Rroxscaffold_3G00236640

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012248
Physical Location & Seq
Forward (+)
23997946 .. 24000031
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236640.1

Sequence Viewer

Length: 249 bp
ATGCATCCTCCATTAACGTTACACAAGCACCCTATGTGTGCACAAATCATTGAGGAGTTTCAGAAATGTCATTTAGATCATCCTTTTGCAAAATTCATTGGTGAATGTACAGATCTCAAAATAAAGCTTGATCGCTGTTTTCGGCAGGAAAAAGCGTTGAAGAGGAAAGCCAACTTTGAACAGAGTAAAAAATTGAGGGACAGGCTACAAGCTTCAAGGAAGGAAACTGCTGAGGCAATCACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

82

Amino Acids

9.7

Weight (kDa)

9.21

Isoelectric Point (pI)

61.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 1 - 69 7.7e-14 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 17
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 3 cut(s) 160, 179, 216
AluBI AGCT 2 cut(s) 127, 212
AluI AGCT 2 cut(s) 127, 212
Alw21I GWGCWC 1 cut(s) 43
Alw44I GTGCAC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 231
BglII AGATCT 1 cut(s) 112
BmsI GCATC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 231
BseGI GGATG 2 cut(s) 4, 79
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 43
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 3 cut(s) 76, 112, 130
BspCNI CTCAG 1 cut(s) 223
BsrGI TGTACA 1 cut(s) 107
BssMI GATC 3 cut(s) 76, 112, 130
Bst6I CTCTTC 1 cut(s) 155
BstAUI TGTACA 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 4, 79
BstKTI GATC 3 cut(s) 79, 115, 133
BstMBI GATC 3 cut(s) 76, 112, 130
BstSLI GKGCMC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 2 cut(s) 4, 79
BtsIMutI CAGTG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 4 cut(s) 127, 170, 205, 212
CviKI_1 RGCY 4 cut(s) 127, 170, 205, 212
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 78, 114, 132
DpnII GATC 3 cut(s) 76, 112, 130
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 212
FokI GGATG 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 125, 210
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 4, 41, 89
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 17
Kzo9I GATC 3 cut(s) 76, 112, 130
LpnPI CCDG 2 cut(s) 131, 187
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 18
MalI GATC 3 cut(s) 78, 114, 132
MboI GATC 3 cut(s) 76, 112, 130
MboII GAAGA 1 cut(s) 172
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 92, 191
MnlI CCTC 5 cut(s) 18, 46, 156, 189, 226
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 14
NdeII GATC 3 cut(s) 76, 112, 130
NsiI ATGCAT 1 cut(s) 6
Psp1406I AACGTT 1 cut(s) 17
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 3 cut(s) 76, 112, 130
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 20, 129, 214
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 6 cut(s) 37, 140, 158, 214, 221, 228
Sse9I AATT 2 cut(s) 92, 191
TaiI ACGT 1 cut(s) 20
TasI AATT 2 cut(s) 92, 191
TatI WGTACW 1 cut(s) 107
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 1 cut(s) 247
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.