Rh6AG183000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005348
Physical Location & Seq
Forward (+)
32022237 .. 32023490
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG183000.1

Sequence Viewer

Length: 360 bp
ATGGAGATGGAGGGTAAGACTAAGAAGAAGGGCTATGCTTGGGCGGTCTCCGCCGGACTAAACGCAGCCCTGGCAGCCGTTTCGGCGAAGCTGATAACTCCTCAGATTTTGCGGTATGGAATGGTGGTTTTATTCAACGTGACAATGTGGGGGTGTTATGTGAACAGCCTTAAGGCTCTTTCATCTCTACAAGCCACGGTTACAAATTTCGCTGCGAATTTCCTCTCTTCTGGTTTAGCTGGTTACTTCTTGTTCCAAGAGCCCTTGTCCTTTAAGTGGTTTGCAGGTGCCATGCTCATTGTAGTTGGTTCACTCGTACTTAGTAAGTCAAGTATTGAGAAGAAGACACGAACGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

119

Amino Acids

12.87

Weight (kDa)

9.76

Isoelectric Point (pI)

14.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 287
AciI CCGC 3 cut(s) 44, 51, 112
AcsI RAATTY 2 cut(s) 205, 217
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 276
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 91, 239
AluI AGCT 2 cut(s) 91, 239
Alw26I GTCTC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 65, 74, 212
ApoI RAATTY 2 cut(s) 205, 217
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 3 cut(s) 77, 86, 199
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 52
BfrI CTTAAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 66, 75, 213
BlsI GCNGC 3 cut(s) 67, 76, 214
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 69, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 69, 195
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 77, 86, 199
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 52
Bso31I GGTCTC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 264
BspACI CCGC 3 cut(s) 44, 51, 112
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 287
BspTI CTTAAG 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 69, 195
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 21, 102, 320
BstDSI CCRYGG 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 52
BstMWI GCNNNNNNNGC 4 cut(s) 50, 71, 74, 83
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 77, 86, 199
BstV2I GAAGAC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 292
CviJI RGCY 9 cut(s) 33, 68, 77, 91, 168, 176, 194, 239, 262
CviKI_1 RGCY 9 cut(s) 33, 68, 77, 91, 168, 176, 194, 239, 262
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 21, 102, 320
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 1 cut(s) 295
FaiI YATR 4 cut(s) 36, 117, 159, 293
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 66, 75, 213
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 66, 75, 213
GluI GCNGC 3 cut(s) 66, 75, 213
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 295
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 163, 311
Hpy188I TCNGA 1 cut(s) 105
Hpy8I GTNNAC 2 cut(s) 163, 311
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 71, 74, 83
HpyF3I CTNAG 3 cut(s) 21, 102, 320
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 295
LpnPI CCDG 6 cut(s) 56, 67, 83, 216, 225, 270
Lsp1109I GCAGC 3 cut(s) 77, 86, 199
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 139, 199, 242
MboII GAAGA 4 cut(s) 37, 219, 352, 355
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 2 cut(s) 205, 217
MnlI CCTC 3 cut(s) 4, 111, 233
MseI TTAA 2 cut(s) 171, 273
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 50, 71, 74, 83
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 139
PaqCI CACCTGC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 67, 76, 214
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 289
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 171, 273
SatI GCNGC 3 cut(s) 66, 75, 213
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 264
SetI ASST 4 cut(s) 93, 141, 241, 289
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 205, 217
SsiI CCGC 3 cut(s) 44, 51, 112
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 141
TasI AATT 2 cut(s) 205, 217
Tru1I TTAA 2 cut(s) 171, 273
Tru9I TTAA 2 cut(s) 171, 273
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 3 cut(s) 65, 74, 212
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 171
Vha464I CTTAAG 1 cut(s) 170
XapI RAATTY 2 cut(s) 205, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.