Rw7G030690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009286
Physical Location & Seq
Forward (+)
43555772 .. 43561232
5461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030690.1

Sequence Viewer

Length: 1512 bp
ATGGTCTTTCGTGTTCACAAATGCTTTAAGAGGCTCCGCTTCCTACCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTTTTCATCTGCTTTGTCTTCTCCACTGGGGTCGTCGCAGCGATTGGAAGACCCTACAAGACTATCAGACCTTGACATTATCATATCTAGAGTTCCTGTTGGAAGTACTGATGATCAAGTACTTTTGTCTCTTTCACATGATCAAGCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCAACGATTTAAGAACGATTGGAAGTCGGCACTGGGTGTGTTTAGATGGGCCGAGTCACGACCTGGCTATAAACTCCCCCCAGATGCGTATGATATGATCATCGACGTTTTAGGTAAAATGAGGCAGATGGATCAGACCATGCATTTGTTAGAAAGAATGCATCAGGATCGTCTGGTAACACTCAACACTGTAGGTAAGGTTATGAGAAGATTCGCTGGTGCGGGGAAATGGGAGGATGCTGTGAGGATATTTGATGGGTTAGGAAGATTTGGATTAGACAAGAACACAGAATCAATGAACTTGTTGCTTGACACACTCTGCAAAGAGAACAAAGTTGAGGTCGCCCGCGATATCTTTTTAGAACTAAAATCACACATCTCCCCAAATGCTCATACGTTTAACATTTTCATTCACGGCTGGTGCAAGGTCAATCGGGTTGATGAGGCACACTGGACAATCCAAGAAATGAAGGGTCATGGCTGTCGCCCCTGTGCCATTAGCTACTCAACCATTATCCTCTTTTATTGCCACAAGTACAACTTTGGTAAGGTCTATGAACTGTTTGATGAAATGGAAGCTCAAGGCTGCCCTCCAAATGTTGTCACTTTCACCACTGTTATGTGTTATCTTGCAAAGTCTGAGGAATTCGAGGAAGCTATGCAATTATATGAGAGAATGAAATCAGCTGGATGTAAACCTGATACCCTGTTCTACAACTCACTGATCCACACACTAGGAAGAGCTGGACGAGTGCGTGAAGCTATTCATGTTTTTGAGGTTGAGATGCCTGAGAATGAGGTTCCTCACAATACATCAACTTACAATACGATGATTGCCATGTTTTGCAATAATGCTCAGGAGGAGGAAGCCTTGAAAATCCTCCAGAAGATGGAAAGTTCAGGGCTCTGTAAGCCTGATGTTCAGACATACTATCCGTTGCTTAAAATGTGCTTCAAAACTGGCAAAACAGACAATTGTTTGAATGAGTTAGTGAATGACATGGTCAATGGACATCATCTCAGTCTTGATCTCTCAACATATACACTTCTAATTCACGGTCTATGCAGAGCAGGTAAATGTGAGTGGGCTTACAGTCTGTTCAAAGAGATGATTGCTCAAGAGATGAAGCCTAGATATAAGACATGTCGTTTGCTTTGGGATGAAGTCAAACTGAAGAATATGTCTGCAGCTGCTGACAGCATTGCAGATTTCATGCAGAAGCTGTAA

Protein Analysis

503

Amino Acids

57.79

Weight (kDa)

7.01

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 190 - 237 5.5e-10 PPR repeat family
PPR_1 PF12854 221 - 245 1.7e-07 PPR repeat
PPR_2 PF13041 223 - 267 3.6e-09 PPR repeat family
PPR_2 PF13041 258 - 307 3.4e-11 PPR repeat family
PPR_long PF17177 275 - 353 8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 282 - 341 2.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 290 - 322 9.4e-06 PPR repeat
PPR_2 PF13041 293 - 330 7.8e-11 PPR repeat family
PPR_long PF17177 306 - 477 3.2e-13 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 325 - 354 6.8e-08 PPR repeat
PPR_2 PF13041 328 - 378 5.9e-10 PPR repeat family
PPR_3 PF13812 356 - 412 3.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 365 - 414 3e-10 PPR repeat family
PPR PF01535 367 - 397 3e-06 PPR repeat
PPR_1 PF12854 435 - 465 1.7e-09 PPR repeat
PPR_2 PF13041 438 - 472 9.8e-06 PPR repeat family
PPR PF01535 440 - 466 1.3e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1346
AccB7I CCANNNNNTGG 1 cut(s) 1174
AccII CGCG 1 cut(s) 633
AciI CCGC 3 cut(s) 37, 506, 631
AclWI GGATC 3 cut(s) 423, 459, 1003
AcsI RAATTY 1 cut(s) 929
AcuI CTGAAG 1 cut(s) 1478
AdeI CACNNNGTG 1 cut(s) 320
AfaI GTAC 3 cut(s) 199, 213, 821
AfiI CCNNNNNNNGG 1 cut(s) 1174
AflIII ACRYGT 1 cut(s) 1427
AgsI TTSAA 6 cut(s) 57, 89, 1159, 1240, 1267, 1387
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 9 cut(s) 256, 786, 863, 941, 971, 1028, 1046, 1475, 1507
AluI AGCT 9 cut(s) 256, 786, 863, 941, 971, 1028, 1046, 1475, 1507
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 3 cut(s) 423, 459, 1003
AlwNI CAGNNNCTG 2 cut(s) 1478, 1507
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 4 cut(s) 130, 870, 1472, 1475
ApoI RAATTY 1 cut(s) 929
ArsI GACNNNNNNTTYG 6 cut(s) 412, 444, 609, 641, 1417, 1449
Asp700I GAANNNNTTC 1 cut(s) 1047
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 886
BanII GRGCYC 1 cut(s) 1191
BbsI GAAGAC 2 cut(s) 102, 147
BbvI GCAGC 4 cut(s) 142, 857, 1462, 1484
BccI CCATC 4 cut(s) 324, 406, 533, 1168
BceAI ACGGC 1 cut(s) 715
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 3 cut(s) 205, 232, 381
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 180, 1019, 1416
BfmI CTRYAG 2 cut(s) 474, 1470
BfuAI ACCTGC 1 cut(s) 1346
BisI GCNGC 4 cut(s) 131, 871, 1473, 1476
BlsI GCNGC 4 cut(s) 132, 872, 1474, 1477
BmcAI AGTACT 2 cut(s) 199, 213
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 35, 1086
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 2 cut(s) 128, 326
BmsI GCATC 4 cut(s) 358, 454, 511, 1059
BmuI ACTGGG 2 cut(s) 128, 326
BpiI GAAGAC 2 cut(s) 102, 147
BpmI CTGGAG 1 cut(s) 1151
Bpu10I CCTNAGC 1 cut(s) 1140
BpuEI CTTGAG 2 cut(s) 849, 1386
Bsc4I CCNNNNNNNGG 1 cut(s) 1174
Bse1I ACTGG 4 cut(s) 123, 321, 740, 1249
Bse3DI GCAATG 1 cut(s) 1485
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 3 cut(s) 526, 980, 1450
BseLI CCNNNNNNNGG 1 cut(s) 1174
BseMI GCAATG 1 cut(s) 1485
BseMII CTCAG 4 cut(s) 915, 1065, 1154, 1318
BseNI ACTGG 4 cut(s) 123, 321, 740, 1249
BseRI GAGGAG 1 cut(s) 1160
BseXI GCAGC 4 cut(s) 142, 857, 1462, 1484
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 1174
BsmAI GTCTC 1 cut(s) 225
BsmI GAATGC 2 cut(s) 249, 447
BsnI GGCC 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 1191
Bsp143I GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
BspACI CCGC 3 cut(s) 37, 506, 631
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 4 cut(s) 916, 1066, 1153, 1317
BspFNI CGCG 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 35, 1086
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 1 cut(s) 1346
BspPI GGATC 3 cut(s) 423, 459, 1003
BspQI GCTCTTC 1 cut(s) 1018
BsrDI GCAATG 1 cut(s) 1485
BsrI ACTGG 4 cut(s) 123, 321, 740, 1249
BssMI GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 5 cut(s) 475, 846, 901, 1343, 1379
Bst6I CTCTTC 2 cut(s) 67, 1018
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 4 cut(s) 924, 1074, 1140, 1304
BstF5I GGATG 3 cut(s) 526, 980, 1450
BstFNI CGCG 1 cut(s) 633
BstKTI GATC 7 cut(s) 208, 235, 384, 418, 454, 1011, 1315
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
BstMWI GCNNNNNNNGC 1 cut(s) 1195
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 2 cut(s) 243, 1431
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 474, 1470
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 142, 857, 1462, 1484
BstV2I GAAGAC 2 cut(s) 102, 147
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 526, 980, 1450
BtsIMutI CAGTG 6 cut(s) 116, 314, 471, 733, 897, 1004
BveI ACCTGC 1 cut(s) 1346
Cac8I GCNNGC 1 cut(s) 631
CaiI CAGNNNCTG 2 cut(s) 1478, 1507
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 3 cut(s) 198, 212, 820
CviAII CATG 9 cut(s) 230, 240, 424, 761, 1052, 1123, 1285, 1428, 1498
CviQI GTAC 3 cut(s) 198, 212, 820
DdeI CTNAG 4 cut(s) 924, 1074, 1140, 1304
DpnI GATC 7 cut(s) 207, 234, 383, 417, 453, 1010, 1314
DpnII GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
DraIII CACNNNGTG 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 67, 1018
EarI CTCTTC 2 cut(s) 67, 1018
Eco24I GRGCYC 1 cut(s) 1191
Eco32I GATATC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 1478
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 1 cut(s) 637
EcoT22I ATGCAT 2 cut(s) 429, 447
EcoT38I GRGCYC 1 cut(s) 1191
FaeI CATG 9 cut(s) 233, 243, 427, 764, 1055, 1126, 1288, 1431, 1501
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FatI CATG 9 cut(s) 229, 239, 423, 760, 1051, 1122, 1284, 1427, 1497
FauI CCCGC 2 cut(s) 499, 638
FbaI TGATCA 3 cut(s) 205, 232, 381
Fnu4HI GCNGC 4 cut(s) 131, 871, 1473, 1476
FokI GGATG 3 cut(s) 533, 987, 1457
FriOI GRGCYC 1 cut(s) 1191
Fsp4HI GCNGC 4 cut(s) 131, 871, 1473, 1476
FspBI CTAG 3 cut(s) 180, 1019, 1416
GluI GCNGC 4 cut(s) 131, 871, 1473, 1476
GsuI CTGGAG 1 cut(s) 1151
HaeIII GGCC 1 cut(s) 335
Hin1II CATG 9 cut(s) 233, 243, 427, 764, 1055, 1126, 1288, 1431, 1501
HinfI GANTC 3 cut(s) 338, 495, 575
HphI GGTGA 1 cut(s) 886
Hpy166II GTNNAC 2 cut(s) 16, 980
Hpy188I TCNGA 4 cut(s) 160, 420, 925, 1209
Hpy188III TCNNGA 7 cut(s) 180, 342, 449, 1142, 1168, 1310, 1403
Hpy8I GTNNAC 2 cut(s) 16, 980
Hpy99I CGWCG 2 cut(s) 130, 392
HpyAV CCTTC 1 cut(s) 748
HpyCH4III ACNGT 5 cut(s) 475, 846, 901, 1343, 1379
HpyCH4IV ACGT 2 cut(s) 390, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 1195
HpyF3I CTNAG 4 cut(s) 924, 1074, 1140, 1304
HpySE526I ACGT 2 cut(s) 390, 680
Hsp92II CATG 9 cut(s) 233, 243, 427, 764, 1055, 1126, 1288, 1431, 1501
Ksp22I TGATCA 3 cut(s) 205, 232, 381
Kzo9I GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
LguI GCTCTTC 1 cut(s) 1018
LmnI GCTCC 1 cut(s) 39
Lsp1109I GCAGC 4 cut(s) 142, 857, 1462, 1484
LweI GCATC 4 cut(s) 358, 454, 511, 1059
MaeI CTAG 3 cut(s) 180, 1019, 1416
MaeII ACGT 2 cut(s) 390, 680
MaeIII GTNAC 3 cut(s) 339, 460, 886
MalI GATC 7 cut(s) 207, 234, 383, 417, 453, 1010, 1314
MboI GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
MboII GAAGA 8 cut(s) 54, 102, 152, 504, 561, 1035, 1183, 1471
MfeI CAATTG 2 cut(s) 278, 1258
MhlI GDGCHC 1 cut(s) 1191
MluCI AATT 5 cut(s) 278, 929, 947, 1258, 1335
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 2 cut(s) 172, 310
Mph1103I ATGCAT 2 cut(s) 429, 447
MroXI GAANNNNTTC 1 cut(s) 1047
MseI TTAA 4 cut(s) 27, 294, 684, 1227
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 971, 1475
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 2 cut(s) 278, 1258
Mva1269I GAATGC 2 cut(s) 249, 447
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 1 cut(s) 1195
NdeII GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
NlaIII CATG 9 cut(s) 233, 243, 427, 764, 1055, 1126, 1288, 1431, 1501
NlaIV GGNNCC 2 cut(s) 35, 1086
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 339, 886
NsiI ATGCAT 2 cut(s) 429, 447
NspI RCATGY 2 cut(s) 243, 1431
PciI ACATGT 1 cut(s) 1427
PciSI GCTCTTC 1 cut(s) 1018
PctI GAATGC 2 cut(s) 249, 447
PdmI GAANNNNTTC 1 cut(s) 1047
PfeI GAWTC 2 cut(s) 495, 575
PflFI GACNNNGTC 1 cut(s) 1286
PflMI CCANNNNNTGG 1 cut(s) 1174
PkrI GCNGC 4 cut(s) 132, 872, 1474, 1477
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PscI ACATGT 1 cut(s) 1427
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 35, 1086
PspPI GGNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 1474
PstNI CAGNNNCTG 2 cut(s) 1478, 1507
PsyI GACNNNGTC 1 cut(s) 1286
PvuII CAGCTG 2 cut(s) 971, 1475
RsaI GTAC 3 cut(s) 199, 213, 821
RsaNI GTAC 3 cut(s) 198, 212, 820
RseI CAYNNNNRTG 1 cut(s) 902
SapI GCTCTTC 1 cut(s) 1018
SaqAI TTAA 4 cut(s) 27, 294, 684, 1227
SatI GCNGC 4 cut(s) 131, 871, 1473, 1476
Sau3AI GATC 7 cut(s) 205, 232, 381, 415, 451, 1008, 1312
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 2 cut(s) 199, 213
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 1191
SfaNI GCATC 4 cut(s) 358, 454, 511, 1059
SfcI CTRYAG 2 cut(s) 474, 1470
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 864, 1401
SmoI CTYRAG 2 cut(s) 864, 1401
Sse9I AATT 5 cut(s) 278, 929, 947, 1258, 1335
SsiI CCGC 3 cut(s) 37, 506, 631
SspMI CTAG 3 cut(s) 180, 1019, 1416
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 5 cut(s) 475, 846, 901, 1343, 1379
TaiI ACGT 2 cut(s) 393, 683
TaqI TCGA 2 cut(s) 387, 933
TasI AATT 5 cut(s) 278, 929, 947, 1258, 1335
TatI WGTACW 3 cut(s) 197, 211, 819
TfiI GAWTC 2 cut(s) 495, 575
Tru1I TTAA 4 cut(s) 27, 294, 684, 1227
Tru9I TTAA 4 cut(s) 27, 294, 684, 1227
TscAI CASTG 6 cut(s) 123, 321, 478, 740, 904, 1011
TseFI GTSAC 2 cut(s) 339, 886
TseI GCWGC 4 cut(s) 130, 870, 1472, 1475
Tsp45I GTSAC 2 cut(s) 339, 886
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 6 cut(s) 123, 321, 478, 740, 904, 1011
Tth111I GACNNNGTC 1 cut(s) 1286
Van91I CCANNNNNTGG 1 cut(s) 1174
XapI RAATTY 1 cut(s) 929
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 2 cut(s) 243, 1431
XmnI GAANNNNTTC 1 cut(s) 1047
XspI CTAG 3 cut(s) 180, 1019, 1416
ZrmI AGTACT 2 cut(s) 199, 213
Zsp2I ATGCAT 2 cut(s) 429, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.