Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005348

Physical Location & Seq

Genomic Coordinates Reverse (-)

39632140 .. 39634745

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGATGGAGGGTAAGAAGAAGGGCTACGCTTGGGCGGTCTCCGCCGGACTAAACGCAGCCCTGGCTGCTGTTTCGGCGAAGCTGATAACTCCTCAGGTGATTTTCTCACATCCAGTTCATGAATTCACGATTTTCGCGTCTGAAAATCCTCTACTTGATTTTGATTTTGTAATTGAGTTACCTGATCAGATTTTGCGGTATGGAATGGTGGTTTTATTCAACGTGACAATGTGGGGGTGTTATGTGAACAGCCTTAAGGCTCTTTCATCTCTACAAGCCACTGTTACAAATTTTGCTGCGAATTTCCTCTCTTCTGGTTTAGCTGGCTACTTCTTGTTCCAAGAGCCCTTGTCCTTCAAGTGGTTTGCAGGTGCCATGCTCATTGTAGTTGGTTCACTCATACTTAGTGAGTCAAGTATTGAGAAGAAGACACGAACGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

148

Amino Acids

16.25

Weight (kDa)

5.64

Isoelectric Point (pI)

23.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30845
fragaria_vesca	FvH4_5g30190 FvH4_5g30190
malus_domestica	MD08G1016500.v1.1 MD13G1087600.v1.1 MD15G1015600.v1.1
prunus_persica	Prupe.1G369500_v2.0.a1 Prupe.1G369500_v2.0.a1
pyrus_communis	pycom08g01430 pycom15g01330
rosa_chinensis	RchiOBHm_Chr6g0272121 RchiOBHm_Chr6g0302381
rosa_laevigata	RLG00000011174 RLG00000013700
rosa_multiflora	Rmu_co8096130.1_g000001 Rmu_sc0013301.1_g000006
rosa_roxburghii	Rroxscaffold_7G00165810 Rroxscaffold_7G00196590
rosa_rugosa	Rorug06G0065800 Rorug06G0313800
rosa_samantha	Rh6AG183000 Rh6AG426900 Rh6BG184100 Rh6BG475800 Rh6CG184200 Rh6DG175900
rosa_wichuraiana	Rw0G009150 Rw6G015750 Rw6G036930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	374
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	38, 45, 199
AcsI	RAATTY	3 cut(s)	125, 292, 304
AfiI	CCNNNNNNNGG	1 cut(s)	363
AflII	CTTAAG	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	223, 361
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	85, 326
AluI	AGCT	2 cut(s)	85, 326
Alw26I	GTCTC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	59, 68, 299
ApoI	RAATTY	3 cut(s)	125, 292, 304
AsuHPI	GGTGA	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	55, 71, 286
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	3 cut(s)	60, 69, 300
BlsI	GCNGC	3 cut(s)	61, 70, 301
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	55, 71, 286
Bsh1236I	CGCG	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	3 cut(s)	38, 45, 199
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	319
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	96, 407
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 65, 68, 77
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	55, 71, 286
BstV2I	GAAGAC	1 cut(s)	437
Bsu36I	CCTNAGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	121
CseI	GACGC	1 cut(s)	129
CviAII	CATG	2 cut(s)	122, 379
DdeI	CTNAG	2 cut(s)	96, 407
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	2 cut(s)	125, 382
FaiI	YATR	5 cut(s)	123, 204, 246, 380, 404
FatI	CATG	2 cut(s)	121, 378
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	60, 69, 300
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	60, 69, 300
GluI	GCNGC	3 cut(s)	60, 69, 300
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	125, 382
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	250, 398
Hpy188I	TCNGA	2 cut(s)	145, 192
Hpy188III	TCNNGA	2 cut(s)	122, 130
Hpy8I	GTNNAC	2 cut(s)	250, 398
HpyAV	CCTTC	2 cut(s)	16, 367
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 65, 68, 77
HpyF3I	CTNAG	2 cut(s)	96, 407
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	125, 382
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	9 cut(s)	50, 61, 77, 83, 129, 198, 303, 312, 357
Lsp1109I	GCAGC	3 cut(s)	55, 71, 286
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	180, 226, 286
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	31, 306, 439, 442
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	125, 174, 292, 304
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	4, 105, 162, 320
MseI	TTAA	1 cut(s)	258
MspCI	CTTAAG	1 cut(s)	257
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	44, 65, 68, 77
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	125, 382
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	61, 70, 301
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	3 cut(s)	60, 69, 300
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	87, 102, 187, 228, 328, 376
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	125, 174, 292, 304
SsiI	CCGC	3 cut(s)	38, 45, 199
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	228
TasI	AATT	4 cut(s)	125, 174, 292, 304
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	59, 68, 299
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	110, 138, 258
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	257
XapI	RAATTY	3 cut(s)	125, 292, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.