cation-transporting ATPase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23630 |
| fragaria_vesca | FvH4_5g30560 FvH4_5g30560 FvH4_5g30560 FvH4_5g30560 |
| malus_domestica | MD08G1222500.v1.1 MD15G1415900.v1.1 |
| prunus_persica | Prupe.1G560300_v2.0.a1 Prupe.1G560300_v2.0.a1 |
| pyrus_communis | pycom08g19340 pycom15g36910 |
| rosa_chinensis | RchiOBHm_Chr7g0225451 |
| rosa_laevigata | RLG00000001818 RLG00000001819 |
| rosa_multiflora | Rmu_co8033688.1_g000001 Rmu_sc0000259.1_g000014 Rmu_sc0000259.1_g000015 |
| rosa_roxburghii | Rroxscaffold_3G00233810 |
| rosa_rugosa | Rorug07G0229400 |
| rosa_samantha | Rh7AG373800 Rh7BG364200 Rh7CG392100 Rh7DG375400 |
| rosa_wichuraiana | Rw7G031670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1325 |
| AarI | CACCTGC | 1 cut(s) | 2665 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2515 |
| Acc16I | TGCGCA | 1 cut(s) | 1154 |
| Acc36I | ACCTGC | 1 cut(s) | 2665 |
| AccB1I | GGYRCC | 4 cut(s) | 1817, 1852, 2494, 3382 |
| AccBSI | CCGCTC | 1 cut(s) | 1652 |
| AccI | GTMKAC | 5 cut(s) | 219, 947, 1432, 1563, 1840 |
| AccII | CGCG | 2 cut(s) | 2738, 2981 |
| AccIII | TCCGGA | 1 cut(s) | 1060 |
| AclWI | GGATC | 6 cut(s) | 1271, 1284, 1628, 1906, 2061, 2074 |
| AcoI | YGGCCR | 3 cut(s) | 490, 2520, 2557 |
| AcsI | RAATTY | 5 cut(s) | 296, 1581, 1883, 2871, 3358 |
| AcuI | CTGAAG | 3 cut(s) | 522, 2999, 3168 |
| AcyI | GRCGYC | 1 cut(s) | 150 |
| AdeI | CACNNNGTG | 1 cut(s) | 1403 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 457, 1067, 1094, 1176, 1442, 1706, 3379, 3487 |
| AflII | CTTAAG | 1 cut(s) | 3374 |
| AflIII | ACRYGT | 1 cut(s) | 745 |
| AjiI | CACGTC | 2 cut(s) | 746, 1403 |
| AjnI | CCWGG | 5 cut(s) | 264, 2889, 3225, 3481, 3497 |
| AleI | CACNNNNGTG | 1 cut(s) | 1850 |
| Alw26I | GTCTC | 6 cut(s) | 638, 1005, 1732, 2255, 2626, 3521 |
| AlwI | GGATC | 6 cut(s) | 1271, 1284, 1628, 1906, 2061, 2074 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2045, 2650, 3170 |
| Ama87I | CYCGRG | 2 cut(s) | 824, 2366 |
| Aor13HI | TCCGGA | 1 cut(s) | 1060 |
| ApeKI | GCWGC | 5 cut(s) | 518, 598, 1051, 1348, 3521 |
| ApoI | RAATTY | 5 cut(s) | 296, 1581, 1883, 2871, 3358 |
| AseI | ATTAAT | 3 cut(s) | 578, 2159, 2420 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 930, 1425, 1830 |
| AspLEI | GCGC | 3 cut(s) | 75, 181, 1155 |
| AspS9I | GGNCC | 5 cut(s) | 857, 1267, 2168, 2464, 3490 |
| AsuC2I | CCSGG | 3 cut(s) | 345, 825, 826 |
| AsuHPI | GGTGA | 9 cut(s) | 1643, 1946, 2095, 2108, 2196, 2769, 2860, 2954, 3223 |
| AsuII | TTCGAA | 1 cut(s) | 1128 |
| AsuNHI | GCTAGC | 1 cut(s) | 802 |
| AvaI | CYCGRG | 2 cut(s) | 824, 2366 |
| AvaII | GGWCC | 2 cut(s) | 857, 3490 |
| BaeGI | GKGCMC | 2 cut(s) | 1822, 3387 |
| BalI | TGGCCA | 1 cut(s) | 492 |
| BamHI | GGATCC | 2 cut(s) | 1276, 2066 |
| BanI | GGYRCC | 4 cut(s) | 1817, 1852, 2494, 3382 |
| BauI | CACGAG | 1 cut(s) | 1902 |
| BbsI | GAAGAC | 2 cut(s) | 731, 3058 |
| BbvCI | CCTCAGC | 1 cut(s) | 987 |
| BbvI | GCAGC | 5 cut(s) | 505, 610, 1063, 1335, 3508 |
| BccI | CCATC | 5 cut(s) | 1864, 2426, 2723, 2921, 3502 |
| BceAI | ACGGC | 5 cut(s) | 586, 1679, 3023, 3050, 3302 |
| BciT130I | CCWGG | 5 cut(s) | 266, 2891, 3227, 3483, 3499 |
| BclI | TGATCA | 1 cut(s) | 2098 |
| BcnI | CCSGG | 3 cut(s) | 345, 825, 826 |
| BcoDI | GTCTC | 6 cut(s) | 638, 1005, 1732, 2255, 2626, 3521 |
| BfaI | CTAG | 7 cut(s) | 132, 803, 902, 1284, 2876, 2939, 3080 |
| BfmI | CTRYAG | 1 cut(s) | 120 |
| BfoI | RGCGCY | 2 cut(s) | 76, 182 |
| BfrI | CTTAAG | 1 cut(s) | 3374 |
| BfuAI | ACCTGC | 1 cut(s) | 2665 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2771 |
| BlpI | GCTNAGC | 1 cut(s) | 1005 |
| BmcAI | AGTACT | 2 cut(s) | 487, 2842 |
| Bme1390I | CCNGG | 8 cut(s) | 266, 345, 825, 826, 2891, 3227, 3483, 3499 |
| Bme18I | GGWCC | 2 cut(s) | 857, 3490 |
| BmeT110I | CYCGRG | 2 cut(s) | 824, 2366 |
| BmgBI | CACGTC | 2 cut(s) | 746, 1403 |
| BmgT120I | GGNCC | 5 cut(s) | 857, 1267, 2168, 2464, 3490 |
| BmiI | GGNNCC | 9 cut(s) | 1278, 1819, 1854, 2068, 2437, 2496, 2742, 3384, 3492 |
| BmrFI | CCNGG | 8 cut(s) | 266, 345, 825, 826, 2891, 3227, 3483, 3499 |
| BmrI | ACTGGG | 1 cut(s) | 1131 |
| BmtI | GCTAGC | 1 cut(s) | 806 |
| BmuI | ACTGGG | 1 cut(s) | 1131 |
| BpiI | GAAGAC | 2 cut(s) | 731, 3058 |
| BpmI | CTGGAG | 3 cut(s) | 885, 2484, 3209 |
| Bpu10I | CCTNAGC | 2 cut(s) | 987, 1344 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1005 |
| Bpu14I | TTCGAA | 1 cut(s) | 1128 |
| BpuEI | CTTGAG | 1 cut(s) | 1292 |
| BpuMI | CCSGG | 3 cut(s) | 345, 825, 826 |
| Bsa29I | ATCGAT | 2 cut(s) | 781, 1364 |
| BsaHI | GRCGYC | 1 cut(s) | 150 |
| BsaI | GGTCTC | 1 cut(s) | 638 |
| BsaJI | CCNNGG | 8 cut(s) | 246, 456, 493, 824, 825, 1353, 2769, 3481 |
| BsaWI | WCCGGW | 3 cut(s) | 302, 1060, 1546 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 12, 42, 983, 1013 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 457, 1067, 1094, 1176, 1442, 1706, 3379, 3487 |
| Bse118I | RCCGGY | 1 cut(s) | 289 |
| Bse1I | ACTGG | 6 cut(s) | 493, 868, 1126, 2098, 2515, 2604 |
| Bse3DI | GCAATG | 2 cut(s) | 1386, 1717 |
| BseAI | TCCGGA | 1 cut(s) | 1060 |
| BseBI | CCWGG | 5 cut(s) | 266, 2891, 3227, 3483, 3499 |
| BseCI | ATCGAT | 2 cut(s) | 781, 1364 |
| BseDI | CCNNGG | 8 cut(s) | 246, 456, 493, 824, 825, 1353, 2769, 3481 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 457, 1067, 1094, 1176, 1442, 1706, 3379, 3487 |
| BseMI | GCAATG | 2 cut(s) | 1386, 1717 |
| BseNI | ACTGG | 6 cut(s) | 493, 868, 1126, 2098, 2515, 2604 |
| BseRI | GAGGAG | 4 cut(s) | 389, 996, 1004, 2735 |
| BseSI | GKGCMC | 2 cut(s) | 1822, 3387 |
| BseXI | GCAGC | 5 cut(s) | 505, 610, 1063, 1335, 3508 |
| BseYI | CCCAGC | 1 cut(s) | 1194 |
| Bsh1236I | CGCG | 2 cut(s) | 2738, 2981 |
| BshNI | GGYRCC | 4 cut(s) | 1817, 1852, 2494, 3382 |
| BshVI | ATCGAT | 2 cut(s) | 781, 1364 |
| BsiHKCI | CYCGRG | 2 cut(s) | 824, 2366 |
| BsiSI | CCGG | 7 cut(s) | 290, 303, 345, 807, 825, 1061, 1547 |
| BslFI | GGGAC | 5 cut(s) | 549, 1051, 1492, 2300, 3476 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 457, 1067, 1094, 1176, 1442, 1706, 3379, 3487 |
| BsmAI | GTCTC | 6 cut(s) | 638, 1005, 1732, 2255, 2626, 3521 |
| BsmBI | CGTCTC | 1 cut(s) | 3521 |
| BsmFI | GGGAC | 5 cut(s) | 549, 1051, 1492, 2300, 3476 |
| BsmI | GAATGC | 1 cut(s) | 2494 |
| Bso31I | GGTCTC | 1 cut(s) | 638 |
| BsoBI | CYCGRG | 2 cut(s) | 824, 2366 |
| Bsp119I | TTCGAA | 1 cut(s) | 1128 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1822, 3387 |
| Bsp13I | TCCGGA | 1 cut(s) | 1060 |
| Bsp1407I | TGTACA | 3 cut(s) | 235, 1415, 1723 |
| Bsp143I | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1005 |
| Bsp19I | CCATGG | 3 cut(s) | 493, 1353, 2769 |
| BspDI | ATCGAT | 2 cut(s) | 781, 1364 |
| BspEI | TCCGGA | 1 cut(s) | 1060 |
| BspFNI | CGCG | 2 cut(s) | 2738, 2981 |
| BspHI | TCATGA | 2 cut(s) | 972, 2266 |
| BspLI | GGNNCC | 9 cut(s) | 1278, 1819, 1854, 2068, 2437, 2496, 2742, 3384, 3492 |
| BspMI | ACCTGC | 1 cut(s) | 2665 |
| BspOI | GCTAGC | 1 cut(s) | 806 |
| BspPI | GGATC | 6 cut(s) | 1271, 1284, 1628, 1906, 2061, 2074 |
| BspQI | GCTCTTC | 1 cut(s) | 3110 |
| BspT104I | TTCGAA | 1 cut(s) | 1128 |
| BspT107I | GGYRCC | 4 cut(s) | 1817, 1852, 2494, 3382 |
| BspTI | CTTAAG | 1 cut(s) | 3374 |
| BspTNI | GGTCTC | 1 cut(s) | 638 |
| BsrBI | CCGCTC | 1 cut(s) | 1652 |
| BsrDI | GCAATG | 2 cut(s) | 1386, 1717 |
| BsrFI | RCCGGY | 1 cut(s) | 289 |
| BsrGI | TGTACA | 3 cut(s) | 235, 1415, 1723 |
| BsrI | ACTGG | 6 cut(s) | 493, 868, 1126, 2098, 2515, 2604 |
| BssAI | RCCGGY | 1 cut(s) | 289 |
| BssECI | CCNNGG | 8 cut(s) | 246, 456, 493, 824, 825, 1353, 2769, 3481 |
| BssMI | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| BssNAI | GTATAC | 1 cut(s) | 1433 |
| BssNI | GRCGYC | 1 cut(s) | 150 |
| BssSI | CACGAG | 1 cut(s) | 1902 |
| BssT1I | CCWWGG | 5 cut(s) | 246, 456, 493, 1353, 2769 |
| Bst1107I | GTATAC | 1 cut(s) | 1433 |
| Bst2BI | CACGAG | 1 cut(s) | 1902 |
| Bst2UI | CCWGG | 5 cut(s) | 266, 2891, 3227, 3483, 3499 |
| Bst6I | CTCTTC | 5 cut(s) | 1785, 2996, 3018, 3110, 3144 |
| BstACI | GRCGYC | 1 cut(s) | 150 |
| BstAFI | CTTAAG | 1 cut(s) | 3374 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 911, 2360, 2588, 2795, 2804 |
| BstAUI | TGTACA | 3 cut(s) | 235, 1415, 1723 |
| BstBI | TTCGAA | 1 cut(s) | 1128 |
| BstDSI | CCRYGG | 3 cut(s) | 493, 1353, 2769 |
| BstFNI | CGCG | 2 cut(s) | 2738, 2981 |
| BstH2I | RGCGCY | 2 cut(s) | 76, 182 |
| BstHHI | GCGC | 3 cut(s) | 75, 181, 1155 |
| BstKTI | GATC | 8 cut(s) | 817, 851, 1279, 1636, 1901, 2069, 2101, 2272 |
| BstMAI | GTCTC | 6 cut(s) | 638, 1005, 1732, 2255, 2626, 3521 |
| BstMBI | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| BstNI | CCWGG | 5 cut(s) | 266, 2891, 3227, 3483, 3499 |
| BstNSI | RCATGY | 4 cut(s) | 895, 2798, 3005, 3145 |
| BstSCI | CCNGG | 8 cut(s) | 264, 343, 823, 824, 2889, 3225, 3481, 3497 |
| BstSFI | CTRYAG | 1 cut(s) | 120 |
| BstSLI | GKGCMC | 2 cut(s) | 1822, 3387 |
| BstUI | CGCG | 2 cut(s) | 2738, 2981 |
| BstV1I | GCAGC | 5 cut(s) | 505, 610, 1063, 1335, 3508 |
| BstV2I | GAAGAC | 2 cut(s) | 731, 3058 |
| BstX2I | RGATCY | 3 cut(s) | 1276, 1898, 2066 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1963 |
| BstYI | RGATCY | 3 cut(s) | 1276, 1898, 2066 |
| BstZ17I | GTATAC | 1 cut(s) | 1433 |
| Bsu15I | ATCGAT | 2 cut(s) | 781, 1364 |
| BsuTUI | ATCGAT | 2 cut(s) | 781, 1364 |
| BtgI | CCRYGG | 3 cut(s) | 493, 1353, 2769 |
| BtgZI | GCGATG | 1 cut(s) | 2775 |
| BtrI | CACGTC | 2 cut(s) | 746, 1403 |
| BtsI | GCAGTG | 2 cut(s) | 204, 1242 |
| BtsIMutI | CAGTG | 9 cut(s) | 204, 369, 1242, 1950, 2188, 2409, 2611, 2814, 2968 |
| BveI | ACCTGC | 1 cut(s) | 2665 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2045, 2650, 3170 |
| CciI | TCATGA | 2 cut(s) | 972, 2266 |
| CfoI | GCGC | 3 cut(s) | 75, 181, 1155 |
| Cfr10I | RCCGGY | 1 cut(s) | 289 |
| Cfr13I | GGNCC | 5 cut(s) | 857, 1267, 2168, 2464, 3490 |
| Cfr9I | CCCGGG | 1 cut(s) | 824 |
| ClaI | ATCGAT | 2 cut(s) | 781, 1364 |
| CseI | GACGC | 3 cut(s) | 158, 281, 2636 |
| DpnI | GATC | 8 cut(s) | 816, 850, 1278, 1635, 1900, 2068, 2100, 2271 |
| DpnII | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| DraI | TTTAAA | 2 cut(s) | 480, 1678 |
| DraIII | CACNNNGTG | 1 cut(s) | 1403 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2515 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2515 |
| EaeI | YGGCCR | 3 cut(s) | 490, 2520, 2557 |
| Eam1104I | CTCTTC | 5 cut(s) | 1785, 2996, 3018, 3110, 3144 |
| EarI | CTCTTC | 5 cut(s) | 1785, 2996, 3018, 3110, 3144 |
| Eco130I | CCWWGG | 5 cut(s) | 246, 456, 493, 1353, 2769 |
| Eco147I | AGGCCT | 1 cut(s) | 2880 |
| Eco31I | GGTCTC | 1 cut(s) | 638 |
| Eco32I | GATATC | 2 cut(s) | 966, 2202 |
| Eco47I | GGWCC | 2 cut(s) | 857, 3490 |
| Eco57I | CTGAAG | 3 cut(s) | 522, 2999, 3168 |
| Eco88I | CYCGRG | 2 cut(s) | 824, 2366 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1267, 3490 |
| EcoRII | CCWGG | 5 cut(s) | 264, 2889, 3225, 3481, 3497 |
| EcoRV | GATATC | 2 cut(s) | 966, 2202 |
| EcoT14I | CCWWGG | 5 cut(s) | 246, 456, 493, 1353, 2769 |
| EcoT22I | ATGCAT | 1 cut(s) | 2800 |
| ErhI | CCWWGG | 5 cut(s) | 246, 456, 493, 1353, 2769 |
| Esp3I | CGTCTC | 1 cut(s) | 3521 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 416, 448, 3460, 3492 |
| FaqI | GGGAC | 5 cut(s) | 549, 1051, 1492, 2300, 3476 |
| FauI | CCCGC | 2 cut(s) | 779, 1435 |
| FbaI | TGATCA | 1 cut(s) | 2098 |
| FblI | GTMKAC | 5 cut(s) | 219, 947, 1432, 1563, 1840 |
| FspAI | RTGCGCAY | 1 cut(s) | 1154 |
| FspBI | CTAG | 7 cut(s) | 132, 803, 902, 1284, 2876, 2939, 3080 |
| FspI | TGCGCA | 1 cut(s) | 1154 |
| GlaI | GCGC | 3 cut(s) | 74, 180, 1154 |
| GsaI | CCCAGC | 1 cut(s) | 1198 |
| GsuI | CTGGAG | 3 cut(s) | 885, 2484, 3209 |
| HaeII | RGCGCY | 2 cut(s) | 76, 182 |
| HapII | CCGG | 7 cut(s) | 290, 303, 345, 807, 825, 1061, 1547 |
| HgaI | GACGC | 3 cut(s) | 158, 281, 2636 |
| HhaI | GCGC | 3 cut(s) | 75, 181, 1155 |
| Hin1I | GRCGYC | 1 cut(s) | 150 |
| Hin6I | GCGC | 3 cut(s) | 73, 179, 1153 |
| HinP1I | GCGC | 3 cut(s) | 73, 179, 1153 |
| HincII | GTYRAC | 3 cut(s) | 220, 702, 3124 |
| HindII | GTYRAC | 3 cut(s) | 220, 702, 3124 |
| HindIII | AAGCTT | 7 cut(s) | 338, 440, 1145, 1298, 1960, 2103, 2753 |
| HpaII | CCGG | 7 cut(s) | 290, 303, 345, 807, 825, 1061, 1547 |
| HphI | GGTGA | 9 cut(s) | 1643, 1946, 2095, 2108, 2196, 2769, 2860, 2954, 3223 |
| Hpy188III | TCNNGA | 9 cut(s) | 571, 973, 1061, 1343, 1640, 2267, 2366, 3109, 3533 |
| Hpy99I | CGWCG | 3 cut(s) | 152, 1404, 2213 |
| HpyAV | CCTTC | 5 cut(s) | 19, 418, 1807, 2403, 3274 |
| HpyCH4IV | ACGT | 5 cut(s) | 566, 745, 1402, 1994, 3514 |
| HpySE526I | ACGT | 5 cut(s) | 566, 745, 1402, 1994, 3514 |
| Hsp92I | GRCGYC | 1 cut(s) | 150 |
| HspAI | GCGC | 3 cut(s) | 73, 179, 1153 |
| Kpn2I | TCCGGA | 1 cut(s) | 1060 |
| Ksp22I | TGATCA | 1 cut(s) | 2098 |
| Kzo9I | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| LguI | GCTCTTC | 1 cut(s) | 3110 |
| LmnI | GCTCC | 7 cut(s) | 983, 1671, 2368, 2450, 2746, 2812, 3228 |
| Lsp1109I | GCAGC | 5 cut(s) | 505, 610, 1063, 1335, 3508 |
| MaeI | CTAG | 7 cut(s) | 132, 803, 902, 1284, 2876, 2939, 3080 |
| MaeII | ACGT | 5 cut(s) | 566, 745, 1402, 1994, 3514 |
| MaeIII | GTNAC | 8 cut(s) | 283, 470, 1180, 1934, 2630, 2732, 2848, 3446 |
| MalI | GATC | 8 cut(s) | 816, 850, 1278, 1635, 1900, 2068, 2100, 2271 |
| MbiI | CCGCTC | 1 cut(s) | 1652 |
| MboI | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| MfeI | CAATTG | 4 cut(s) | 226, 719, 840, 2745 |
| MflI | RGATCY | 3 cut(s) | 1276, 1898, 2066 |
| MhlI | GDGCHC | 2 cut(s) | 1822, 3387 |
| MlsI | TGGCCA | 1 cut(s) | 492 |
| MluNI | TGGCCA | 1 cut(s) | 492 |
| MlyI | GAGTC | 7 cut(s) | 707, 721, 953, 1836, 2257, 3161, 3362 |
| MmeI | TCCRAC | 2 cut(s) | 884, 2428 |
| Mox20I | TGGCCA | 1 cut(s) | 492 |
| Mph1103I | ATGCAT | 1 cut(s) | 2800 |
| MroI | TCCGGA | 1 cut(s) | 1060 |
| MroXI | GAANNNNTTC | 3 cut(s) | 930, 1425, 1830 |
| MscI | TGGCCA | 1 cut(s) | 492 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1850, 1943, 2297, 2327, 2422 |
| Msp20I | TGGCCA | 1 cut(s) | 492 |
| MspA1I | CMGCKG | 4 cut(s) | 887, 1194, 1247, 2045 |
| MspCI | CTTAAG | 1 cut(s) | 3374 |
| MspI | CCGG | 7 cut(s) | 290, 303, 345, 807, 825, 1061, 1547 |
| MspR9I | CCNGG | 8 cut(s) | 266, 345, 825, 826, 2891, 3227, 3483, 3499 |
| MunI | CAATTG | 4 cut(s) | 226, 719, 840, 2745 |
| Mva1269I | GAATGC | 1 cut(s) | 2494 |
| MvaI | CCWGG | 5 cut(s) | 266, 2891, 3227, 3483, 3499 |
| MvnI | CGCG | 2 cut(s) | 2738, 2981 |
| NciI | CCSGG | 3 cut(s) | 345, 825, 826 |
| NcoI | CCATGG | 3 cut(s) | 493, 1353, 2769 |
| NdeII | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| NheI | GCTAGC | 1 cut(s) | 802 |
| NlaIV | GGNNCC | 9 cut(s) | 1278, 1819, 1854, 2068, 2437, 2496, 2742, 3384, 3492 |
| NmuCI | GTSAC | 4 cut(s) | 283, 1934, 2732, 2848 |
| NsbI | TGCGCA | 1 cut(s) | 1154 |
| NsiI | ATGCAT | 1 cut(s) | 2800 |
| NspI | RCATGY | 4 cut(s) | 895, 2798, 3005, 3145 |
| NspV | TTCGAA | 1 cut(s) | 1128 |
| OliI | CACNNNNGTG | 1 cut(s) | 1850 |
| PaeI | GCATGC | 2 cut(s) | 2798, 3005 |
| PagI | TCATGA | 2 cut(s) | 972, 2266 |
| PaqCI | CACCTGC | 1 cut(s) | 2665 |
| PceI | AGGCCT | 1 cut(s) | 2880 |
| PciSI | GCTCTTC | 1 cut(s) | 3110 |
| PctI | GAATGC | 1 cut(s) | 2494 |
| PdmI | GAANNNNTTC | 3 cut(s) | 930, 1425, 1830 |
| PfeI | GAWTC | 5 cut(s) | 541, 1336, 2036, 2224, 2332 |
| PflFI | GACNNNGTC | 1 cut(s) | 3513 |
| PfoI | TCCNGGA | 2 cut(s) | 343, 3497 |
| PleI | GAGTC | 7 cut(s) | 706, 721, 952, 1836, 2257, 3161, 3362 |
| PpsI | GAGTC | 7 cut(s) | 706, 721, 952, 1836, 2257, 3161, 3362 |
| PpuMI | RGGWCCY | 1 cut(s) | 3490 |
| PshBI | ATTAAT | 3 cut(s) | 578, 2159, 2420 |
| PsiI | TTATAA | 1 cut(s) | 1325 |
| Psp5II | RGGWCCY | 1 cut(s) | 3490 |
| Psp6I | CCWGG | 5 cut(s) | 264, 2889, 3225, 3481, 3497 |
| PspFI | CCCAGC | 1 cut(s) | 1194 |
| PspGI | CCWGG | 5 cut(s) | 264, 2889, 3225, 3481, 3497 |
| PspN4I | GGNNCC | 9 cut(s) | 1278, 1819, 1854, 2068, 2437, 2496, 2742, 3384, 3492 |
| PspPI | GGNCC | 5 cut(s) | 857, 1267, 2168, 2464, 3490 |
| PspPPI | RGGWCCY | 1 cut(s) | 3490 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1716, 1748 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2045, 2650, 3170 |
| PsuI | RGATCY | 3 cut(s) | 1276, 1898, 2066 |
| PsyI | GACNNNGTC | 1 cut(s) | 3513 |
| PvuII | CAGCTG | 2 cut(s) | 887, 1194 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1850, 1943, 2297, 2327, 2422 |
| SalI | GTCGAC | 1 cut(s) | 218 |
| SapI | GCTCTTC | 1 cut(s) | 3110 |
| Sau3AI | GATC | 8 cut(s) | 814, 848, 1276, 1633, 1898, 2066, 2098, 2269 |
| Sau96I | GGNCC | 5 cut(s) | 857, 1267, 2168, 2464, 3490 |
| ScaI | AGTACT | 2 cut(s) | 487, 2842 |
| SchI | GAGTC | 7 cut(s) | 707, 721, 953, 1836, 2257, 3161, 3362 |
| ScrFI | CCNGG | 8 cut(s) | 266, 345, 825, 826, 2891, 3227, 3483, 3499 |
| SduI | GDGCHC | 2 cut(s) | 1822, 3387 |
| SfcI | CTRYAG | 1 cut(s) | 120 |
| SfuI | TTCGAA | 1 cut(s) | 1128 |
| SinI | GGWCC | 2 cut(s) | 857, 3490 |
| SmaI | CCCGGG | 1 cut(s) | 826 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1850, 1943, 2297, 2327, 2422 |
| SmlI | CTYRAG | 2 cut(s) | 1271, 3374 |
| SmoI | CTYRAG | 2 cut(s) | 1271, 3374 |
| SphI | GCATGC | 2 cut(s) | 2798, 3005 |
| SseBI | AGGCCT | 1 cut(s) | 2880 |
| SspI | AATATT | 2 cut(s) | 653, 1410 |
| SspMI | CTAG | 7 cut(s) | 132, 803, 902, 1284, 2876, 2939, 3080 |
| StuI | AGGCCT | 1 cut(s) | 2880 |
| StyD4I | CCNGG | 8 cut(s) | 264, 343, 823, 824, 2889, 3225, 3481, 3497 |
| StyI | CCWWGG | 5 cut(s) | 246, 456, 493, 1353, 2769 |
| TaiI | ACGT | 5 cut(s) | 569, 748, 1405, 1997, 3517 |
| TaqI | TCGA | 7 cut(s) | 78, 219, 781, 1128, 1364, 1452, 1641 |
| TaqII | GACCGA | 1 cut(s) | 958 |
| TatI | WGTACW | 6 cut(s) | 235, 485, 1293, 1415, 1723, 2840 |
| TauI | GCSGC | 6 cut(s) | 1247, 1652, 2045, 2562, 2741, 2981 |
| TfiI | GAWTC | 5 cut(s) | 541, 1336, 2036, 2224, 2332 |
| TscAI | CASTG | 9 cut(s) | 211, 369, 1242, 1950, 2188, 2409, 2611, 2821, 2968 |
| TseFI | GTSAC | 4 cut(s) | 283, 1934, 2732, 2848 |
| TseI | GCWGC | 5 cut(s) | 518, 598, 1051, 1348, 3521 |
| Tsp45I | GTSAC | 4 cut(s) | 283, 1934, 2732, 2848 |
| TspGWI | ACGGA | 6 cut(s) | 323, 435, 553, 1550, 2217, 2325 |
| TspMI | CCCGGG | 1 cut(s) | 824 |
| TspRI | CASTG | 9 cut(s) | 211, 369, 1242, 1950, 2188, 2409, 2611, 2821, 2968 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3513 |
| Vha464I | CTTAAG | 1 cut(s) | 3374 |
| VpaK11BI | GGWCC | 2 cut(s) | 857, 3490 |
| VspI | ATTAAT | 3 cut(s) | 578, 2159, 2420 |
| XapI | RAATTY | 5 cut(s) | 296, 1581, 1883, 2871, 3358 |
| XceI | RCATGY | 4 cut(s) | 895, 2798, 3005, 3145 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 463, 1028 |
| XmaI | CCCGGG | 1 cut(s) | 824 |
| XmiI | GTMKAC | 5 cut(s) | 219, 947, 1432, 1563, 1840 |
| XmnI | GAANNNNTTC | 3 cut(s) | 930, 1425, 1830 |
| XspI | CTAG | 7 cut(s) | 132, 803, 902, 1284, 2876, 2939, 3080 |
| ZrmI | AGTACT | 2 cut(s) | 487, 2842 |
| Zsp2I | ATGCAT | 1 cut(s) | 2800 |