FvH4_5g30190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005348
Physical Location & Seq
Forward (+)
21092890 .. 21094836
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30190.t2

Sequence Viewer

Length: 348 bp
ATGGAGGGTAAGAAGAAGGGGTACGCGTGGGCGGTCTCGGCCGGGCTAAATGCAGCTCTGGCTGCCGTTTCGGCTAAGCTCATAACTCCTCAGATTTTGCGGTATGGAATGGTGGTGTTATTCAACGTGACAATGTGGGGGTGCTATGTGAACAGCCTTAAAGCTCTCTCATCTCTACAAGCTACCGCCACGAATTTTGCTGCGAATTTCCTCTCTTCTGGTTTAGCTGGATACTTTTTGTTCCAAGAGCCCTTGTCCTTCAAGTGGTTTGCAGGTGCCATGCTCATTGTAGTTGGTTCACTCATACTTAGTAAGTCAAGTATTGAGAAGAAGACGCGAACAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

116

Amino Acids

12.36

Weight (kDa)

9.81

Isoelectric Point (pI)

17.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 2 cut(s) 26, 337
AciI CCGC 3 cut(s) 32, 100, 186
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 193, 205
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 264
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 124, 262
AluBI AGCT 5 cut(s) 56, 79, 164, 182, 227
AluI AGCT 5 cut(s) 56, 79, 164, 182, 227
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 53, 62, 200
ApoI RAATTY 2 cut(s) 193, 205
AsuC2I CCSGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 49, 65, 187
BceAI ACGGC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 263
BfuI GTATCC 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 54, 63, 201
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 55, 64, 202
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 49, 65, 187
Bsh1236I CGCG 2 cut(s) 26, 337
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 252
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 3 cut(s) 32, 100, 186
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 103
BspFNI CGCG 2 cut(s) 26, 337
BspLI GGNNCC 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 75, 90, 308
BstFNI CGCG 2 cut(s) 26, 337
BstMAI GTCTC 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 2 cut(s) 26, 337
BstV1I GCAGC 3 cut(s) 49, 65, 187
BstV2I GAAGAC 1 cut(s) 338
BstZI CGGCCG 1 cut(s) 39
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 41
BveI ACCTGC 1 cut(s) 263
CseI GACGC 1 cut(s) 343
Csp6I GTAC 1 cut(s) 22
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 1 cut(s) 280
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 75, 90, 308
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 40
Eco52I CGGCCG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 283
FaiI YATR 5 cut(s) 83, 105, 147, 281, 305
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 54, 63, 201
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 54, 63, 201
GluI GCNGC 3 cut(s) 54, 63, 201
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 283
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 151, 299
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 151, 299
HpyAV CCTTC 2 cut(s) 10, 268
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 53, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
HpyF3I CTNAG 3 cut(s) 75, 90, 308
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 283
LpnPI CCDG 5 cut(s) 44, 55, 204, 213, 258
Lsp1109I GCAGC 3 cut(s) 49, 65, 187
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 4 cut(s) 25, 207, 340, 343
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 193, 205
MluI ACGCGT 1 cut(s) 24
MnlI CCTC 2 cut(s) 99, 221
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 26, 337
MwoI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
NciI CCSGG 1 cut(s) 43
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 55, 64, 202
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 54, 63, 201
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 58, 81, 129, 166, 184, 229, 277
Sse9I AATT 2 cut(s) 193, 205
SsiI CCGC 3 cut(s) 32, 100, 186
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 129
TasI AATT 2 cut(s) 193, 205
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 53, 62, 200
Tsp45I GTSAC 1 cut(s) 127
XapI RAATTY 2 cut(s) 193, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.