Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008002

Physical Location & Seq

Genomic Coordinates Reverse (-)

19362479 .. 19365086

Gene Structure 2608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g19340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTCCATGTGGGAGGGAAGGTGGTGGATAAAGTTGGTTTGTTGAGGACTAAGAGCTTGCTGTGGCGATTCGATGTCTGGCCTTTCGCTATCCTTTACGCTATCTGGCTTACTACCATTGTGCCCAGCGTTGATATTGTGGATTCTGGGATTGTTTTCGGTGCCCTCGTAGCGCTTCACATTCTCGTTTGGCTTTTTACTGTTTGGTCCGTCGATTTCAAATGCTTTGTACATTATAGCAAGGTAAATGATATTCACCAGGCAGGTGCATGCAAAATAACGCCAGCAAAATTTTCTGGTTCTAAAGAAATAGTATCACTTCGTTTCCGTAAGCTTGGAGGCTCCTCATCCTCAGTGGATGTTGAAGAGATTTACTTTGACTTCAGAAAGCAACGTTATATCTTTTCAAAAGAGAACGATAACTTTTGCAAGCTTCCTTACCCTACGAAGGAATCATTCGGTTACTATTTAAAAAGTACTGGCCATGGCTCTGAAGCTAAAGTTGTTGCTGCTATTGAAAAATGGGGACGGAATGCATTTGAATATCCACAACCTACATTCCAGAAATTAATGAAAGAAAATTGCATGGAGCCCTTCTTTGTCTTCCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTATAGTTTGTTCACGCTTTTTATGCTGTTTATGTTCGAGTCAACAATGGCTAAAAGTCAGTTAAAGACTCTTACTGAGCTAAGACGTGTCAGAGTGGATAACCAGACCCTCATGGTGCATCGCTGTGGAAAGTGGATAAAGCTTGCTGGAACTGATCTTTTGCCCGGAGATGTTGTTTCTGTTGGGCGAGCTACTGGTTCAAATGGAGAAGATAGGGCTGTGCCAGCAGATATGCTTCTATTAGCTGGAAACGCTATTGTCAACGAAGCTATTCTCACAGGCGAGTCTACTCCCCAGTGGAAGGTGGTCACCGCTTGTCAACTTATAAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase

Protein Analysis

329

Amino Acids

37.24

Weight (kDa)

8.74

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23630
fragaria_vesca	FvH4_5g30560 FvH4_5g30560 FvH4_5g30560 FvH4_5g30560
malus_domestica	MD08G1222500.v1.1 MD15G1415900.v1.1
prunus_persica	Prupe.1G560300_v2.0.a1 Prupe.1G560300_v2.0.a1
pyrus_communis	pycom08g19340 pycom15g36910
rosa_chinensis	RchiOBHm_Chr7g0225451
rosa_laevigata	RLG00000001818 RLG00000001819
rosa_multiflora	Rmu_co8033688.1_g000001 Rmu_sc0000259.1_g000014 Rmu_sc0000259.1_g000015
rosa_roxburghii	Rroxscaffold_3G00233810
rosa_rugosa	Rorug07G0229400
rosa_samantha	Rh7AG373800 Rh7BG364200 Rh7CG392100 Rh7DG375400
rosa_wichuraiana	Rw7G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	938
AciI	CCGC	1 cut(s)	963
AclI	AACGTT	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	481
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	2 cut(s)	367, 513
AfaI	GTAC	2 cut(s)	231, 478
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	448, 952
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	6 cut(s)	220, 365, 408, 518, 542, 852
AjiI	CACGTC	1 cut(s)	737
AjnI	CCWGG	2 cut(s)	258, 606
AluBI	AGCT	9 cut(s)	57, 334, 433, 497, 730, 793, 842, 896, 920
AluI	AGCT	9 cut(s)	57, 334, 433, 497, 730, 793, 842, 896, 920
Alw26I	GTCTC	1 cut(s)	629
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	2 cut(s)	80, 481
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	921
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	2 cut(s)	248, 952
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	2 cut(s)	126, 166
BalI	TGGCCA	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	595
BbvI	GCAGC	1 cut(s)	496
BciT130I	CCWGG	2 cut(s)	260, 608
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	1 cut(s)	629
BfoI	RGCGCY	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmcAI	AGTACT	1 cut(s)	478
Bme1390I	CCNGG	3 cut(s)	260, 608, 816
Bme18I	GGWCC	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	163, 343, 591
BmrFI	CCNGG	3 cut(s)	260, 608, 816
BmrI	ACTGGG	1 cut(s)	940
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	940
BpiI	GAAGAC	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	816
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	1 cut(s)	484
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 810, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 952
Bse1I	ACTGG	3 cut(s)	484, 850, 946
BseBI	CCWGG	2 cut(s)	260, 608
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	3 cut(s)	347, 364, 643
BseLI	CCNNNNNNNGG	2 cut(s)	448, 952
BseMII	CTCAG	2 cut(s)	366, 717
BseNI	ACTGG	3 cut(s)	484, 850, 946
BseRI	GAGGAG	1 cut(s)	334
BseSI	GKGCMC	2 cut(s)	126, 166
BseXI	GCAGC	1 cut(s)	496
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	82, 483
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	448, 952
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	540
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	82, 483
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	126, 166, 594
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	805
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	1 cut(s)	963
BspANI	GGCC	2 cut(s)	82, 483
BspCNI	CTCAG	2 cut(s)	365, 718
BspLI	GGNNCC	3 cut(s)	163, 343, 591
BspMI	ACCTGC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	629
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	484, 850, 946
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	1 cut(s)	805
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	260, 608
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	7 cut(s)	59, 271, 285, 431, 795, 840, 876
BstDEI	CTNAG	4 cut(s)	51, 352, 726, 731
BstDSI	CCRYGG	1 cut(s)	484
BstEII	GGTNACC	1 cut(s)	958
BstF5I	GGATG	3 cut(s)	347, 364, 643
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	808
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	805
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 673, 875, 902
BstNI	CCWGG	2 cut(s)	260, 608
BstNSI	RCATGY	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	258, 606, 814
BstSLI	GKGCMC	2 cut(s)	126, 166
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	82, 483
BtgI	CCRYGG	1 cut(s)	484
BtgZI	GCGATG	1 cut(s)	755
BtrI	CACGTC	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	347, 364, 643
BtsIMutI	CAGTG	2 cut(s)	360, 953
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	7 cut(s)	59, 271, 285, 431, 795, 840, 876
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	230, 477
CviAII	CATG	5 cut(s)	8, 270, 485, 586, 763
CviQI	GTAC	2 cut(s)	230, 477
DdeI	CTNAG	4 cut(s)	51, 352, 726, 731
DpnI	GATC	1 cut(s)	807
DpnII	GATC	1 cut(s)	805
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	367, 513
Eco91I	GGTNACC	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	958
EcoRII	CCWGG	2 cut(s)	258, 606
EcoT14I	CCWWGG	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	5 cut(s)	11, 273, 488, 589, 766
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	5 cut(s)	7, 269, 484, 585, 762
FblI	GTMKAC	1 cut(s)	938
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	3 cut(s)	334, 371, 650
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	1 cut(s)	510
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	510
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	82, 483
HapII	CCGG	1 cut(s)	816
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	11, 273, 488, 589, 766
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	3 cut(s)	693, 913, 971
HindII	GTYRAC	3 cut(s)	693, 913, 971
HindIII	AAGCTT	3 cut(s)	332, 431, 791
HinfI	GANTC	6 cut(s)	69, 143, 452, 689, 718, 935
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	2 cut(s)	248, 952
Hpy166II	GTNNAC	5 cut(s)	663, 693, 913, 939, 971
Hpy188I	TCNGA	3 cut(s)	386, 493, 743
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	5 cut(s)	663, 693, 913, 939, 971
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	13, 442, 604, 946
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	394, 736
HpyCH4V	TGCA	6 cut(s)	269, 273, 429, 536, 585, 769
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 673, 875, 902
HpyF3I	CTNAG	4 cut(s)	51, 352, 726, 731
HpySE526I	ACGT	2 cut(s)	394, 736
Hsp92II	CATG	5 cut(s)	11, 273, 488, 589, 766
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	805
LmnI	GCTCC	3 cut(s)	9, 347, 589
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	778
MaeII	ACGT	2 cut(s)	394, 736
MaeIII	GTNAC	2 cut(s)	461, 958
MalI	GATC	1 cut(s)	807
MboI	GATC	1 cut(s)	805
MboII	GAAGA	3 cut(s)	377, 595, 872
MhlI	GDGCHC	3 cut(s)	126, 166, 594
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	3 cut(s)	290, 566, 580
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	3 cut(s)	698, 712, 944
MnlI	CCTC	7 cut(s)	8, 39, 176, 332, 355, 361, 770
Mox20I	TGGCCA	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	4 cut(s)	470, 569, 713, 985
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	483
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	3 cut(s)	260, 608, 816
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	260, 608
MwoI	GCNNNNNNNGC	4 cut(s)	170, 673, 875, 902
NciI	CCSGG	1 cut(s)	816
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	1 cut(s)	805
NlaIII	CATG	5 cut(s)	11, 273, 488, 589, 766
NlaIV	GGNNCC	3 cut(s)	163, 343, 591
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	538
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	69, 143, 452
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	3 cut(s)	697, 712, 943
PpsI	GAGTC	3 cut(s)	697, 712, 943
PshBI	ATTAAT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	977
Psp1406I	AACGTT	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	258, 606
PspEI	GGTNACC	1 cut(s)	958
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	258, 606
PspN4I	GGNNCC	3 cut(s)	163, 343, 591
PspPI	GGNCC	1 cut(s)	207
RsaI	GTAC	2 cut(s)	231, 478
RsaNI	GTAC	2 cut(s)	230, 477
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	4 cut(s)	470, 569, 713, 985
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	805
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	478
SchI	GAGTC	3 cut(s)	698, 712, 944
ScrFI	CCNGG	3 cut(s)	260, 608, 816
SduI	GDGCHC	3 cut(s)	126, 166, 594
SfaNI	GCATC	1 cut(s)	778
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	774
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	290, 566, 580
SsiI	CCGC	1 cut(s)	963
SspI	AATATT	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	258, 606, 814
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	397, 739
TaqI	TCGA	3 cut(s)	72, 213, 687
TasI	AATT	3 cut(s)	290, 566, 580
TatI	WGTACW	2 cut(s)	229, 476
TfiI	GAWTC	3 cut(s)	69, 143, 452
Tru1I	TTAA	4 cut(s)	470, 569, 713, 985
Tru9I	TTAA	4 cut(s)	470, 569, 713, 985
TscAI	CASTG	2 cut(s)	360, 953
TseFI	GTSAC	1 cut(s)	958
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	2 cut(s)	587, 654
TspGWI	ACGGA	3 cut(s)	199, 317, 544
TspRI	CASTG	2 cut(s)	360, 953
VpaK11BI	GGWCC	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	938
XmnI	GAANNNNTTC	1 cut(s)	921
ZrmI	AGTACT	1 cut(s)	478
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.