Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012248

Physical Location & Seq

Genomic Coordinates Forward (+)

18638162 .. 18640866

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0211100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAGAAGAAAATTCATTGCACGAGAGATAAGGTGCAGCGGCTATGGAGTCAGGATTTTAGTAAAGACATTGGTTGAAGATGATTTCATTGATAGATACAAAGAACATTTTATACAAGAGAGGTCTAAACGTGCTAGACTCTTACTGCTACTGCTACAATCTAGGAATTCTAATGAGAGGCTAGAACGGGAATGGCAAATCGAGCCGGAACAGTTCGGTGTTGAATTGCTATCGTGGACCAGTGTGAATGACATAACCAAGGATGGTGGAATAATTAAGAAGCCCCTGCCTGTGCTTTATGCAGTTAAATTTGAGGCCCATCTCGAAGATAAAACACTTGTAGCAAAATCTGACCCCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAACGCTGTGAAAACAATGAAGAATGCCGAAAAAGTATTGCTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCCTCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAACTGACAGATGACCAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGGATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGAAAGGAATTTTTAAAGAAAGGTCATGCTGGAGGAGAAGAACCATTTGAGTTCAAGATAGATGAGGAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGGTGAGATAGCTGTTGTGATTATAGCCCCTGAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTGGTGCCTCCTAATTCGATCCTCTATTATGAGATCGAGCTTGTATCTTTTGTCAAGGACAAGGAATCATGGGACATGAATACTCTGAATAAAATGGAGGCTGCTGTGAAGGAAGGTCCAGTCCCATCTGCTGATACAGACAACCCATCTGCTCAAGTCTGGAGGACTCCTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cmc1

Protein Analysis

348

Amino Acids

39.09

Weight (kDa)

5.32

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	102 - 183	1.1e-13	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	207 - 304	1e-23	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21192 AT4G21192
fragaria_vesca	FvH4_5g29590
malus_domestica	MD09G1270200.v1.1 MD17G1268300.v1.1
prunus_persica	Prupe.1G582900_v2.0.a1 Prupe.1G582900_v2.0.a1 Prupe.1G582900_v2.0.a1
pyrus_communis	pycom17g26690
rosa_chinensis	RchiOBHm_Chr7g0222581
rosa_multiflora	Rmu_sc0016182.1_g000006
rosa_roxburghii	Rroxscaffold_3G00236640
rosa_rugosa	Rorug07G0211000 Rorug07G0211100
rosa_samantha	Rh7AG354200 Rh7AG354600 Rh7CG371700
rosa_wichuraiana	Rw7G029790 Rw7G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	871
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	595, 880
AcsI	RAATTY	5 cut(s)	11, 166, 308, 362, 689
AfiI	CCNNNNNNNGG	4 cut(s)	461, 491, 638, 830
AgsI	TTSAA	3 cut(s)	77, 224, 736
AjnI	CCWGG	1 cut(s)	1036
AluBI	AGCT	4 cut(s)	644, 776, 806, 907
AluI	AGCT	4 cut(s)	644, 776, 806, 907
Alw26I	GTCTC	1 cut(s)	568
AlwI	GGATC	2 cut(s)	595, 880
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	36, 968
ApoI	RAATTY	5 cut(s)	11, 166, 308, 362, 689
AspS9I	GGNCC	3 cut(s)	237, 316, 983
AsuHPI	GGTGA	3 cut(s)	460, 506, 809
AvaII	GGWCC	2 cut(s)	237, 983
BanI	GGYRCC	1 cut(s)	871
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	48, 955
BccI	CCATC	5 cut(s)	257, 327, 674, 1000, 1021
BciT130I	CCWGG	1 cut(s)	1038
BcoDI	GTCTC	1 cut(s)	568
BfaI	CTAG	4 cut(s)	135, 162, 182, 539
BfmI	CTRYAG	1 cut(s)	777
BisI	GCNGC	3 cut(s)	37, 40, 969
BlsI	GCNGC	3 cut(s)	38, 41, 970
Bme1390I	CCNGG	1 cut(s)	1038
Bme18I	GGWCC	2 cut(s)	237, 983
BmgT120I	GGNCC	3 cut(s)	237, 316, 983
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	1 cut(s)	1038
BpmI	CTGGAG	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	258, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	4 cut(s)	461, 491, 638, 830
Bse1I	ACTGG	2 cut(s)	240, 986
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	258, 357
BseGI	GGATG	2 cut(s)	268, 628
BseLI	CCNNNNNNNGG	4 cut(s)	461, 491, 638, 830
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	579, 816
BseNI	ACTGG	2 cut(s)	240, 986
BseRI	GAGGAG	2 cut(s)	729, 761
BseXI	GCAGC	2 cut(s)	48, 955
BseYI	CCCAGC	1 cut(s)	852
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	317
BshNI	GGYRCC	1 cut(s)	871
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	4 cut(s)	485, 835, 953, 974
BslI	CCNNNNNNNGG	4 cut(s)	461, 491, 638, 830
BsmAI	GTCTC	1 cut(s)	568
BsmFI	GGGAC	4 cut(s)	485, 835, 953, 974
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	600, 885, 900
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	2 cut(s)	578, 817
BspLI	GGNNCC	1 cut(s)	873
BspPI	GGATC	2 cut(s)	595, 880
BspT107I	GGYRCC	1 cut(s)	871
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	240, 986
BssECI	CCNNGG	2 cut(s)	258, 357
BssMI	GATC	3 cut(s)	600, 885, 900
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	5 cut(s)	213, 370, 448, 562, 655
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	565, 825
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	268, 628
BstKTI	GATC	3 cut(s)	603, 888, 903
BstMAI	GTCTC	1 cut(s)	568
BstMBI	GATC	3 cut(s)	600, 885, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	1038
BstSCI	CCNGG	1 cut(s)	1036
BstSFI	CTRYAG	1 cut(s)	777
BstV1I	GCAGC	2 cut(s)	48, 955
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	268, 628
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	4 cut(s)	247, 366, 660, 873
Cac8I	GCNNGC	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	237, 316, 983
CseI	GACGC	1 cut(s)	617
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	3 cut(s)	707, 936, 943
DdeI	CTNAG	2 cut(s)	565, 825
DpnI	GATC	3 cut(s)	602, 887, 902
DpnII	GATC	3 cut(s)	600, 885, 900
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	237, 983
EcoRI	GAATTC	2 cut(s)	166, 362
EcoRII	CCWGG	1 cut(s)	1036
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	710, 939, 946
FaqI	GGGAC	4 cut(s)	485, 835, 953, 974
FatI	CATG	3 cut(s)	706, 935, 942
Fnu4HI	GCNGC	3 cut(s)	37, 40, 969
FokI	GGATG	2 cut(s)	275, 635
Fsp4HI	GCNGC	3 cut(s)	37, 40, 969
FspBI	CTAG	4 cut(s)	135, 162, 182, 539
GluI	GCNGC	3 cut(s)	37, 40, 969
GsaI	CCCAGC	1 cut(s)	856
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	3 cut(s)	710, 939, 946
HinfI	GANTC	5 cut(s)	48, 138, 848, 932, 1033
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	3 cut(s)	460, 506, 809
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	4 cut(s)	352, 568, 847, 954
Hpy188III	TCNNGA	5 cut(s)	52, 323, 539, 736, 1027
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	6 cut(s)	605, 611, 632, 787, 970, 974
HpyCH4III	ACNGT	5 cut(s)	213, 370, 448, 562, 655
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	20, 36, 302, 395, 521, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	565, 825
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	710, 939, 946
Kzo9I	GATC	3 cut(s)	600, 885, 900
LmnI	GCTCC	2 cut(s)	641, 748
Lsp1109I	GCAGC	2 cut(s)	48, 955
MaeI	CTAG	4 cut(s)	135, 162, 182, 539
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	3 cut(s)	380, 649, 781
MalI	GATC	3 cut(s)	602, 887, 902
MboI	GATC	3 cut(s)	600, 885, 900
MboII	GAAGA	8 cut(s)	18, 89, 338, 433, 518, 610, 731, 802
MflI	RGATCY	1 cut(s)	600
MluCI	AATT	9 cut(s)	11, 166, 224, 273, 308, 362, 659, 689, 880
MlyI	GAGTC	4 cut(s)	57, 132, 857, 1027
MseI	TTAA	4 cut(s)	276, 306, 594, 695
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	1038
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	3 cut(s)	600, 885, 900
NlaIII	CATG	3 cut(s)	710, 939, 946
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	781
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	932
PflMI	CCANNNNNTGG	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	3 cut(s)	38, 41, 970
PleI	GAGTC	4 cut(s)	56, 132, 856, 1027
PpsI	GAGTC	4 cut(s)	56, 132, 856, 1027
Psp6I	CCWGG	1 cut(s)	1036
PspFI	CCCAGC	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	3 cut(s)	237, 316, 983
PsrI	GAACNNNNNNTAC	2 cut(s)	96, 128
PsuI	RGATCY	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	276, 306, 594, 695
SatI	GCNGC	3 cut(s)	37, 40, 969
Sau3AI	GATC	3 cut(s)	600, 885, 900
Sau96I	GGNCC	3 cut(s)	237, 316, 983
SchI	GAGTC	4 cut(s)	57, 132, 857, 1027
ScrFI	CCNGG	1 cut(s)	1038
SetI	ASST	9 cut(s)	35, 125, 133, 646, 706, 778, 808, 909, 985
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	2 cut(s)	237, 983
SmlI	CTYRAG	1 cut(s)	1020
SmoI	CTYRAG	1 cut(s)	1020
Sse9I	AATT	9 cut(s)	11, 166, 224, 273, 308, 362, 659, 689, 880
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	4 cut(s)	135, 162, 182, 539
StyD4I	CCNGG	1 cut(s)	1036
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	213, 370, 448, 562, 655
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	4 cut(s)	201, 324, 884, 903
TasI	AATT	9 cut(s)	11, 166, 224, 273, 308, 362, 659, 689, 880
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	932
Tru1I	TTAA	4 cut(s)	276, 306, 594, 695
Tru9I	TTAA	4 cut(s)	276, 306, 594, 695
TscAI	CASTG	4 cut(s)	247, 373, 660, 873
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	36, 968
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	7 cut(s)	4, 76, 434, 518, 651, 803, 959
TspRI	CASTG	4 cut(s)	247, 373, 660, 873
Van91I	CCANNNNNTGG	1 cut(s)	461
VpaK11BI	GGWCC	2 cut(s)	237, 983
XapI	RAATTY	5 cut(s)	11, 166, 308, 362, 689
XbaI	TCTAGA	1 cut(s)	538
XspI	CTAG	4 cut(s)	135, 162, 182, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.