Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009286

Physical Location & Seq

Genomic Coordinates Forward (+)

20765147 .. 20767667

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29890.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGTTCATGATCTTCCGTGTTCAGAAATGCTTTCAAAGGGTCTGCTTCCTAGGCAATTCTTCAAACTCTTCTGCCTTTTTGCATACTTGCTCATCTGCTGTGTCTCCAGTGGGGTCGTCACAATTGGAACGCCCAACAAGACTATCAGACCTTGACATTATCATAACTAGAGTTCCTGTTGGAAATAGTGATGATCAAGTACTATTGTCTCTTCAAAATGATCAGGCATGTAACAGCATTCAGCTCACGGATGTCCTCGTTCATCAATTGCTTCATCGATTTAAGAATGATTGGAAGTCGGCATTGGGTGTATTCAGATGGGCTGAGTCACGGCCTGGCTATGAACTCCCCCCAGATGCGTATGATATGATCATCGACATTCTAGGAAAAATGAGGCAGATGGATCAGACTATGGATTTGTTAGAGAGAATGCATCAGGATCGTCTCGTAACGCTCAAAACTGTAGGTAAGGTTATGAGAAGATTTGCTGGTGCAGGGAAATGGGAGGATGCCGTGAGGATATTTGATGGGTTAGGAAGATTTGGATTAGATAAGAACACCGAATCAATGAACTTGTTGCTTGACACACTCTGCAAAGAGAAAAAAGTTGAGGTCGCCCGTGATATCTTTTTAGAACTAAAATCACATATCTCACCAAATGCTCATACGTTTAACATTTTCAACCACGGCTGGTGCAAGGTCAATCGCGTTGATGAGGCACATTGGACAATCCAAGAAATGAAGGGTCATGGCTGTCTCCCTTGTGCCATCAGCTACTCAACCATTACCCTCTTTTATTGCCACAAATACAACTTTGGAAAGGTCTATGAACTGTTTGATGAAATGGAAGCTCAAGGCTGCCCTCCAAATGTTGTCACTTTCACTACTGTCATGTGTTATCTTACAAACTCTGGGGAATTCGAGGAAGCTATGCAATTATATGAGAGAATGAAATCAGCTGGATGTAAGCCTGACACCCTGTTCTACAACTCACTGATCCACACACTAGGAAGAGCTGGACGAGTGCCTGAAGCTATTCGTGTTTTCGAGGTTGAGATGCCTGAGAATGAGGTTCCTCATAATACATCAACTTACAATACGTTGATTGCCATGTTTTGCAATCATGCTCAAGAGGAAGAAGCCTTGAAAATCCTCCAGAAGATGGAAAGGTCTGGCCTCTGTAAGCCTGATGTTCAGACATACTATCCGTTGCTTAAAATGTGCTTCAAAACTGGCAAAACAGACAATTTTTTGATTAAGTTGGTGAATGACATGGTCAATGGACATCATCTCAGTTTTGATCTCTCAACATATACATTACTAATTCACGGTCTATGCAGAGCAGGTAAATGTGAGTGGGCGTATAGTCTTTTCGAGGAGATGATTGCTCAAGATATGAAGCCTAGATATAGGACTTGTCGTTTACTTTGGGATGAAGTTAAACTGAAGAATATGTCTGCAGCTGCTGACAGCATTGAAGATTTCATGAAGAAGCTCAGACCACATGTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

506

Amino Acids

58.01

Weight (kDa)

6.78

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	186 - 233	5.7e-08	PPR repeat family
PPR_2	PF13041	254 - 298	2e-08	PPR repeat family
PPR_long	PF17177	270 - 391	6.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	278 - 337	2.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	286 - 318	5.7e-06	PPR repeat
PPR_2	PF13041	289 - 326	4.7e-11	PPR repeat family
PPR_1	PF12854	321 - 350	1e-07	PPR repeat
PPR_2	PF13041	324 - 374	1.3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04130 AT3G04130
fragaria_vesca	FvH4_4g36630 FvH4_5g29890 FvH4_5g29890
malus_domestica	MD17G1227800.v1.1 MD17G1228100.v1.1
prunus_persica	Prupe.3G105000_v2.0.a1 Prupe.3G105000_v2.0.a1
pyrus_communis	pycom17g23070
rosa_chinensis	RchiOBHm_Chr7g0223501
rosa_laevigata	RLG00000001960
rosa_multiflora	Rmu_sc0002224.1_g000003
rosa_roxburghii	Rroxscaffold_3G00235660
rosa_rugosa	Rorug07G0217700 Rorug07G0217700 Rorug07G0217700
rosa_samantha	Rh7AG361100 Rh7BG351600 Rh7CG379600 Rh7DG356400
rosa_wichuraiana	Rw7G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1334
AccB7I	CCANNNNNTGG	1 cut(s)	1162
AccII	CGCG	1 cut(s)	708
AclWI	GGATC	3 cut(s)	411, 447, 991
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	2 cut(s)	1050, 1466
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	1162
AflIII	ACRYGT	1 cut(s)	1504
AgsI	TTSAA	7 cut(s)	35, 63, 215, 682, 1147, 1228, 1478
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	9 cut(s)	244, 774, 851, 929, 959, 1016, 1034, 1463, 1495
AluI	AGCT	9 cut(s)	244, 774, 851, 929, 959, 1016, 1034, 1463, 1495
Alw26I	GTCTC	4 cut(s)	108, 213, 449, 761
AlwI	GGATC	3 cut(s)	411, 447, 991
AlwNI	CAGNNNCTG	1 cut(s)	1466
AoxI	GGCC	2 cut(s)	332, 1174
ApeKI	GCWGC	3 cut(s)	858, 1460, 1463
ApoI	RAATTY	1 cut(s)	917
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspA2I	CCTAGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	645, 1276
AvrII	CCTAGG	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	845, 1450, 1472
BccI	CCATC	5 cut(s)	312, 394, 521, 776, 1156
BceAI	ACGGC	3 cut(s)	347, 497, 703
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	3 cut(s)	193, 220, 369
BcoDI	GTCTC	4 cut(s)	108, 213, 449, 761
BfaI	CTAG	5 cut(s)	50, 168, 383, 1007, 1404
BfmI	CTRYAG	2 cut(s)	462, 1458
BfuAI	ACCTGC	1 cut(s)	1334
BisI	GCNGC	3 cut(s)	859, 1461, 1464
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	3 cut(s)	860, 1462, 1465
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	1074
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	346, 442, 499, 1047
BpmI	CTGGAG	2 cut(s)	90, 1139
BpuEI	CTTGAG	3 cut(s)	837, 1113, 1374
Bsa29I	ATCGAT	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	49, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	1162
Bse1I	ACTGG	2 cut(s)	107, 1237
BseBI	CCWGG	1 cut(s)	336
BseCI	ATCGAT	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	49, 685
BseGI	GGATG	4 cut(s)	256, 514, 968, 1438
BseLI	CCNNNNNNNGG	1 cut(s)	1162
BseMII	CTCAG	4 cut(s)	315, 1053, 1306, 1510
BseNI	ACTGG	2 cut(s)	107, 1237
BseRI	GAGGAG	1 cut(s)	1391
BseXI	GCAGC	3 cut(s)	845, 1450, 1472
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	334, 1176
BshVI	ATCGAT	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	1162
BsmAI	GTCTC	4 cut(s)	108, 213, 449, 761
BsmBI	CGTCTC	1 cut(s)	449
BsmI	GAATGC	2 cut(s)	237, 435
BsnI	GGCC	2 cut(s)	334, 1176
Bsp143I	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
BspANI	GGCC	2 cut(s)	334, 1176
BspCNI	CTCAG	4 cut(s)	316, 1054, 1305, 1509
BspDI	ATCGAT	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	708
BspHI	TCATGA	2 cut(s)	6, 1485
BspLI	GGNNCC	1 cut(s)	1074
BspMAI	CTGCAG	1 cut(s)	1462
BspMI	ACCTGC	1 cut(s)	1334
BspPI	GGATC	3 cut(s)	411, 447, 991
BspQI	GCTCTTC	1 cut(s)	1006
BsrI	ACTGG	2 cut(s)	107, 1237
BssECI	CCNNGG	2 cut(s)	49, 685
BssMI	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	5 cut(s)	463, 834, 889, 1331, 1515
Bst6I	CTCTTC	3 cut(s)	73, 216, 1006
BstDEI	CTNAG	4 cut(s)	324, 1062, 1292, 1496
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	4 cut(s)	256, 514, 968, 1438
BstFNI	CGCG	1 cut(s)	708
BstKTI	GATC	8 cut(s)	12, 196, 223, 372, 406, 442, 999, 1303
BstMAI	GTCTC	4 cut(s)	108, 213, 449, 761
BstMBI	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	231, 1508
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	2 cut(s)	462, 1458
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	845, 1450, 1472
Bsu15I	ATCGAT	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	334, 1176
BsuTUI	ATCGAT	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	4 cut(s)	256, 514, 968, 1438
BtsIMutI	CAGTG	2 cut(s)	114, 992
BveI	ACCTGC	1 cut(s)	1334
CaiI	CAGNNNCTG	1 cut(s)	1466
CciI	TCATGA	2 cut(s)	6, 1485
ClaI	ATCGAT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	9 cut(s)	7, 228, 749, 892, 1111, 1124, 1273, 1486, 1505
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	4 cut(s)	324, 1062, 1292, 1496
DpnI	GATC	8 cut(s)	11, 195, 222, 371, 405, 441, 998, 1302
DpnII	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
Eam1104I	CTCTTC	3 cut(s)	73, 216, 1006
EarI	CTCTTC	3 cut(s)	73, 216, 1006
Eco130I	CCWWGG	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	1050, 1466
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	9 cut(s)	10, 231, 752, 895, 1114, 1127, 1276, 1489, 1508
FatI	CATG	9 cut(s)	6, 227, 748, 891, 1110, 1123, 1272, 1485, 1504
FbaI	TGATCA	3 cut(s)	193, 220, 369
Fnu4HI	GCNGC	3 cut(s)	859, 1461, 1464
FokI	GGATG	4 cut(s)	263, 521, 975, 1445
Fsp4HI	GCNGC	3 cut(s)	859, 1461, 1464
FspBI	CTAG	5 cut(s)	50, 168, 383, 1007, 1404
GluI	GCNGC	3 cut(s)	859, 1461, 1464
GsuI	CTGGAG	2 cut(s)	90, 1139
HaeIII	GGCC	2 cut(s)	334, 1176
Hin1II	CATG	9 cut(s)	10, 231, 752, 895, 1114, 1127, 1276, 1489, 1508
HinfI	GANTC	2 cut(s)	326, 563
HphI	GGTGA	2 cut(s)	645, 1276
Hpy166II	GTNNAC	1 cut(s)	1424
Hpy188I	TCNGA	6 cut(s)	24, 148, 317, 408, 1197, 1499
Hpy188III	TCNNGA	6 cut(s)	7, 437, 1130, 1156, 1391, 1486
Hpy8I	GTNNAC	1 cut(s)	1424
HpyAV	CCTTC	1 cut(s)	736
HpyCH4III	ACNGT	5 cut(s)	463, 834, 889, 1331, 1515
HpyCH4IV	ACGT	2 cut(s)	668, 1100
HpyCH4V	TGCA	9 cut(s)	82, 433, 494, 594, 696, 934, 1119, 1338, 1460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	324, 1062, 1292, 1496
HpySE526I	ACGT	2 cut(s)	668, 1100
Hsp92II	CATG	9 cut(s)	10, 231, 752, 895, 1114, 1127, 1276, 1489, 1508
Ksp22I	TGATCA	3 cut(s)	193, 220, 369
Kzo9I	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
LguI	GCTCTTC	1 cut(s)	1006
Lsp1109I	GCAGC	3 cut(s)	845, 1450, 1472
LweI	GCATC	4 cut(s)	346, 442, 499, 1047
MaeI	CTAG	5 cut(s)	50, 168, 383, 1007, 1404
MaeII	ACGT	2 cut(s)	668, 1100
MaeIII	GTNAC	5 cut(s)	117, 230, 327, 448, 874
MalI	GATC	8 cut(s)	11, 195, 222, 371, 405, 441, 998, 1302
MboI	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
MfeI	CAATTG	2 cut(s)	122, 266
MluCI	AATT	7 cut(s)	55, 122, 266, 917, 935, 1246, 1323
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	160
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	1035
MseI	TTAA	5 cut(s)	282, 672, 1215, 1257, 1440
MspA1I	CMGCKG	2 cut(s)	959, 1463
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	2 cut(s)	122, 266
Mva1269I	GAATGC	2 cut(s)	237, 435
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
NlaIII	CATG	9 cut(s)	10, 231, 752, 895, 1114, 1127, 1276, 1489, 1508
NlaIV	GGNNCC	1 cut(s)	1074
NmuCI	GTSAC	3 cut(s)	117, 327, 874
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	2 cut(s)	231, 1508
PagI	TCATGA	2 cut(s)	6, 1485
PciI	ACATGT	1 cut(s)	1504
PciSI	GCTCTTC	1 cut(s)	1006
PctI	GAATGC	2 cut(s)	237, 435
PdmI	GAANNNNTTC	1 cut(s)	1035
PfeI	GAWTC	1 cut(s)	563
PflFI	GACNNNGTC	1 cut(s)	1274
PflMI	CCANNNNNTGG	1 cut(s)	1162
PkrI	GCNGC	3 cut(s)	860, 1462, 1465
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	1504
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	1074
PstI	CTGCAG	1 cut(s)	1462
PstNI	CAGNNNCTG	1 cut(s)	1466
PsyI	GACNNNGTC	1 cut(s)	1274
PvuII	CAGCTG	2 cut(s)	959, 1463
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	1006
SaqAI	TTAA	5 cut(s)	282, 672, 1215, 1257, 1440
SatI	GCNGC	3 cut(s)	859, 1461, 1464
Sau3AI	GATC	8 cut(s)	9, 193, 220, 369, 403, 439, 996, 1300
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	336
SfaNI	GCATC	4 cut(s)	346, 442, 499, 1047
SfcI	CTRYAG	2 cut(s)	462, 1458
SmlI	CTYRAG	3 cut(s)	852, 1128, 1389
SmoI	CTYRAG	3 cut(s)	852, 1128, 1389
Sse9I	AATT	7 cut(s)	55, 122, 266, 917, 935, 1246, 1323
SspMI	CTAG	5 cut(s)	50, 168, 383, 1007, 1404
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	5 cut(s)	463, 834, 889, 1331, 1515
TaiI	ACGT	2 cut(s)	671, 1103
TaqI	TCGA	5 cut(s)	277, 375, 921, 1047, 1374
TasI	AATT	7 cut(s)	55, 122, 266, 917, 935, 1246, 1323
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	5 cut(s)	282, 672, 1215, 1257, 1440
Tru9I	TTAA	5 cut(s)	282, 672, 1215, 1257, 1440
TscAI	CASTG	2 cut(s)	114, 999
TseFI	GTSAC	3 cut(s)	117, 327, 874
TseI	GCWGC	3 cut(s)	858, 1460, 1463
Tsp45I	GTSAC	3 cut(s)	117, 327, 874
TspGWI	ACGGA	3 cut(s)	5, 263, 1197
TspRI	CASTG	2 cut(s)	114, 999
Tth111I	GACNNNGTC	1 cut(s)	1274
Van91I	CCANNNNNTGG	1 cut(s)	1162
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	2 cut(s)	231, 1508
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	1035
XspI	CTAG	5 cut(s)	50, 168, 383, 1007, 1404
ZrmI	AGTACT	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.