Rmu_sc0013301.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013301.1
OG0005348
Physical Location & Seq
Forward (+)
27238 .. 28502
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013301.1_g000006.1.cds

Sequence Viewer

Length: 354 bp
atggagggtaagactaagaagaagggctacgcttgggcggtctccgccggactaaacgcagccctggctgccgtttcggcgaagctgataactcctcagattttgcggtatggaatggtggttttattcaacgtgacaatgtgggggtgttatgtgaacagccttaaggctctttcatctctacaagccacggttacaaatttcgctgcgaatttcctctcttctggtttagctggttacttcttgttccaagagcccttgtcctttaagtggtttgcaggtgccatgctcattgtagttggttcactcgtacttagtaagtcaagtattgagaagaagacacgaacggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

117

Amino Acids

12.61

Weight (kDa)

9.89

Isoelectric Point (pI)

14.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 3 cut(s) 38, 45, 106
AcsI RAATTY 2 cut(s) 199, 211
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 85, 233
AluI AGCT 2 cut(s) 85, 233
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 59, 68, 206
ApoI RAATTY 2 cut(s) 199, 211
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 3 cut(s) 55, 71, 193
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 3 cut(s) 60, 69, 207
BlsI GCNGC 3 cut(s) 61, 70, 208
Bme1390I CCNGG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 63, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 63, 189
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 55, 71, 193
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 258
BspACI CCGC 3 cut(s) 38, 45, 106
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 63, 189
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 226
BstAFI CTTAAG 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 15, 96, 314
BstDSI CCRYGG 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 44, 65, 68, 77
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 55, 71, 193
BstV2I GAAGAC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 189
BveI ACCTGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 286
CviJI RGCY 9 cut(s) 27, 62, 68, 85, 162, 170, 188, 233, 256
CviKI_1 RGCY 9 cut(s) 27, 62, 68, 85, 162, 170, 188, 233, 256
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 3 cut(s) 15, 96, 314
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 1 cut(s) 289
FaiI YATR 3 cut(s) 111, 153, 287
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 60, 69, 207
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 60, 69, 207
GluI GCNGC 3 cut(s) 60, 69, 207
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 289
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 157, 305
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 2 cut(s) 157, 305
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 65, 68, 77
HpyF3I CTNAG 3 cut(s) 15, 96, 314
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 289
LpnPI CCDG 6 cut(s) 50, 61, 77, 210, 219, 264
Lsp1109I GCAGC 3 cut(s) 55, 71, 193
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 133, 193, 236
MboII GAAGA 4 cut(s) 31, 213, 346, 349
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 199, 211
MnlI CCTC 2 cut(s) 105, 227
MseI TTAA 2 cut(s) 165, 267
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 44, 65, 68, 77
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 269
PkrI GCNGC 3 cut(s) 61, 70, 208
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 283
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 165, 267
SatI GCNGC 3 cut(s) 60, 69, 207
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 258
SetI ASST 4 cut(s) 87, 135, 235, 283
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 199, 211
SsiI CCGC 3 cut(s) 38, 45, 106
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 135
TasI AATT 2 cut(s) 199, 211
Tru1I TTAA 2 cut(s) 165, 267
Tru9I TTAA 2 cut(s) 165, 267
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 59, 68, 206
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 165
Vha464I CTTAAG 1 cut(s) 164
XapI RAATTY 2 cut(s) 199, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.