Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009286

Physical Location & Seq

Genomic Coordinates Forward (+)

8293893 .. 8299360

Gene Structure 5468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G105000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGAGCTAAAAGACATAATCTTTGAATTTCCTGGGGACATCTTCATGATCTTCCATGTTCAGAAATGCTTTAAAAGTGTCCGCTTCCGACGGAATACTTCAAACTCTTGCTCCTTTTTCCATACCTCTTCTGAAAATTGCTCACCGGCTCTTTCTTCAATTTTGTCTTCTCAGCAGGGGTCATCACAATTTGAGGACCCAACAAGACTACCGGACCTTGACATTATCATTGCTAAAGTATCTGTTGGTAGGACTGATGATGAGATTCTACAGTCTCTTGCACATGATCCGGCATACAATAGCATTCAGCTTACAGATAACCTTGTTGGTCAATTGTTCCATCGGTTTAAGAATGATTGGAAGTCTGCATTGGGTGTGTTTAGATGGGCAGAGTCACGCTCTGACTATAAACTCACCCCAGATGCATATGATATGATGGTTGACATTTTGGGTAAAATGAGGCAAATGGATAAGATTATGGGTTTGTTAGAAAAGATGCGTCAGGATCATCTGGTCACTCTTAACACTGTTGGTAAGGTTATGAGAAGGTTTGCTGGTGCAGGGAAATGGGAGGATGCTGTGAGGATGTTTGATCAGTTAGGAAGTTTTGGATTGGAGAAGAACACGGAATCAATGAACTTGTTGCTTGACACACTTTGTAAAGAGAACAAAGTTGAGCAGGCTCGTGAGATCTTTTTAGAGCTAAAATCACACATCTCGCCAAATGCTCATACATTTAACATTTTCATTCATGGTTGGTGCAAGATCAAACGGGTTGATGAGGCACACTGGACAATCCAAGAAATGAAGGGACATGGCTGTCGACCTTGTGTCATCAGCTACTCGACCATCATCCTATTTTATTGCCACCAATACAACTTTGTTAAGGTCTATGAATTGTTTGATGAAATGGAAGCTCAGGGGTGCCCGCCAAATGTTATTACCTTCACCTCTGTCATGTGTTATCTAGCTAAGTCTGAGGAGTTTGAGGAAGCTTTGCAATTATATGAGAGAATGAAATCTGCTGGATGTGATCCGGATACACTTTTTTACAACTCACTGATCCACACACTAGGAAGAGCTGGCCGGGTACGAGACGCTATTCATGTATTCGAGGTTGAAATGCCTAAGAAGGGGGTTCCTCCTAATACATCAACTTACAATACAATGATTGCCATGTTTTGCCATCATGCTGAAGAGCAAAAGGCCTTAGATGTCCTCTTGCAGATGGAAAATGCAAGGTTATGTAAGCCTGATGTTCAGACATACTATCCATTGTTTAAAATGTGCTTTAAAACTGGCAAAACAGACAATTTTTTGAGCAAGCTATTAGATGACATGGTTAATAGACATCATCTCAGTCTCGATCTCTCAACCTATACGCTTCTAATTCATGGACTATGCAGATCAAATAAGTGCGAGTGGGCGTATCTTCTCTTTGAGGAGATGATTGGTCAAGGGATAAAGCCTAGGTATAAAACATGCCGTTTGCTTTGGGACGAAGTTAAACTGAAGAATATGTTTGGCCCTGCTGATACCATTGAAGACTTCATGAAGAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

522

Amino Acids

60.29

Weight (kDa)

6.42

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04130 AT3G04130
fragaria_vesca	FvH4_4g36630 FvH4_5g29890 FvH4_5g29890
malus_domestica	MD17G1227800.v1.1 MD17G1228100.v1.1
prunus_persica	Prupe.3G105000_v2.0.a1 Prupe.3G105000_v2.0.a1
pyrus_communis	pycom17g23070
rosa_chinensis	RchiOBHm_Chr7g0223501
rosa_laevigata	RLG00000001960
rosa_multiflora	Rmu_sc0002224.1_g000003
rosa_roxburghii	Rroxscaffold_3G00235660
rosa_rugosa	Rorug07G0217700 Rorug07G0217700 Rorug07G0217700
rosa_samantha	Rh7AG361100 Rh7BG351600 Rh7CG379600 Rh7DG356400
rosa_wichuraiana	Rw7G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	823
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	2 cut(s)	82, 929
AclWI	GGATC	4 cut(s)	281, 513, 1028, 1057
AcoI	YGGCCR	1 cut(s)	1084
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	1215, 1532
AfaI	GTAC	1 cut(s)	1092
AfiI	CCNNNNNNNGG	1 cut(s)	1133
AgsI	TTSAA	5 cut(s)	26, 102, 159, 1121, 1544
AhdI	GACNNNNNGTC	1 cut(s)	830
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	9 cut(s)	7, 310, 703, 840, 917, 971, 995, 1082, 1327
AluI	AGCT	9 cut(s)	7, 310, 703, 840, 917, 971, 995, 1082, 1327
Alw26I	GTCTC	3 cut(s)	279, 1089, 1367
AlwI	GGATC	4 cut(s)	281, 513, 1028, 1057
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	1084, 1206, 1525
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspA2I	CCTAGG	1 cut(s)	1469
AspS9I	GGNCC	3 cut(s)	196, 214, 1526
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	3 cut(s)	135, 406, 940
AvaII	GGWCC	2 cut(s)	196, 214
AvrII	CCTAGG	1 cut(s)	1469
BaeGI	GKGCMC	1 cut(s)	929
BanI	GGYRCC	1 cut(s)	924
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	159, 1551
BccI	CCATC	6 cut(s)	348, 378, 430, 857, 1194, 1222
BceAI	ACGGC	1 cut(s)	1470
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	1088
BcoDI	GTCTC	3 cut(s)	279, 1089, 1367
BfaI	CTAG	3 cut(s)	968, 1073, 1470
BfmI	CTRYAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	1033
BglII	AGATCT	1 cut(s)	690
BlnI	CCTAGG	1 cut(s)	1469
Bme1390I	CCNGG	2 cut(s)	33, 1088
Bme18I	GGWCC	2 cut(s)	196, 214
BmeRI	GACNNNNNGTC	1 cut(s)	830
BmgT120I	GGNCC	3 cut(s)	196, 214, 1526
BmiI	GGNNCC	3 cut(s)	198, 926, 1140
BmrFI	CCNGG	2 cut(s)	33, 1088
BmsI	GCATC	3 cut(s)	412, 486, 565
BpiI	GAAGAC	2 cut(s)	159, 1551
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
Bpu10I	CCTNAGC	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	1088
BsaJI	CCNNGG	2 cut(s)	32, 1469
BsaWI	WCCGGW	2 cut(s)	211, 1036
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	1133
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	794, 1303
Bse3DI	GCAATG	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	1036
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	32, 1469
BseGI	GGATG	4 cut(s)	580, 591, 852, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	1133
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	4 cut(s)	185, 932, 969, 1372
BseNI	ACTGG	2 cut(s)	794, 1303
BseRI	GAGGAG	2 cut(s)	995, 1457
BseSI	GKGCMC	1 cut(s)	929
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	1086, 1208, 1527
BshNI	GGYRCC	1 cut(s)	924
BsiSI	CCGG	5 cut(s)	146, 212, 290, 1037, 1087
BslFI	GGGAC	3 cut(s)	50, 825, 1511
BslI	CCNNNNNNNGG	1 cut(s)	1133
BsmAI	GTCTC	3 cut(s)	279, 1089, 1367
BsmBI	CGTCTC	1 cut(s)	1089
BsmFI	GGGAC	3 cut(s)	50, 825, 1511
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	3 cut(s)	1086, 1208, 1527
Bsp1286I	GDGCHC	1 cut(s)	929
Bsp13I	TCCGGA	1 cut(s)	1036
BspACI	CCGC	2 cut(s)	82, 929
BspANI	GGCC	3 cut(s)	1086, 1208, 1527
BspCNI	CTCAG	4 cut(s)	184, 931, 970, 1371
BspEI	TCCGGA	1 cut(s)	1036
BspHI	TCATGA	2 cut(s)	45, 1551
BspLI	GGNNCC	3 cut(s)	198, 926, 1140
BspPI	GGATC	4 cut(s)	281, 513, 1028, 1057
BspQI	GCTCTTC	2 cut(s)	1072, 1191
BspT107I	GGYRCC	1 cut(s)	924
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	794, 1303
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	32, 1469
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	1469
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	273, 529
Bst6I	CTCTTC	3 cut(s)	133, 1072, 1191
BstC8I	GCNNGC	4 cut(s)	681, 929, 1084, 1325
BstDEI	CTNAG	7 cut(s)	171, 918, 972, 978, 1128, 1210, 1358
BstF5I	GGATG	4 cut(s)	580, 591, 852, 1034
BstMAI	GTCTC	3 cut(s)	279, 1089, 1367
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	1485
BstSCI	CCNGG	2 cut(s)	31, 1086
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	929
BstV2I	GAAGAC	2 cut(s)	159, 1551
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	1086, 1208, 1527
BtsCI	GGATG	4 cut(s)	580, 591, 852, 1034
BtsIMutI	CAGTG	3 cut(s)	525, 787, 1058
Cac8I	GCNNGC	4 cut(s)	681, 929, 1084, 1325
CciI	TCATGA	2 cut(s)	45, 1551
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	196, 214, 1526
CseI	GACGC	2 cut(s)	488, 1106
Csp6I	GTAC	1 cut(s)	1091
CviQI	GTAC	1 cut(s)	1091
DdeI	CTNAG	7 cut(s)	171, 918, 972, 978, 1128, 1210, 1358
DraI	TTTAAA	3 cut(s)	73, 1282, 1294
DrdI	GACNNNNNNGTC	1 cut(s)	819
DriI	GACNNNNNGTC	1 cut(s)	830
DseDI	GACNNNNNNGTC	1 cut(s)	819
EaeI	YGGCCR	1 cut(s)	1084
Eam1104I	CTCTTC	3 cut(s)	133, 1072, 1191
Eam1105I	GACNNNNNGTC	1 cut(s)	830
EarI	CTCTTC	3 cut(s)	133, 1072, 1191
Eco130I	CCWWGG	1 cut(s)	1469
Eco147I	AGGCCT	1 cut(s)	1208
Eco47I	GGWCC	2 cut(s)	196, 214
Eco57I	CTGAAG	2 cut(s)	1215, 1532
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	1469
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	1469
Esp3I	CGTCTC	1 cut(s)	1089
FaqI	GGGAC	3 cut(s)	50, 825, 1511
FauI	CCCGC	1 cut(s)	936
FauNDI	CATATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	823
FokI	GGATG	4 cut(s)	587, 598, 839, 1041
FspBI	CTAG	3 cut(s)	968, 1073, 1470
HaeIII	GGCC	3 cut(s)	1086, 1208, 1527
HapII	CCGG	5 cut(s)	146, 212, 290, 1037, 1087
HgaI	GACGC	2 cut(s)	488, 1106
HincII	GTYRAC	2 cut(s)	442, 824
HindII	GTYRAC	2 cut(s)	442, 824
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	3 cut(s)	265, 392, 629
HpaII	CCGG	5 cut(s)	146, 212, 290, 1037, 1087
HphI	GGTGA	3 cut(s)	135, 406, 940
Hpy166II	GTNNAC	2 cut(s)	442, 824
Hpy188I	TCNGA	6 cut(s)	63, 89, 133, 403, 979, 1263
Hpy188III	TCNNGA	6 cut(s)	46, 503, 686, 1037, 1364, 1552
Hpy8I	GTNNAC	2 cut(s)	442, 824
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	540, 802, 955, 1126
HpyCH4III	ACNGT	2 cut(s)	273, 529
HpyCH4V	TGCA	9 cut(s)	281, 368, 425, 560, 762, 1000, 1225, 1238, 1404
HpyF3I	CTNAG	7 cut(s)	171, 918, 972, 978, 1128, 1210, 1358
Kpn2I	TCCGGA	1 cut(s)	1036
Ksp22I	TGATCA	1 cut(s)	592
LguI	GCTCTTC	2 cut(s)	1072, 1191
LmnI	GCTCC	2 cut(s)	4, 116
LweI	GCATC	3 cut(s)	412, 486, 565
MaeI	CTAG	3 cut(s)	968, 1073, 1470
MaeIII	GTNAC	2 cut(s)	393, 514
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	929
MluCI	AATT	9 cut(s)	26, 136, 159, 188, 332, 896, 1001, 1312, 1389
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	1036
MseI	TTAA	9 cut(s)	72, 348, 522, 738, 885, 1281, 1293, 1344, 1506
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	5 cut(s)	146, 212, 290, 1037, 1087
MspR9I	CCNGG	2 cut(s)	33, 1088
MunI	CAATTG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	1088
NdeI	CATATG	1 cut(s)	427
NlaIV	GGNNCC	3 cut(s)	198, 926, 1140
NmuCI	GTSAC	2 cut(s)	393, 514
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	1485
PagI	TCATGA	2 cut(s)	45, 1551
PceI	AGGCCT	1 cut(s)	1208
PciSI	GCTCTTC	2 cut(s)	1072, 1191
PctI	GAATGC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	265, 629
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	198, 926, 1140
PspPI	GGNCC	3 cut(s)	196, 214, 1526
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	1092
RsaNI	GTAC	1 cut(s)	1091
RseI	CAYNNNNRTG	1 cut(s)	44
SalI	GTCGAC	1 cut(s)	822
SapI	GCTCTTC	2 cut(s)	1072, 1191
SaqAI	TTAA	9 cut(s)	72, 348, 522, 738, 885, 1281, 1293, 1344, 1506
Sau96I	GGNCC	3 cut(s)	196, 214, 1526
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	33, 1088
SduI	GDGCHC	1 cut(s)	929
SfaNI	GCATC	3 cut(s)	412, 486, 565
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	196, 214
SmiMI	CAYNNNNRTG	1 cut(s)	44
Sse9I	AATT	9 cut(s)	26, 136, 159, 188, 332, 896, 1001, 1312, 1389
SseBI	AGGCCT	1 cut(s)	1208
SsiI	CCGC	2 cut(s)	82, 929
SspMI	CTAG	3 cut(s)	968, 1073, 1470
StuI	AGGCCT	1 cut(s)	1208
StyD4I	CCNGG	2 cut(s)	31, 1086
StyI	CCWWGG	1 cut(s)	1469
TaaI	ACNGT	2 cut(s)	273, 529
TaqI	TCGA	4 cut(s)	823, 845, 1113, 1365
TasI	AATT	9 cut(s)	26, 136, 159, 188, 332, 896, 1001, 1312, 1389
TfiI	GAWTC	2 cut(s)	265, 629
Tru1I	TTAA	9 cut(s)	72, 348, 522, 738, 885, 1281, 1293, 1344, 1506
Tru9I	TTAA	9 cut(s)	72, 348, 522, 738, 885, 1281, 1293, 1344, 1506
TscAI	CASTG	3 cut(s)	532, 794, 1065
TseFI	GTSAC	2 cut(s)	393, 514
Tsp45I	GTSAC	2 cut(s)	393, 514
TspGWI	ACGGA	2 cut(s)	106, 641
TspRI	CASTG	3 cut(s)	532, 794, 1065
VpaK11BI	GGWCC	2 cut(s)	196, 214
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	1 cut(s)	1485
XmaJI	CCTAGG	1 cut(s)	1469
XmiI	GTMKAC	1 cut(s)	823
XspI	CTAG	3 cut(s)	968, 1073, 1470
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.