MD15G1015600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0005348
Physical Location & Seq
Reverse (-)
899422 .. 901263
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1015600.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGAGGCTGGCAAGAAGAAGGGCTACGCGTGGGCAGTTTCAGCCGGACTCTGTGCCGCTTCCGCCGCCCTTTCGGCGAAGATAATCAGTCCTCAGATTGTGAAGTACGGTTTCGTGGTATTATTCATCGTGGCAATGTGGGGTTGTTTTGTGCAAAGCTTAAAGAATCTCTCGGCTCTGCAAGCTACAGCGACGAACTTTGCTACCAACTTCCTCACTTCTGGTCTGGCTGGATACTTTTTGTTTCAAGAACCCTTATCCGAGAAGTGGTTTGCAGGCGCCCTGCTCATTGTAGTTGGTGCACTCATACTTGGTATGTCAAGTATTGGGAAGAAGGCTCGTACGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

117

Amino Acids

12.23

Weight (kDa)

9.6

Isoelectric Point (pI)

18.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 57, 63, 66
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 107, 343
AfiI CCNNNNNNNGG 1 cut(s) 267
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 2 cut(s) 159, 185
AluI AGCT 2 cut(s) 159, 185
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
ApaLI GTGCAC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 278
BarI GAAGNNNNNNTAC 2 cut(s) 8, 40
Bbv12I GWGCWC 1 cut(s) 304
BciVI GTATCC 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 282
BfuI GTATCC 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 57, 66
BlsI GCNGC 2 cut(s) 58, 67
BmiI GGNNCC 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 45
BsiWI CGTACG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 304
BspACI CCGC 3 cut(s) 57, 63, 66
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 10, 183, 277
BstDEI CTNAG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstMWI GCNNNNNNNGC 5 cut(s) 41, 62, 65, 74, 182
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 1 cut(s) 29
BsuI GTATCC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 10, 183, 277
CfoI GCGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 106, 342
CviJI RGCY 8 cut(s) 8, 24, 44, 159, 176, 185, 230, 338
CviKI_1 RGCY 8 cut(s) 8, 24, 44, 159, 176, 185, 230, 338
CviQI GTAC 2 cut(s) 106, 342
DdeI CTNAG 1 cut(s) 93
DinI GGCGCC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 52
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
FaiI YATR 2 cut(s) 308, 317
Fnu4HI GCNGC 2 cut(s) 57, 66
Fsp4HI GCNGC 2 cut(s) 57, 66
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 57, 66
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 2 cut(s) 48, 166
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 2 cut(s) 96, 262
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 13, 328
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 154, 181, 275, 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 62, 65, 74, 182
HpyF3I CTNAG 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 279
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
LpnPI CCDG 6 cut(s) 58, 207, 212, 216, 261, 296
MboII GAAGA 3 cut(s) 28, 91, 343
MhlI GDGCHC 1 cut(s) 304
MluI ACGCGT 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 2 cut(s) 102, 224
MseI TTAA 1 cut(s) 161
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 5 cut(s) 41, 62, 65, 74, 182
NarI GGCGCC 1 cut(s) 279
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 166
Pfl23II CGTACG 1 cut(s) 341
PkrI GCNGC 2 cut(s) 58, 67
PleI GAGTC 1 cut(s) 42
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 42
PspLI CGTACG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 280
RsaI GTAC 2 cut(s) 107, 343
RsaNI GTAC 2 cut(s) 106, 342
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 57, 66
SchI GAGTC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 304
SetI ASST 2 cut(s) 161, 187
SfcI CTRYAG 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 280
SsiI CCGC 3 cut(s) 57, 63, 66
SspDI GGCGCC 1 cut(s) 278
TaaI ACNGT 1 cut(s) 110
TauI GCSGC 2 cut(s) 59, 68
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 115
VneI GTGCAC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.