RchiOBHm_Chr6g0302381

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
62537758 .. 62539834
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27164

Sequence Viewer

Length: 348 bp
ATGGAGGGTAAGAAGAAAGGCTACGCTTGGGCGGTCTCCGCCGGACTAAACGCAGCTCTGGCTGCCGTTTCGGCGAAGCTGATTACTCCTCAGATTTTGAGGTATGGAATGGTGGTTTTATTCAACGTGACAATGTGGGGGTGTTATGTGAACAGCCTTAAAGCTCTTTCATCTCTACAAGCTACGGTTACTAATTTTGCTGCGAATTTCCTCTCTTCTGGTTTAGCTGGTTACTTCTTGTTCCAAGAGCCCTTGTCCTTGAAGCGGTTTGTAGGTGCCATGCTCATTGTAGTTGGTTCACTCGTACTTAGTAAGTCAAGTATTGAGAAGAAGACACGAACGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.34

Weight (kDa)

9.94

Isoelectric Point (pI)

17.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 275
AciI CCGC 3 cut(s) 32, 39, 265
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 124, 262
AluBI AGCT 5 cut(s) 56, 79, 164, 182, 227
AluI AGCT 5 cut(s) 56, 79, 164, 182, 227
Alw26I GTCTC 1 cut(s) 40
ApeKI GCWGC 3 cut(s) 53, 62, 200
ApoI RAATTY 1 cut(s) 205
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 49, 65, 187
BceAI ACGGC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 40
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 54, 63, 201
BlsI GCNGC 3 cut(s) 55, 64, 202
BmiI GGNNCC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 49, 65, 187
BshNI GGYRCC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 252
BspACI CCGC 3 cut(s) 32, 39, 265
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 220
BstDEI CTNAG 2 cut(s) 90, 308
BstMAI GTCTC 1 cut(s) 40
BstMWI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
BstV1I GCAGC 3 cut(s) 49, 65, 187
BstV2I GAAGAC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 280
CviJI RGCY 9 cut(s) 21, 56, 62, 79, 156, 164, 182, 227, 250
CviKI_1 RGCY 9 cut(s) 21, 56, 62, 79, 156, 164, 182, 227, 250
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 90, 308
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 283
FaiI YATR 3 cut(s) 105, 147, 281
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 54, 63, 201
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 3 cut(s) 54, 63, 201
GluI GCNGC 3 cut(s) 54, 63, 201
HapII CCGG 1 cut(s) 42
Hin1II CATG 1 cut(s) 283
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 151, 299
Hpy188I TCNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 151, 299
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
HpyF3I CTNAG 2 cut(s) 90, 308
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 283
LpnPI CCDG 4 cut(s) 44, 55, 204, 213
Lsp1109I GCAGC 3 cut(s) 49, 65, 187
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 127, 187, 230
MboII GAAGA 4 cut(s) 25, 207, 340, 343
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 193, 205
MnlI CCTC 3 cut(s) 93, 99, 221
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 4 cut(s) 38, 59, 62, 71
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 55, 64, 202
PspN4I GGNNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 54, 63, 201
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 58, 81, 104, 129, 166, 184, 229, 277
Sse9I AATT 2 cut(s) 193, 205
SsiI CCGC 3 cut(s) 32, 39, 265
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 129
TasI AATT 2 cut(s) 193, 205
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 53, 62, 200
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.