Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016182.1

Orthogroup ID

OG0012248

Physical Location & Seq

Genomic Coordinates Forward (+)

22530 .. 23898

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016182.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgcatcctccattaacgttacacaagcaccccatgtgtgcacaaatcattgaggagtttcagaaatgtcatttagatcatccttttgcaaaattcattggtgaatgtacagatctcaaaataaagcttgatcgctgttttcggcaggaaaaagcgttgaagaggaaagccaactttgaacagagtaaaaaattgagggacaggctacaagcttcaaggaaggaaactgctgaggcgatcactgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cmc1

Protein Analysis

82

Amino Acids

9.7

Weight (kDa)

9.21

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21192 AT4G21192
fragaria_vesca	FvH4_5g29590
malus_domestica	MD09G1270200.v1.1 MD17G1268300.v1.1
prunus_persica	Prupe.1G582900_v2.0.a1 Prupe.1G582900_v2.0.a1 Prupe.1G582900_v2.0.a1
pyrus_communis	pycom17g26690
rosa_chinensis	RchiOBHm_Chr7g0222581
rosa_multiflora	Rmu_sc0016182.1_g000006
rosa_roxburghii	Rroxscaffold_3G00236640
rosa_rugosa	Rorug07G0211000 Rorug07G0211100
rosa_samantha	Rh7AG354200 Rh7AG354600 Rh7CG371700
rosa_wichuraiana	Rw7G029790 Rw7G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	160, 179, 216
AluBI	AGCT	2 cut(s)	127, 212
AluI	AGCT	2 cut(s)	127, 212
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	231
BglII	AGATCT	1 cut(s)	112
BmsI	GCATC	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	231
BseGI	GGATG	2 cut(s)	4, 79
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	76, 112, 130, 237
BspCNI	CTCAG	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	107
BssMI	GATC	4 cut(s)	76, 112, 130, 237
Bst6I	CTCTTC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	4, 79
BstKTI	GATC	4 cut(s)	79, 115, 133, 240
BstMBI	GATC	4 cut(s)	76, 112, 130, 237
BstSLI	GKGCMC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	4, 79
BtsIMutI	CAGTG	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	4 cut(s)	127, 170, 205, 212
CviKI_1	RGCY	4 cut(s)	127, 170, 205, 212
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	78, 114, 132, 239
DpnII	GATC	4 cut(s)	76, 112, 130, 237
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	37
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	33
FokI	GGATG	1 cut(s)	66
Hin1II	CATG	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	125, 210
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	4, 41, 89
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	76, 112, 130, 237
LpnPI	CCDG	2 cut(s)	131, 187
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	4 cut(s)	78, 114, 132, 239
MboI	GATC	4 cut(s)	76, 112, 130, 237
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	2 cut(s)	92, 191
MnlI	CCTC	5 cut(s)	18, 46, 156, 189, 226
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	14
NdeII	GATC	4 cut(s)	76, 112, 130, 237
NlaIII	CATG	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	6
Psp1406I	AACGTT	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	4 cut(s)	76, 112, 130, 237
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	3 cut(s)	20, 129, 214
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	7 cut(s)	37, 46, 140, 158, 214, 221, 228
Sse9I	AATT	2 cut(s)	92, 191
TaiI	ACGT	1 cut(s)	20
TasI	AATT	2 cut(s)	92, 191
TatI	WGTACW	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	39
XapI	RAATTY	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.