RLG00000001819

cation-transporting ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008002
Physical Location & Seq
Reverse (-)
21243401 .. 21244894
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001819

Sequence Viewer

Length: 549 bp
ATGTCGAGGTTCAATGTGGGAGGAAAGGTGGTGGACAAAGTTGATTTGTTGAGGAAGAAAAAGTTGGCGTGGCGCTTCGATGTGTGGCCTTTCGCGATCCTCTATGCTCTGTGGCTCACTACAGTTGTGCCTAGTTTAGACTTTGGCGACGCCATTATTGTTCTCGGTGGTGTAGTGGCGCTTCACATTCTCGTTTGGCTTTTCACTGCTTGGTCCGTCGACTTCAATTGCTTTGTACACTATTCCAAGGTGAACGATTTACACCAGGCTGATGCATGCAAAGTAACGCCAGCTAAATTTTCTGGTTCGAAAGAAGTTGTACCACTCCATTTCCGTAAGCTTCTTGGAGGTTCTTCATCCTCAGTGAATATGGAGGAGATCTACTTTGACTTCAGAAAGCAACGCTACATTTTTTCAAATGAGAAGGAGAACTTTTGCAAGCTTCCATACCCTACCAAGGAAACCATGAGTTACTATTTAAAAAGCACTGGCCATGGCTCTGAAGCTAAAGTTGTTGCTGCTACTGAAAAATGGGGACGGAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase Hydrolase

Protein Analysis

183

Amino Acids

20.76

Weight (kDa)

9.3

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2TM_P5A-ATPase PF23143 20 - 85 1.6e-22 P5A-ATPase, transmembrane helical hairpin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 95
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 2 cut(s) 376, 522
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 237, 321
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 3 cut(s) 13, 226, 417
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 293, 340, 442, 506
AluI AGCT 4 cut(s) 293, 340, 442, 506
AlwI GGATC 1 cut(s) 91
AoxI GGCC 2 cut(s) 86, 490
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 2 cut(s) 75, 181
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 492
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BbvI GCAGC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 2 cut(s) 76, 182
BglII AGATCT 1 cut(s) 378
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 262
Bpu14I TTCGAA 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 3 cut(s) 246, 456, 493
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 493
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 3 cut(s) 246, 456, 493
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 493
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 88, 492
BslI CCNNNNNNNGG 1 cut(s) 457
BsnI GGCC 2 cut(s) 88, 492
Bsp119I TTCGAA 1 cut(s) 308
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 2 cut(s) 96, 378
Bsp19I CCATGG 1 cut(s) 493
Bsp68I TCGCGA 1 cut(s) 95
BspANI GGCC 2 cut(s) 88, 492
BspCNI CTCAG 1 cut(s) 374
BspFNI CGCG 1 cut(s) 95
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 308
BsrGI TGTACA 1 cut(s) 235
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 3 cut(s) 246, 456, 493
BssMI GATC 2 cut(s) 96, 378
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 3 cut(s) 246, 456, 493
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 150
BstAUI TGTACA 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 277, 291, 440
BstDEI CTNAG 1 cut(s) 361
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 2 cut(s) 76, 182
BstHHI GCGC 2 cut(s) 75, 181
BstKTI GATC 2 cut(s) 99, 381
BstMBI GATC 2 cut(s) 96, 378
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 505
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 2 cut(s) 88, 492
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 204, 369, 486
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 277, 291, 440
CfoI GCGC 2 cut(s) 75, 181
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 236, 320
CviAII CATG 3 cut(s) 276, 466, 494
CviQI GTAC 2 cut(s) 236, 320
DdeI CTNAG 1 cut(s) 361
DpnI GATC 2 cut(s) 98, 380
DpnII GATC 2 cut(s) 96, 378
DraI TTTAAA 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 490
Eco130I CCWWGG 3 cut(s) 246, 456, 493
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 376, 522
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 3 cut(s) 246, 456, 493
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 3 cut(s) 246, 456, 493
FaeI CATG 3 cut(s) 279, 469, 497
FaiI YATR 6 cut(s) 105, 277, 371, 448, 467, 495
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FatI CATG 3 cut(s) 275, 465, 493
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 1 cut(s) 132
GlaI GCGC 2 cut(s) 74, 180
GluI GCNGC 1 cut(s) 519
HaeII RGCGCY 2 cut(s) 76, 182
HaeIII GGCC 2 cut(s) 88, 492
HgaI GACGC 1 cut(s) 158
HhaI GCGC 2 cut(s) 75, 181
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 3 cut(s) 279, 469, 497
Hin6I GCGC 2 cut(s) 73, 179
HinP1I GCGC 2 cut(s) 73, 179
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 2 cut(s) 338, 440
HinfI GANTC 1 cut(s) 541
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 4 cut(s) 34, 220, 238, 253
Hpy188I TCNGA 2 cut(s) 395, 502
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 4 cut(s) 34, 220, 238, 253
Hpy99I CGWCG 2 cut(s) 152, 221
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 275, 279, 438
HpyF3I CTNAG 1 cut(s) 361
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 3 cut(s) 279, 469, 497
HspAI GCGC 2 cut(s) 73, 179
Kzo9I GATC 2 cut(s) 96, 378
LpnPI CCDG 5 cut(s) 251, 278, 288, 303, 474
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 283, 470
MalI GATC 2 cut(s) 98, 380
MboI GATC 2 cut(s) 96, 378
MboII GAAGA 2 cut(s) 67, 345
MfeI CAATTG 1 cut(s) 226
MflI RGATCY 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 2 cut(s) 226, 296
MluNI TGGCCA 1 cut(s) 492
MnlI CCTC 6 cut(s) 14, 45, 110, 341, 367, 370
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 277
MscI TGGCCA 1 cut(s) 492
MseI TTAA 1 cut(s) 479
Msp20I TGGCCA 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 493
NdeII GATC 2 cut(s) 96, 378
NlaIII CATG 3 cut(s) 279, 469, 497
NruI TCGCGA 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 308
PaeI GCATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 378
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 2 cut(s) 237, 321
RsaNI GTAC 2 cut(s) 236, 320
SalI GTCGAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 2 cut(s) 96, 378
Sau96I GGNCC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 266
SetI ASST 8 cut(s) 11, 30, 252, 295, 342, 352, 444, 508
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 1 cut(s) 213
SphI GCATGC 1 cut(s) 279
Sse9I AATT 2 cut(s) 226, 296
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 3 cut(s) 246, 456, 493
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 4 cut(s) 5, 78, 219, 308
TasI AATT 2 cut(s) 226, 296
TatI WGTACW 1 cut(s) 235
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TscAI CASTG 3 cut(s) 211, 369, 493
TseI GCWGC 1 cut(s) 518
TspDTI ATGAA 1 cut(s) 345
TspGWI ACGGA 2 cut(s) 205, 323
TspRI CASTG 3 cut(s) 211, 369, 493
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 296
XceI RCATGY 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.