Rorug07G0211000

COX assembly mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012248
Physical Location & Seq
Reverse (-)
18625595 .. 18626086
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0211000.1

Sequence Viewer

Length: 492 bp
ATGGCAGCTCCTCCAAAACTTCTTCTTGGTCCTCCAGGACCCAAACCATCAGACTCCACCACAACGAAACCTCCGTTGGGACGCACCGAGAACAACTCCGCCACCTACCTCTCCTCCGGCAATCCCTGCCTCGACCTCTTCTTCCACATCGTACCCGACACCCCGTCCTCTTACATCAACGAACAACTTCCCAAGTCCTGGGCCCACAACGCCCTAACCACCCTCAAGCTAATCTGCAACCTCCGCGGCGTCCGCGGCACCGGAAAGTCCGACAAAGAAGCCTTCTTCACGGCAGCATTCTGGCTCCACAGACACCACCCCAAAACCCTAGCCTGCAATCTCGCCTCTTTCGCCCAATTCGGGTGCTTCAAAGACCTCCCCGAGATTCTCTACCGCCTTCTAGAAGGCCAAGACATAAGGAAGAACCGCAAGGCCGAGTGGTCCATGAAAAAGATGTTGTGCGGAAGCGTAACAAACAAGGTATTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cmc1

Protein Analysis

163

Amino Acids

18.1

Weight (kDa)

9.51

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 29 - 145 8.6e-45 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 198
AccII CGCG 2 cut(s) 246, 255
AciI CCGC 8 cut(s) 99, 244, 246, 253, 255, 394, 427, 462
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 77, 198, 360
AgsI TTSAA 1 cut(s) 370
AhdI GACNNNNNGTC 1 cut(s) 163
AjnI CCWGG 2 cut(s) 34, 197
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 8, 229
AluI AGCT 2 cut(s) 8, 229
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 201, 406, 432
ApaI GGGCCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 5, 293
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 5 cut(s) 29, 38, 201, 202, 441
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 3 cut(s) 29, 38, 441
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 17, 305
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 2 cut(s) 36, 199
BfaI CTAG 2 cut(s) 329, 401
BisI GCNGC 4 cut(s) 6, 247, 256, 294
BlsI GCNGC 4 cut(s) 7, 248, 257, 295
Bme1390I CCNGG 2 cut(s) 36, 199
Bme18I GGWCC 3 cut(s) 29, 38, 441
BmeRI GACNNNNNGTC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 5 cut(s) 29, 38, 201, 202, 441
BmiI GGNNCC 4 cut(s) 40, 203, 259, 305
BmrFI CCNGG 2 cut(s) 36, 199
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 198, 244, 253
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 198, 360
BseBI CCWGG 2 cut(s) 36, 199
BseDI CCNNGG 3 cut(s) 198, 244, 253
BseLI CCNNNNNNNGG 3 cut(s) 77, 198, 360
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 17, 305
Bsh1236I CGCG 2 cut(s) 246, 255
BshFI GGCC 3 cut(s) 203, 408, 434
BshNI GGYRCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 117, 261
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 3 cut(s) 77, 198, 360
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 3 cut(s) 203, 408, 434
BsoBI CYCGRG 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 205
BspACI CCGC 8 cut(s) 99, 244, 246, 253, 255, 394, 427, 462
BspANI GGCC 3 cut(s) 203, 408, 434
BspFNI CGCG 2 cut(s) 246, 255
BspLI GGNNCC 4 cut(s) 40, 203, 259, 305
BspT107I GGYRCC 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 198, 244, 253
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 2 cut(s) 36, 199
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 334
BstDSI CCRYGG 2 cut(s) 244, 253
BstFNI CGCG 2 cut(s) 246, 255
BstMWI GCNNNNNNNGC 6 cut(s) 126, 209, 243, 252, 255, 350
BstNI CCWGG 2 cut(s) 36, 199
BstSCI CCNGG 2 cut(s) 34, 197
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 246, 255
BstV1I GCAGC 2 cut(s) 17, 305
BsuRI GGCC 3 cut(s) 203, 408, 434
BtgI CCRYGG 2 cut(s) 244, 253
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 5 cut(s) 29, 38, 201, 202, 441
Cfr42I CCGCGG 2 cut(s) 247, 256
CseI GACGC 2 cut(s) 90, 238
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 445
CviJI RGCY 8 cut(s) 8, 203, 229, 281, 304, 332, 408, 434
CviKI_1 RGCY 8 cut(s) 8, 203, 229, 281, 304, 332, 408, 434
CviQI GTAC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 3 cut(s) 29, 38, 441
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 2 cut(s) 34, 197
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 1 cut(s) 448
FaiI YATR 3 cut(s) 416, 446, 490
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 444
Fnu4HI GCNGC 4 cut(s) 6, 247, 256, 294
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 6, 247, 256, 294
FspBI CTAG 2 cut(s) 329, 401
GluI GCNGC 4 cut(s) 6, 247, 256, 294
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 3 cut(s) 203, 408, 434
HapII CCGG 2 cut(s) 117, 261
HgaI GACGC 2 cut(s) 90, 238
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 448
HinfI GANTC 2 cut(s) 53, 385
HpaII CCGG 2 cut(s) 117, 261
Hpy188I TCNGA 2 cut(s) 52, 271
Hpy188III TCNNGA 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 292, 398, 407
HpyCH4V TGCA 2 cut(s) 237, 336
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 209, 243, 252, 255, 350
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 448
KspI CCGCGG 2 cut(s) 247, 256
LmnI GCTCC 2 cut(s) 13, 309
LpnPI CCDG 9 cut(s) 21, 48, 130, 139, 184, 211, 274, 286, 346
Lsp1109I GCAGC 2 cut(s) 17, 305
MaeI CTAG 2 cut(s) 329, 401
MaeIII GTNAC 1 cut(s) 469
MboII GAAGA 5 cut(s) 14, 130, 133, 277, 433
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 356
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 246, 255
MspI CCGG 2 cut(s) 117, 261
MspR9I CCNGG 2 cut(s) 36, 199
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 2 cut(s) 36, 199
MvnI CGCG 2 cut(s) 246, 255
MwoI GCNNNNNNNGC 6 cut(s) 126, 209, 243, 252, 255, 350
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 4 cut(s) 40, 203, 259, 305
NmeAIII GCCGAG 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 198
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 4 cut(s) 7, 248, 257, 295
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 34, 197
PspGI CCWGG 2 cut(s) 34, 197
PspN4I GGNNCC 4 cut(s) 40, 203, 259, 305
PspOMI GGGCCC 1 cut(s) 201
PspPI GGNCC 5 cut(s) 29, 38, 201, 202, 441
PspPPI RGGWCCY 1 cut(s) 38
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacII CCGCGG 2 cut(s) 247, 256
SatI GCNGC 4 cut(s) 6, 247, 256, 294
Sau96I GGNCC 5 cut(s) 29, 38, 201, 202, 441
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 36, 199
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 10, 73, 107, 111, 138, 231, 243, 378, 483
Sfr303I CCGCGG 2 cut(s) 247, 256
SgrBI CCGCGG 2 cut(s) 247, 256
SinI GGWCC 3 cut(s) 29, 38, 441
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 356
SsiI CCGC 8 cut(s) 99, 244, 246, 253, 255, 394, 427, 462
SspMI CTAG 2 cut(s) 329, 401
StyD4I CCNGG 2 cut(s) 34, 197
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 356
TauI GCSGC 2 cut(s) 249, 258
TfiI GAWTC 1 cut(s) 385
TseI GCWGC 2 cut(s) 5, 293
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 3 cut(s) 29, 38, 441
XbaI TCTAGA 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 329, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.