 243
Hsp92II CATG 2 cut(s) 37, 74
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 131
LweI GCATC 1 cut(s) 13
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 172, 191
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 5 cut(s) 18, 46, 125, 156, 210
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 37, 74
NsiI ATGCAT 1 cut(s) 6
RsaI GTAC 2 cut(s) 109, 255
RsaNI GTAC 2 cut(s) 108, 254
SaqAI TTAA 1 cut(s) 262
Sau3AI GATC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 117, 129, 157, 262
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 7 cut(s) 37, 46, 64, 83, 140, 158, 208
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 92
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 51, 129
TasI AATT 1 cut(s) 92
TatI WGTACW 2 cut(s) 107, 253
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 1 cut(s) 247
TspRI CASTG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.