Rorug06G0065800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005348
Physical Location & Seq
Forward (+)
8703740 .. 8711086
7347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0065800.1

Sequence Viewer

Length: 249 bp
ATGTTGAAAGCTCTGAGAATCTACGCGGAGGTTCTGAGATTGGTGCGGCGGTTGCCCAAGGACTCTCGGCCTTACTACGCCAAGTACGTTCGGGAGAATTTCGTCAATTACAGAGAGGTCGAGGTCTCCGATGACCAAGCTCTCCACGACCTCTTCAATAGGGCTTACATTCATTCCCTCTGGGTCCTCAACAAGTACTCTGTTGATGAATCCGCCGCCGATAAGTTGAAGAAGATCTGCAGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

82

Amino Acids

9.75

Weight (kDa)

9.3

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 3 - 56 1.3e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 6 cut(s) 26, 46, 49, 213, 216, 243
AcsI RAATTY 1 cut(s) 97
AfaI GTAC 2 cut(s) 86, 197
AgsI TTSAA 3 cut(s) 7, 157, 229
AluBI AGCT 2 cut(s) 11, 140
AluI AGCT 2 cut(s) 11, 140
Alw26I GTCTC 1 cut(s) 130
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 238
BglII AGATCT 1 cut(s) 234
BisI GCNGC 3 cut(s) 47, 216, 241
BlsI GCNGC 3 cut(s) 48, 217, 242
BmcAI AGTACT 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 5, 26
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 70
Bso31I GGTCTC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 6 cut(s) 26, 46, 49, 213, 216, 243
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 6, 27
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 185
BspMAI CTGCAG 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 14, 35
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 238
BstUI CGCG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 85, 196
CviJI RGCY 4 cut(s) 11, 70, 140, 164
CviKI_1 RGCY 4 cut(s) 11, 70, 140, 164
CviQI GTAC 2 cut(s) 85, 196
DdeI CTNAG 2 cut(s) 14, 35
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 47, 216, 241
Fsp4HI GCNGC 3 cut(s) 47, 216, 241
GluI GCNGC 3 cut(s) 47, 216, 241
HaeIII GGCC 1 cut(s) 70
HinfI GANTC 3 cut(s) 18, 62, 209
Hpy188I TCNGA 3 cut(s) 15, 36, 130
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 14, 35
HpySE526I ACGT 1 cut(s) 87
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 1 cut(s) 166
MaeII ACGT 1 cut(s) 87
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 3 cut(s) 145, 241, 244
MflI RGATCY 1 cut(s) 234
MluCI AATT 2 cut(s) 97, 106
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 22, 109, 115, 161, 188, 197
MspA1I CMGCKG 1 cut(s) 243
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 185
NmeAIII GCCGAG 1 cut(s) 46
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 126
PfeI GAWTC 2 cut(s) 18, 209
PkrI GCNGC 3 cut(s) 48, 217, 242
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
PstI CTGCAG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 86, 197
RsaNI GTAC 2 cut(s) 85, 196
SatI GCNGC 3 cut(s) 47, 216, 241
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 56
SetI ASST 7 cut(s) 13, 33, 90, 120, 126, 142, 153
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 184
Sse9I AATT 2 cut(s) 97, 106
SsiI CCGC 6 cut(s) 26, 46, 49, 213, 216, 243
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 97, 106
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 49, 218
TfiI GAWTC 2 cut(s) 18, 209
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 161, 222
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.