Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008002

Physical Location & Seq

Genomic Coordinates Forward (+)

21004004 .. 21006301

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0229400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGACTGAGCTACTCATTAGAAAAGACCTGGGTGGTTCTCTCCCAGTTGAGAATGTTCAAGCCCTGGCTTCAAACAACTTGAAGGACATCCCGTGTCGATATCTCAGGCCTGAAGCTGAGATTGAACAAATTTCCATTGAGGACTCGCTTCAAATTCCAGTGGTTGATATGGACAAGCTAATAGGGAATCCATTGTTCCATGATGATGAATTGGCAAAACTTCATTTGGCTTGTAAGGAATGGGGCTTCTTTCAGCTGATCAATCATAGGGTATCAGAAGAAGTGATTGAGAAAATGAAGAATGACAAACAGGAGTTCTTCGGGCTGCCATTAGAAGTAAAGAAGGCCTATGCAACACAGCCGAATCACATCGAAGGCTATGGCCAAGCCTTTGTTGTTTCGGAAGAGCAAAAACTTGACTGGGGAGACATGCTCTTCCTTCTCTCTCAACCAGTCCGCCAAAGGACTCTCACATTCTGGCCTACCCTTCCCACTTCTTTCAGGGAGACATTGGACAAGTATTCACAGGAGCTGCAACGAGTAACAATCTACCTATTGAAGTCCATATCTAGTAACCTAGGAGTCAATTTAGAGAAAATGGAAAGCATGTTTGATGATGGAGTACAAGGAGTAAGAATGAACTACTACCCACCCTGTCCACAGGCAAACAAAGTTATCGGTCTCACTCCACACTCTGATGCTGTGGGTTTGACTCTACTACTGCAAGTTAATGAAGTTCAAGGATTACAAATCAGGAAAAATGGAAAATGGGTACCTGTGGAACCTGTAGTTGGTGCATTCATCGTCAACGTAGGGGACGTCATCGAGATAATGAGTAATGGAATATATAAGAGCATAGAGCACAGAGCAGTGGTGAACCCAGAGAAGGAACGCCTTTCAATTGCGGCATTCCACAGCCCAAATATTGGGACCATGATTGGTCCTTTACCGGATCTGATCAAGGAGAATGCAGCAAACTACAAGACTATGAGCAATGAGGAGTATATTAAGCTTATAGTGACCAGTAAACTTGATGGTAAAACTCTGCTGGACCAAATGAGATTGAACCAACAACTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase

Protein Analysis

361

Amino Acids

40.93

Weight (kDa)

5.32

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	53 - 162	1.4e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	211 - 308	7.6e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23630
fragaria_vesca	FvH4_5g30560 FvH4_5g30560 FvH4_5g30560 FvH4_5g30560
malus_domestica	MD08G1222500.v1.1 MD15G1415900.v1.1
prunus_persica	Prupe.1G560300_v2.0.a1 Prupe.1G560300_v2.0.a1
pyrus_communis	pycom08g19340 pycom15g36910
rosa_chinensis	RchiOBHm_Chr7g0225451
rosa_laevigata	RLG00000001818 RLG00000001819
rosa_multiflora	Rmu_co8033688.1_g000001 Rmu_sc0000259.1_g000014 Rmu_sc0000259.1_g000015
rosa_roxburghii	Rroxscaffold_3G00233810
rosa_rugosa	Rorug07G0229400
rosa_samantha	Rh7AG373800 Rh7BG364200 Rh7CG392100 Rh7DG375400
rosa_wichuraiana	Rw7G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	825
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccB7I	CCANNNNNTGG	1 cut(s)	929
AciI	CCGC	2 cut(s)	460, 908
AclWI	GGATC	1 cut(s)	963
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	132, 156
AcuI	CTGAAG	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	822
AfaI	GTAC	2 cut(s)	627, 777
AfiI	CCNNNNNNNGG	3 cut(s)	794, 889, 929
AgsI	TTSAA	9 cut(s)	62, 75, 85, 128, 155, 562, 743, 903, 1069
AjnI	CCWGG	2 cut(s)	30, 66
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	6 cut(s)	13, 119, 181, 259, 535, 1015
AluI	AGCT	6 cut(s)	13, 119, 181, 259, 535, 1015
Alw21I	GWGCWC	1 cut(s)	867
Alw26I	GTCTC	3 cut(s)	423, 503, 689
AlwI	GGATC	1 cut(s)	963
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	4 cut(s)	110, 348, 385, 482
ApeKI	GCWGC	3 cut(s)	328, 535, 974
ApoI	RAATTY	2 cut(s)	132, 156
Asp718I	GGTACC	1 cut(s)	775
AspA2I	CCTAGG	1 cut(s)	580
AspS9I	GGNCC	3 cut(s)	933, 944, 1054
AsuHPI	GGTGA	1 cut(s)	889
AvaII	GGWCC	3 cut(s)	933, 944, 1054
AvrII	CCTAGG	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	867
BbvI	GCAGC	3 cut(s)	315, 522, 986
BccI	CCATC	2 cut(s)	614, 1031
BciT130I	CCWGG	2 cut(s)	32, 68
BclI	TGATCA	2 cut(s)	261, 960
BcoDI	GTCTC	3 cut(s)	423, 503, 689
BfaI	CTAG	2 cut(s)	573, 581
BfmI	CTRYAG	1 cut(s)	789
BisI	GCNGC	4 cut(s)	329, 536, 909, 975
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	4 cut(s)	330, 537, 910, 976
Bme1390I	CCNGG	2 cut(s)	32, 68
Bme18I	GGWCC	3 cut(s)	933, 944, 1054
BmgT120I	GGNCC	3 cut(s)	933, 944, 1054
BmiI	GGNNCC	3 cut(s)	777, 786, 934
BmrFI	CCNGG	2 cut(s)	32, 68
BmrI	ACTGGG	2 cut(s)	41, 433
BmsI	GCATC	1 cut(s)	691
BmuI	ACTGGG	2 cut(s)	41, 433
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BsaHI	GRCGYC	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	31, 66, 580
BsaWI	WCCGGW	1 cut(s)	952
Bsc4I	CCNNNNNNNGG	3 cut(s)	794, 889, 929
Bse1I	ACTGG	5 cut(s)	47, 161, 428, 455, 1026
Bse3DI	GCAATG	1 cut(s)	1003
BseBI	CCWGG	2 cut(s)	32, 68
BseDI	CCNNGG	3 cut(s)	31, 66, 580
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	794, 889, 929
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	2 cut(s)	111, 121
BseNI	ACTGG	5 cut(s)	47, 161, 428, 455, 1026
BseRI	GAGGAG	1 cut(s)	1016
BseXI	GCAGC	3 cut(s)	315, 522, 986
BshFI	GGCC	4 cut(s)	112, 350, 387, 484
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	867
BsiSI	CCGG	1 cut(s)	953
BslFI	GGGAC	2 cut(s)	833, 946
BslI	CCNNNNNNNGG	3 cut(s)	794, 889, 929
BsmAI	GTCTC	3 cut(s)	423, 503, 689
BsmFI	GGGAC	2 cut(s)	833, 946
BsmI	GAATGC	3 cut(s)	800, 911, 976
BsnI	GGCC	4 cut(s)	112, 350, 387, 484
Bso31I	GGTCTC	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	3 cut(s)	261, 955, 960
BspACI	CCGC	2 cut(s)	460, 908
BspANI	GGCC	4 cut(s)	112, 350, 387, 484
BspCNI	CTCAG	2 cut(s)	112, 120
BspLI	GGNNCC	3 cut(s)	777, 786, 934
BspPI	GGATC	1 cut(s)	963
BspQI	GCTCTTC	2 cut(s)	402, 443
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	1003
BsrI	ACTGG	5 cut(s)	47, 161, 428, 455, 1026
BssECI	CCNNGG	3 cut(s)	31, 66, 580
BssMI	GATC	3 cut(s)	261, 955, 960
BssNI	GRCGYC	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	32, 68
Bst6I	CTCTTC	2 cut(s)	402, 443
BstACI	GRCGYC	1 cut(s)	822
BstDEI	CTNAG	3 cut(s)	9, 107, 120
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	264, 958, 963
BstMAI	GTCTC	3 cut(s)	423, 503, 689
BstMBI	GATC	3 cut(s)	261, 955, 960
BstNI	CCWGG	2 cut(s)	32, 68
BstNSI	RCATGY	2 cut(s)	436, 613
BstSCI	CCNGG	2 cut(s)	30, 66
BstSFI	CTRYAG	1 cut(s)	789
BstV1I	GCAGC	3 cut(s)	315, 522, 986
BstX2I	RGATCY	1 cut(s)	955
BstYI	RGATCY	1 cut(s)	955
BsuRI	GGCC	4 cut(s)	112, 350, 387, 484
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	168, 879
CaiI	CAGNNNCTG	1 cut(s)	535
Cfr13I	GGNCC	3 cut(s)	933, 944, 1054
Csp6I	GTAC	2 cut(s)	626, 776
CviAII	CATG	4 cut(s)	203, 433, 610, 937
CviQI	GTAC	2 cut(s)	626, 776
DdeI	CTNAG	3 cut(s)	9, 107, 120
DpnI	GATC	3 cut(s)	263, 957, 962
DpnII	GATC	3 cut(s)	261, 955, 960
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	402, 443
EarI	CTCTTC	2 cut(s)	402, 443
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	580
Eco147I	AGGCCT	2 cut(s)	112, 350
Eco31I	GGTCTC	1 cut(s)	689
Eco32I	GATATC	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	933, 944, 1054
Eco57I	CTGAAG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	30, 66
EcoRV	GATATC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	4 cut(s)	206, 436, 613, 940
FaqI	GGGAC	2 cut(s)	833, 946
FatI	CATG	4 cut(s)	202, 432, 609, 936
FbaI	TGATCA	2 cut(s)	261, 960
Fnu4HI	GCNGC	4 cut(s)	329, 536, 909, 975
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	329, 536, 909, 975
FspBI	CTAG	2 cut(s)	573, 581
GluI	GCNGC	4 cut(s)	329, 536, 909, 975
HaeIII	GGCC	4 cut(s)	112, 350, 387, 484
HapII	CCGG	1 cut(s)	953
Hin1I	GRCGYC	1 cut(s)	822
Hin1II	CATG	4 cut(s)	206, 436, 613, 940
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	6 cut(s)	146, 190, 367, 469, 585, 715
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	1 cut(s)	889
Hpy166II	GTNNAC	4 cut(s)	662, 811, 880, 1031
Hpy188I	TCNGA	4 cut(s)	280, 406, 700, 960
Hpy188III	TCNNGA	2 cut(s)	757, 829
Hpy8I	GTNNAC	4 cut(s)	662, 811, 880, 1031
HpyAV	CCTTC	6 cut(s)	79, 340, 371, 452, 500, 883
HpyCH4IV	ACGT	2 cut(s)	813, 822
HpyCH4V	TGCA	5 cut(s)	356, 538, 727, 800, 974
HpyF3I	CTNAG	3 cut(s)	9, 107, 120
HpySE526I	ACGT	2 cut(s)	813, 822
Hsp92I	GRCGYC	1 cut(s)	822
Hsp92II	CATG	4 cut(s)	206, 436, 613, 940
KpnI	GGTACC	1 cut(s)	779
Ksp22I	TGATCA	2 cut(s)	261, 960
Kzo9I	GATC	3 cut(s)	261, 955, 960
LguI	GCTCTTC	2 cut(s)	402, 443
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	315, 522, 986
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	573, 581
MaeII	ACGT	2 cut(s)	813, 822
MaeIII	GTNAC	3 cut(s)	544, 575, 1021
MalI	GATC	3 cut(s)	263, 957, 962
MboI	GATC	3 cut(s)	261, 955, 960
MboII	GAAGA	5 cut(s)	293, 313, 313, 419, 430
MfeI	CAATTG	1 cut(s)	903
MflI	RGATCY	1 cut(s)	955
MhlI	GDGCHC	1 cut(s)	867
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	132, 156, 212, 589, 903
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	4 cut(s)	140, 463, 594, 709
MnlI	CCTC	2 cut(s)	136, 994
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	732, 1011
MslI	CAYNNNNRTG	2 cut(s)	207, 699
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	2 cut(s)	32, 68
MunI	CAATTG	1 cut(s)	903
Mva1269I	GAATGC	3 cut(s)	800, 911, 976
MvaI	CCWGG	2 cut(s)	32, 68
NdeII	GATC	3 cut(s)	261, 955, 960
NlaIII	CATG	4 cut(s)	206, 436, 613, 940
NlaIV	GGNNCC	3 cut(s)	777, 786, 934
NmuCI	GTSAC	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	436, 613
PceI	AGGCCT	2 cut(s)	112, 350
PciSI	GCTCTTC	2 cut(s)	402, 443
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PctI	GAATGC	3 cut(s)	800, 911, 976
PfeI	GAWTC	2 cut(s)	190, 367
PflMI	CCANNNNNTGG	1 cut(s)	929
PkrI	GCNGC	4 cut(s)	330, 537, 910, 976
PleI	GAGTC	4 cut(s)	140, 463, 593, 709
PpsI	GAGTC	4 cut(s)	140, 463, 593, 709
Psp6I	CCWGG	2 cut(s)	30, 66
PspGI	CCWGG	2 cut(s)	30, 66
PspN4I	GGNNCC	3 cut(s)	777, 786, 934
PspPI	GGNCC	3 cut(s)	933, 944, 1054
PstNI	CAGNNNCTG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	955
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	627, 777
RsaNI	GTAC	2 cut(s)	626, 776
RseI	CAYNNNNRTG	2 cut(s)	207, 699
SapI	GCTCTTC	2 cut(s)	402, 443
SaqAI	TTAA	2 cut(s)	732, 1011
SatI	GCNGC	4 cut(s)	329, 536, 909, 975
Sau3AI	GATC	3 cut(s)	261, 955, 960
Sau96I	GGNCC	3 cut(s)	933, 944, 1054
SchI	GAGTC	4 cut(s)	140, 463, 594, 709
ScrFI	CCNGG	2 cut(s)	32, 68
SduI	GDGCHC	1 cut(s)	867
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	3 cut(s)	933, 944, 1054
SmiMI	CAYNNNNRTG	2 cut(s)	207, 699
Sse9I	AATT	5 cut(s)	132, 156, 212, 589, 903
SseBI	AGGCCT	2 cut(s)	112, 350
SsiI	CCGC	2 cut(s)	460, 908
SspI	AATATT	1 cut(s)	928
SspMI	CTAG	2 cut(s)	573, 581
StuI	AGGCCT	2 cut(s)	112, 350
StyD4I	CCNGG	2 cut(s)	30, 66
StyI	CCWWGG	1 cut(s)	580
TaiI	ACGT	2 cut(s)	816, 825
TaqI	TCGA	3 cut(s)	100, 375, 828
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	5 cut(s)	132, 156, 212, 589, 903
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	1 cut(s)	911
TfiI	GAWTC	2 cut(s)	190, 367
Tru1I	TTAA	2 cut(s)	732, 1011
Tru9I	TTAA	2 cut(s)	732, 1011
TscAI	CASTG	2 cut(s)	168, 879
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	3 cut(s)	328, 535, 974
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	7 cut(s)	215, 225, 314, 656, 750, 793, 1070
TspRI	CASTG	2 cut(s)	168, 879
Van91I	CCANNNNNTGG	1 cut(s)	929
VpaK11BI	GGWCC	3 cut(s)	933, 944, 1054
XapI	RAATTY	2 cut(s)	132, 156
XceI	RCATGY	2 cut(s)	436, 613
XmaJI	CCTAGG	1 cut(s)	580
XspI	CTAG	2 cut(s)	573, 581
ZraI	GACGTC	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.