Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009286

Physical Location & Seq

Genomic Coordinates Forward (+)

19448743 .. 19468902

Gene Structure 20160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGAGCATAAGAATAAGTCATTGGCAACTGCAACTTCTCAAGCTCAAGGAGCTTCTGCTGACCCCAAGGTCGACAGATTGAGTACTGTTCCACGCGAAGTTTCTCACCATATTCTTTCATTGGTCAGTTTTAAAGATCTCACTCGCGTGGGCAGCATGTCCAAAAGATGCAGAGAGTTTTATCTATCAACTCCATCATTGAATTTTTCTTCCTTGTATGGAAACAGGCAGCAGCAATTGAACTTGTTGAATTGTATAGATAGGTATATGATTCGTCGCAGGGATGATAAGATAAAGAACTTTCGTATTCATTGGCGTTTCTCTGCAGGAATTTCAGAAGAGAGTTTCCGAATGATGACTTGGATCCTTATTGCAGTGAGGTGCAATGTTGAAGTGCTTGATCTTGAGTTGAGGTTGAATACAAACGATGGGGCAACACTTGAATTGCCATCTTGCATCTATTGTTGTGAATCTTTGAGGTCTCTGTTGATCAGGACAGAGACAGTTCTTAAAGCACCCTCCTTTGCCTGTTCCAATAATCTCCAGTACTTGAAGTTGACTAGTGTTAGAATGGATGATGGGTTTGGCAAATGGATCTCATGCTCATGCAAATTCATTAAGGAACTATTGTTAGAAAATGTTCATGTTGGAAGTTTCACCATTGAAAGCTCGTCTTTGGAATCATTTACGTTGTTGTATTGCCATAATAGTGACCCCTGTCATTTTAGCATCTCAGGTGAGAAACTTGCTGAGATAAATATAAAGTGGGAAAATAGTAAAGCTAGCAGCAGTATTACCAGATCATTAAATGTTTATGCTCCAAATCTCAAGTATTTGAAATGGATTGGGAATTTGTTGAATTACCAAAATTTGGGGAAATTTATGTGTTTAGAGAAGGCTCATATCTTTCTCAAGCGTCAGGGAGATGACTATGACTTTGACAATGCATTTGAGGTTCTTTGCAGTTTCTACAGGGTTAAATCACTTGTTCTGAGCGGGGAGGCTATTAAGGTATTGCTCAGGGAAGGTTCCATGCATGCCCCATTGGATGGTACTACTTACTTGGGTGTGCATATTAAGAGCTTGACTGATGACCTAGTCCCTGCAATGGTCTCTCTTCTGAGAGGAGTGCCTAATCTGAAGACTTTGTACATCAATTCTTACCCTTCCTTGCACATTGTTAAACCGAAAGCATGTGGTTTTAAGAGGAAATACTGGAAATCCCAAAATCTGGATTGTATTCATCAGCTTGAGGAGGTATCTATAGCACTCTCCACCGGTTATCCTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

431

Amino Acids

49.05

Weight (kDa)

8.9

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	121 - 283	3.8e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009286)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04130 AT3G04130
fragaria_vesca	FvH4_4g36630 FvH4_5g29890 FvH4_5g29890
malus_domestica	MD17G1227800.v1.1 MD17G1228100.v1.1
prunus_persica	Prupe.3G105000_v2.0.a1 Prupe.3G105000_v2.0.a1
pyrus_communis	pycom17g23070
rosa_chinensis	RchiOBHm_Chr7g0223501
rosa_laevigata	RLG00000001960
rosa_multiflora	Rmu_sc0002224.1_g000003
rosa_roxburghii	Rroxscaffold_3G00235660
rosa_rugosa	Rorug07G0217700 Rorug07G0217700 Rorug07G0217700
rosa_samantha	Rh7AG361100 Rh7BG351600 Rh7CG379600 Rh7DG356400
rosa_wichuraiana	Rw7G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
AccB7I	CCANNNNNTGG	3 cut(s)	871, 1049, 1231
AccBSI	CCGCTC	1 cut(s)	996
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	2 cut(s)	96, 147
AciI	CCGC	1 cut(s)	996
AclWI	GGATC	3 cut(s)	358, 371, 602
AcsI	RAATTY	6 cut(s)	202, 330, 611, 850, 868, 878
AcuI	CTGAAG	1 cut(s)	1160
AfaI	GTAC	4 cut(s)	85, 548, 1054, 1151
AfiI	CCNNNNNNNGG	4 cut(s)	871, 1049, 1108, 1231
AgeI	ACCGGT	1 cut(s)	1277
AhlI	ACTAGT	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 343, 375
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	44, 53, 669, 782, 1083, 1249
AluI	AGCT	6 cut(s)	44, 53, 669, 782, 1083, 1249
Alw26I	GTCTC	3 cut(s)	486, 494, 1117
AlwI	GGATC	3 cut(s)	358, 371, 602
ApeKI	GCWGC	4 cut(s)	153, 229, 232, 786
ApoI	RAATTY	6 cut(s)	202, 330, 611, 850, 868, 878
ArsI	GACNNNNNNTTYG	4 cut(s)	920, 932, 952, 964
AsiGI	ACCGGT	1 cut(s)	1277
Asp700I	GAANNNNTTC	1 cut(s)	639
AsuHPI	GGTGA	3 cut(s)	98, 649, 749
AsuNHI	GCTAGC	1 cut(s)	782
BamHI	GGATCC	1 cut(s)	363
BarI	GAAGNNNNNNTAC	2 cut(s)	1133, 1165
BbsI	GAAGAC	1 cut(s)	1148
BbvI	GCAGC	4 cut(s)	165, 241, 244, 798
BccI	CCATC	5 cut(s)	202, 422, 457, 572, 1043
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	3 cut(s)	486, 494, 1117
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	3 cut(s)	561, 783, 1097
BfmI	CTRYAG	3 cut(s)	324, 970, 1263
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	4 cut(s)	154, 230, 233, 787
BlsI	GCNGC	4 cut(s)	155, 231, 234, 788
BmcAI	AGTACT	2 cut(s)	85, 548
BmiI	GGNNCC	2 cut(s)	365, 1030
BmsI	GCATC	3 cut(s)	158, 465, 738
BmtI	GCTAGC	1 cut(s)	786
BoxI	GACNNNNGTC	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	1148
BpmI	CTGGAG	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	1019
BpuEI	CTTGAG	6 cut(s)	24, 30, 425, 812, 896, 1271
BsaI	GGTCTC	2 cut(s)	486, 1117
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	1277
Bsc4I	CCNNNNNNNGG	4 cut(s)	871, 1049, 1108, 1231
Bse118I	RCCGGY	1 cut(s)	1277
Bse1I	ACTGG	2 cut(s)	544, 1220
Bse3DI	GCAATG	2 cut(s)	391, 1113
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	289, 580, 1054
BseLI	CCNNNNNNNGG	4 cut(s)	871, 1049, 1108, 1231
BseMI	GCAATG	2 cut(s)	391, 1113
BseMII	CTCAG	5 cut(s)	741, 747, 983, 1033, 1112
BseNI	ACTGG	2 cut(s)	544, 1220
BseRI	GAGGAG	2 cut(s)	1140, 1268
BseXI	GCAGC	4 cut(s)	165, 241, 244, 798
Bsh1236I	CGCG	2 cut(s)	96, 147
BshTI	ACCGGT	1 cut(s)	1277
BsiSI	CCGG	1 cut(s)	1278
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	4 cut(s)	871, 1049, 1108, 1231
BsmAI	GTCTC	3 cut(s)	486, 494, 1117
BsmFI	GGGAC	1 cut(s)	1085
Bso31I	GGTCTC	2 cut(s)	486, 1117
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
BspACI	CCGC	1 cut(s)	996
BspCNI	CTCAG	5 cut(s)	742, 746, 984, 1032, 1113
BspFNI	CGCG	2 cut(s)	96, 147
BspLI	GGNNCC	2 cut(s)	365, 1030
BspMAI	CTGCAG	1 cut(s)	328
BspOI	GCTAGC	1 cut(s)	786
BspPI	GGATC	3 cut(s)	358, 371, 602
BspTNI	GGTCTC	2 cut(s)	486, 1117
BsrBI	CCGCTC	1 cut(s)	996
BsrDI	GCAATG	2 cut(s)	391, 1113
BsrFI	RCCGGY	1 cut(s)	1277
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	2 cut(s)	544, 1220
BssAI	RCCGGY	1 cut(s)	1277
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	88, 505
Bst6I	CTCTTC	2 cut(s)	333, 1122
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	2 cut(s)	784, 1038
BstDEI	CTNAG	5 cut(s)	733, 750, 992, 1019, 1121
BstF5I	GGATG	3 cut(s)	289, 580, 1054
BstFNI	CGCG	2 cut(s)	96, 147
BstKTI	GATC	6 cut(s)	139, 366, 403, 492, 597, 803
BstMAI	GTCTC	3 cut(s)	486, 494, 1117
BstMBI	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 153
BstNSI	RCATGY	3 cut(s)	160, 1040, 1197
BstPAI	GACNNNNGTC	1 cut(s)	717
BstSFI	CTRYAG	3 cut(s)	324, 970, 1263
BstUI	CGCG	2 cut(s)	96, 147
BstV1I	GCAGC	4 cut(s)	165, 241, 244, 798
BstV2I	GAAGAC	1 cut(s)	1148
BstX2I	RGATCY	3 cut(s)	136, 363, 594
BstYI	RGATCY	3 cut(s)	136, 363, 594
BtsCI	GGATG	3 cut(s)	289, 580, 1054
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	784, 1038
Cfr10I	RCCGGY	1 cut(s)	1277
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	4 cut(s)	84, 547, 1053, 1150
CspAI	ACCGGT	1 cut(s)	1277
CviAII	CATG	7 cut(s)	157, 600, 606, 644, 1033, 1037, 1194
CviJI	RGCY	8 cut(s)	44, 53, 669, 782, 899, 1004, 1083, 1249
CviKI_1	RGCY	8 cut(s)	44, 53, 669, 782, 899, 1004, 1083, 1249
CviQI	GTAC	4 cut(s)	84, 547, 1053, 1150
DdeI	CTNAG	5 cut(s)	733, 750, 992, 1019, 1121
DpnI	GATC	6 cut(s)	138, 365, 402, 491, 596, 802
DpnII	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
DraI	TTTAAA	1 cut(s)	133
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	333, 1122
EarI	CTCTTC	2 cut(s)	333, 1122
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	2 cut(s)	486, 1117
Eco57I	CTGAAG	1 cut(s)	1160
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	2 cut(s)	949, 1038
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	7 cut(s)	160, 603, 609, 647, 1036, 1040, 1197
FalI	AAGNNNNNCTT	2 cut(s)	658, 690
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	7 cut(s)	156, 599, 605, 643, 1032, 1036, 1193
FauI	CCCGC	1 cut(s)	989
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	154, 230, 233, 787
FokI	GGATG	3 cut(s)	296, 587, 1061
Fsp4HI	GCNGC	4 cut(s)	154, 230, 233, 787
FspBI	CTAG	3 cut(s)	561, 783, 1097
GluI	GCNGC	4 cut(s)	154, 230, 233, 787
GsuI	CTGGAG	1 cut(s)	527
HapII	CCGG	1 cut(s)	1278
HgaI	GACGC	1 cut(s)	905
Hin1II	CATG	7 cut(s)	160, 603, 609, 647, 1036, 1040, 1197
HincII	GTYRAC	2 cut(s)	73, 558
HindII	GTYRAC	2 cut(s)	73, 558
HinfI	GANTC	3 cut(s)	271, 470, 680
HpaII	CCGG	1 cut(s)	1278
HphI	GGTGA	3 cut(s)	98, 649, 749
Hpy166II	GTNNAC	2 cut(s)	73, 558
Hpy188I	TCNGA	5 cut(s)	337, 350, 993, 1122, 1140
Hpy188III	TCNNGA	3 cut(s)	404, 493, 1232
Hpy8I	GTNNAC	2 cut(s)	73, 558
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	3 cut(s)	889, 1019, 1176
HpyCH4III	ACNGT	2 cut(s)	88, 505
HpyCH4IV	ACGT	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 153
HpyF3I	CTNAG	5 cut(s)	733, 750, 992, 1019, 1121
HpySE526I	ACGT	1 cut(s)	689
Hsp92II	CATG	7 cut(s)	160, 603, 609, 647, 1036, 1040, 1197
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
LmnI	GCTCC	3 cut(s)	4, 50, 823
Lsp1109I	GCAGC	4 cut(s)	165, 241, 244, 798
LweI	GCATC	3 cut(s)	158, 465, 738
MaeI	CTAG	3 cut(s)	561, 783, 1097
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	6 cut(s)	138, 365, 402, 491, 596, 802
MbiI	CCGCTC	1 cut(s)	996
MboI	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
MboII	GAAGA	4 cut(s)	201, 350, 1109, 1153
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	3 cut(s)	136, 363, 594
MmeI	TCCRAC	1 cut(s)	628
Mph1103I	ATGCAT	2 cut(s)	949, 1038
MroXI	GAANNNNTTC	1 cut(s)	639
MslI	CAYNNNNRTG	3 cut(s)	146, 604, 708
MspI	CCGG	1 cut(s)	1278
MunI	CAATTG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	96, 147
MwoI	GCNNNNNNNGC	2 cut(s)	50, 153
NdeII	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
NheI	GCTAGC	1 cut(s)	782
NlaIII	CATG	7 cut(s)	160, 603, 609, 647, 1036, 1040, 1197
NlaIV	GGNNCC	2 cut(s)	365, 1030
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	2 cut(s)	949, 1038
NspI	RCATGY	3 cut(s)	160, 1040, 1197
OliI	CACNNNNGTG	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	1040
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	3 cut(s)	271, 470, 680
PflFI	GACNNNGTC	1 cut(s)	1097
PflMI	CCANNNNNTGG	3 cut(s)	871, 1049, 1231
PinAI	ACCGGT	1 cut(s)	1277
PkrI	GCNGC	4 cut(s)	155, 231, 234, 788
PshAI	GACNNNNGTC	1 cut(s)	717
PspN4I	GGNNCC	2 cut(s)	365, 1030
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	3 cut(s)	136, 363, 594
PsyI	GACNNNGTC	1 cut(s)	1097
RsaI	GTAC	4 cut(s)	85, 548, 1054, 1151
RsaNI	GTAC	4 cut(s)	84, 547, 1053, 1150
RseI	CAYNNNNRTG	3 cut(s)	146, 604, 708
SalI	GTCGAC	1 cut(s)	71
SatI	GCNGC	4 cut(s)	154, 230, 233, 787
Sau3AI	GATC	6 cut(s)	136, 363, 400, 489, 594, 800
ScaI	AGTACT	2 cut(s)	85, 548
SfaNI	GCATC	3 cut(s)	158, 465, 738
SfcI	CTRYAG	3 cut(s)	324, 970, 1263
SmiMI	CAYNNNNRTG	3 cut(s)	146, 604, 708
SmlI	CTYRAG	6 cut(s)	39, 45, 404, 827, 911, 1250
SmoI	CTYRAG	6 cut(s)	39, 45, 404, 827, 911, 1250
SpeI	ACTAGT	1 cut(s)	560
SphI	GCATGC	1 cut(s)	1040
SsiI	CCGC	1 cut(s)	996
SspMI	CTAG	3 cut(s)	561, 783, 1097
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	88, 505
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	1 cut(s)	72
TatI	WGTACW	3 cut(s)	83, 546, 1149
TfiI	GAWTC	3 cut(s)	271, 470, 680
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	4 cut(s)	153, 229, 232, 786
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	5 cut(s)	108, 299, 604, 632, 1232
TspRI	CASTG	1 cut(s)	381
Tth111I	GACNNNGTC	1 cut(s)	1097
Van91I	CCANNNNNTGG	3 cut(s)	871, 1049, 1231
XapI	RAATTY	6 cut(s)	202, 330, 611, 850, 868, 878
XceI	RCATGY	3 cut(s)	160, 1040, 1197
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	561, 783, 1097
ZrmI	AGTACT	2 cut(s)	85, 548
Zsp2I	ATGCAT	2 cut(s)	949, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.