Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000259.1

Orthogroup ID

OG0008002

Physical Location & Seq

Genomic Coordinates Reverse (-)

74208 .. 75518

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000259.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgtcgaggttcaatgtgggagggaaggtggtggacaaggttgatttgttgaggaagaagaagttggcgtggcgcttcgatgtgtggcctttcggtatcctctatgctctgtggctcactacagttgtgcctagtttagactttggcgacgccattattgttctcggtggtgtagtggcgcttcacattctcgtttggcttttcactgcttggtccgtcgacttcaattgctttgtacactattccaaggtgaacgatatacaccaggctgatgcatgcaaagtaaccccagctaaattttccggttctaaagaagttgtaccactccatttccgtaagcttcttggaggttcttcatcctcagtgaatatggaggagatctactttgacttcagaaagcaacggtacattttttcaaatgagaaggagaacttttgcaagcttccataccctaccaaggaaaccatgagttactatttaaaaagtactggccatggctctgaagctaaagttgttgctgccacggaaaaatggggacggaatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase

Protein Analysis

182

Amino Acids

20.75

Weight (kDa)

9.3

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23630
fragaria_vesca	FvH4_5g30560 FvH4_5g30560 FvH4_5g30560 FvH4_5g30560
malus_domestica	MD08G1222500.v1.1 MD15G1415900.v1.1
prunus_persica	Prupe.1G560300_v2.0.a1 Prupe.1G560300_v2.0.a1
pyrus_communis	pycom08g19340 pycom15g36910
rosa_chinensis	RchiOBHm_Chr7g0225451
rosa_laevigata	RLG00000001818 RLG00000001819
rosa_multiflora	Rmu_co8033688.1_g000001 Rmu_sc0000259.1_g000014 Rmu_sc0000259.1_g000015
rosa_roxburghii	Rroxscaffold_3G00233810
rosa_rugosa	Rorug07G0229400
rosa_samantha	Rh7AG373800 Rh7BG364200 Rh7CG392100 Rh7DG375400
rosa_wichuraiana	Rw7G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	2 cut(s)	376, 522
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	4 cut(s)	237, 321, 407, 487
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	13, 226, 417
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	293, 340, 442, 506
AluI	AGCT	4 cut(s)	293, 340, 442, 506
AoxI	GGCC	2 cut(s)	86, 490
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	75, 181
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	492
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbvI	GCAGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	2 cut(s)	76, 182
BfuI	GTATCC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	246, 456, 493, 522
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	4 cut(s)	246, 456, 493, 522
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	505
BseYI	CCCAGC	1 cut(s)	289
BshFI	GGCC	2 cut(s)	88, 492
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	457
BsnI	GGCC	2 cut(s)	88, 492
Bsp1407I	TGTACA	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	493
BspANI	GGCC	2 cut(s)	88, 492
BspCNI	CTCAG	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	4 cut(s)	246, 456, 493, 522
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	246, 456, 493
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	124, 405
BstACI	GRCGYC	1 cut(s)	150
BstAUI	TGTACA	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	277, 440
BstDEI	CTNAG	1 cut(s)	361
BstDSI	CCRYGG	2 cut(s)	493, 522
BstF5I	GGATG	1 cut(s)	356
BstH2I	RGCGCY	2 cut(s)	76, 182
BstHHI	GCGC	2 cut(s)	75, 181
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	505
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	88, 492
BtgI	CCRYGG	2 cut(s)	493, 522
BtsCI	GGATG	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 369
Cac8I	GCNNGC	2 cut(s)	277, 440
CfoI	GCGC	2 cut(s)	75, 181
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	4 cut(s)	236, 320, 406, 486
CviAII	CATG	3 cut(s)	276, 466, 494
CviQI	GTAC	4 cut(s)	236, 320, 406, 486
DdeI	CTNAG	1 cut(s)	361
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
DraI	TTTAAA	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	490
Eco130I	CCWWGG	3 cut(s)	246, 456, 493
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	376, 522
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	3 cut(s)	246, 456, 493
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	3 cut(s)	246, 456, 493
FaeI	CATG	3 cut(s)	279, 469, 497
FaiI	YATR	7 cut(s)	105, 260, 277, 371, 448, 467, 495
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	3 cut(s)	275, 465, 493
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	74, 180
GluI	GCNGC	1 cut(s)	519
GsaI	CCCAGC	1 cut(s)	293
HaeII	RGCGCY	2 cut(s)	76, 182
HaeIII	GGCC	2 cut(s)	88, 492
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	2 cut(s)	75, 181
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	279, 469, 497
Hin6I	GCGC	2 cut(s)	73, 179
HinP1I	GCGC	2 cut(s)	73, 179
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	338, 440
HinfI	GANTC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	4 cut(s)	34, 220, 238, 253
Hpy188I	TCNGA	2 cut(s)	395, 502
Hpy8I	GTNNAC	4 cut(s)	34, 220, 238, 253
Hpy99I	CGWCG	2 cut(s)	152, 221
HpyAV	CCTTC	2 cut(s)	19, 418
HpyCH4III	ACNGT	2 cut(s)	124, 405
HpyCH4V	TGCA	3 cut(s)	275, 279, 438
HpyF3I	CTNAG	1 cut(s)	361
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	279, 469, 497
HspAI	GCGC	2 cut(s)	73, 179
Kzo9I	GATC	1 cut(s)	378
LpnPI	CCDG	5 cut(s)	251, 278, 303, 316, 474
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	283, 470
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	3 cut(s)	67, 70, 345
MfeI	CAATTG	1 cut(s)	226
MflI	RGATCY	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	2 cut(s)	226, 296
MluNI	TGGCCA	1 cut(s)	492
MnlI	CCTC	6 cut(s)	14, 45, 110, 341, 367, 370
Mox20I	TGGCCA	1 cut(s)	492
Mph1103I	ATGCAT	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	279, 469, 497
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	4 cut(s)	237, 321, 407, 487
RsaNI	GTAC	4 cut(s)	236, 320, 406, 486
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	9 cut(s)	11, 30, 42, 252, 295, 342, 352, 444, 508
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	213
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	2 cut(s)	226, 296
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	3 cut(s)	246, 456, 493
TaaI	ACNGT	2 cut(s)	124, 405
TaqI	TCGA	3 cut(s)	5, 78, 219
TasI	AATT	2 cut(s)	226, 296
TatI	WGTACW	2 cut(s)	235, 485
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	211, 369
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	3 cut(s)	205, 323, 539
TspRI	CASTG	2 cut(s)	211, 369
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.