RchiOBHm_Chr7g0225451

cation-transporting ATPase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
48181471 .. 48196354
14884 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20192

Sequence Viewer

Length: 3558 bp
ATGTCGAGGTTCAATGTGGGAGGGAAGGTGGTGGACAAGGTTGATTTGTTGAGGAAGAAGAAGTTGGCGTGGCGCTTCGATGTGTGGCCTTTCGGTATCCTCTATGCTCTGTGGCTCACCACAGTTGTGCCTAGTTTAGACTTTGGCGACGCCATTATTGTTCTCGGTGGTGTAGTGGCGCTTCACATTCTCGTTTGGCTTTTCACTGCTTGGTCCGTCGACTTCAATTGCTTTGTACACTATTCCAAGGTGAACGATATACACCAGGCTGATGCATGCAAAATAACCCCAGCTAAATTTTCCGGTTCTAAAGAAGTTGTACCACTCCATTTCCGTAAGCTTCTTGGAGGTTCTTCATCCTCAGTGAATATGGAGGAGATCTACTTTGACTTCAGAAAGCAACGGTACATTTTTTCAAATGAGAAGGAGAACTTTTGCAAGCTTCCATACCCTACCAAGGAAACCATGAGTTACTATTTAAAAAGTACTGGCCATGGCTCTGAAGCTAAAGTTGTTGCTGCTACAGAAAAATGGGGACGGAATCTATTTGAATATCCACAACCTACATTCCAGAAATTAATGAAAGAAAATTGTATGCAGCCCTTCTTTGTATTTCAGGTGTTCTGCGTGGGTCTTTGGTGTCTGGATGAATATTGGTATTATAGTTTGTTTACACTTTTCATGCTGTTCATGTTTGAGTCAACAATGGCAAAAAGTCAATTAAAGACTCTGACTGAGCTAAGACGTGTCAGAGTGGATAGCCAGACCTTAATGGTGCATCGATGTGGGAAGTGGATAAAGCTAGCTGGAACTGATCTTTTGCCTGGGGATGTTGTTTCAATTGGACGATCTTCTGGTCCAACTGGAGAAGATAGGACTGTACCAGCCGACATGCTTATATTAGCAGGAAGTGCTATTGTCAATGAAGCCATTCTCACTGGCGAGTCTACTCCGCAGTGGAAGGTATCAATCATGAGCAGAGGAGCTGAGGAGAAGTTATCAGCTAAGCGGGACAAAAGCCATGTTTTATTTGGTGGGACTAAGATATTGCAGCATACTCCAGATAAGGGTTTTCCTTTAAAAACCCCTGATGCGGGCTGTGTGGCAGTTGTTCTGAGGACTGGGTTTGAAACAAGTCAGGGAAAACTTATGCGCACAATTTTGTTTTCCACAGAGAGGGTGACAGCTAACAGCTGGGAAAGTGGGCTGTTCATTTTATTCTTGGTCGTATTTGCAGTGATAGCTGCTGGTTATGTTCTAAAAAAGGGGCTTGAGGATCCCACTAGAAGCAAATACAAGCTTTTTCTTAGTTGTTCACTTATTATTACCTCTGTGATTCCTCCTGAGCTGCCAATGGAATTATCTATAGCTGTCAATACATCTCTAATTGCTCTGGCACGACGTGGAATATTTTGTACAGAACCTTTTCGTATACCCTTTGCTGGAAAGGTCGATATATGTTGTTTTGACAAAACAGGGACACTTACATCAGATGACATGGAATTCTGCGGAGTTGTTGGGTTGGCTGGTAGTACGGATTTGGAGACGGATATGACTAAAGTAGATGGGCACACATTAGAAATTTTGGCCTCTTGTCATGCCTTGGTGTTTGTGGACAATAAGCTGGTTGGTGATCCTCTCGAAAAGGCTGCACTTAAGGGAATAGATTGGAGCTTTAAATCTGATGAGAAGGCCATGCCAAAAAAGGGCACTGGTCAAGCTGTGCAGATTGTTCAGAGACACCACTTTGCTTCCCACCTGAAACGAATGGCAGTTGTTGTTCGCATTGAAGAGAATTTTTTTGCTTTTGTGAAGGGTGCCCCTGAAACTATTCAGGGTAGACTCACTGAGGTGCCATCATATTATGTTGAAACTTACAAGAAATTTACCCGACAAGGATCTCGTGTTCTGGCTCTTGCCTACAAGTCCTTTGGCGACATGACAGTGAGTGAAGCCAGAAGCTTGGATAGGGATGTGGTGGAGAGTGGCCTCAAATTTGCCGGTTTTGCGGTTTTTAACTGTCCTATTAGAGCAGATTCAGCCACTGTTTTATCTGAGCTTAAAGGGTCCTCGCATGATTTGGTGATGATTACTGGTGATCAAGCTTTGACGGCCTGCCATGTTGCTACTCAAGTTCATATTATATCAAAGCCAGCATTAATTCTAGGCCCAAAAAGGAACAGTGAAGAATATGAGTGGATATCACCCGACGAGACTGAGATGATTCCTTACAATGAAAATGAAGTGGAAACTTTGTCAGAGACTCATGATCTTTGTATTGGAGGGGACTGCATTGAAATGTTGCAACGAACTTCTGCCGTCATACGAGTCATTCCATATGTTAAGGTTTATGCAAGAGTTGCTCCGGAGCAGAAAGAACTCATATTGACTACTTTCAAAACGGTGGGAAGGATAACATTAATGTGTGGAGATGGAACGAATGATGTTGGAGCTTTGAAACAGGCCCATGTGGGAGTTGCTTTACTGAATGCGGTGCCTCCAGCTAAGAGTGCAAAGTCTGCCAATGAAACATCTAAAGATGAGAGTAAGAAGTCTATCCGCCCAAAGAAGTCCAAGTCTGCATCGGATGCTGCAGATAAATCTGCCAGTGTAAATGGAGAAGTCTCAGCTGGTAATCCGCGTAATCAGCGTCTGACAGCTGCTGAGTTGCAACGACAAAAGATTACTTCATTACAAAAGAAACTAATGGATGAGCTGAATGAGGAGGGGGATGGTCATGCGGCTCCAATTGTAAAGCTTGGAGATGCCTCCATGGCATCACCGTTCACGGCAAAGCATGCATCTGTTGCTCCCACCACTGACATAATTCGTCAAGGTCGCAGTACTCTGGTGACTACCCTACAAATGTTCAAAATTCTAGGCCTTAACTGCCTGGCAACAGCATATGTGTTGAGTGTTATGTATTTGGATGGTGTCAAGCTAGGTGATATGCAGGCTACAATCAGTGGTGTATTTACAGCTGCCTTTTTCCTCTTCATCTCGCACGCACGTCCTCTGCAAACCCTTTCATCTGAACGGCCTCATCCTAATATCTTTTGCGCCTATGTCTTTCTTTCTCTGCTAGGACAGTTTGCAATCCACTTGCTCTTCTTGATTAGTTCTGTCAACGAGGCTGAGAAACACATGCCTGATGAGTGCATTGAACCAGACTCCGAGTTTCATCCCAACCTTGTAAATACAGTATCATACATGGTGAGCATGATGCTCCAGGTGGCTACATTTGCTGTGAACTACATGGGGCATCCCTTCAATCAGAGCATTTCAGAGAACAAACCATTCTTATATGCCCTTGTATCTGCCGTTGGTTTTTTCACGGTTATCACATCTGATGTTTTTAGGAATTTGAATGACTCCCTTAAGCTGGTCCCCTTGCCTTTGGGATTGAGGGATAAGCTATTGACATGGGCTCTTCTCATGTACTTGAGCTGTTACTCGTGGGAGAGATTTTTAAGGTGGGCTTTCCCAGGTAAGGTCCCATCCTGGAAGAAGCGACAACGTCTCGCTGCAAAAAGTCTGGAAAAGAAGAAGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1185

Amino Acids

131.64

Weight (kDa)

8.7

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2TM_P5A-ATPase PF23143 20 - 85 7.8e-21 P5A-ATPase, transmembrane helical hairpin
E1-E2_ATPase PF00122 258 - 386 1.3e-11 P-type ATPase actuator domain
Cation_ATPase PF13246 541 - 678 1.1e-08 P-type ATPase, cytoplasmic domain N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1154
AccB1I GGYRCC 3 cut(s) 1817, 1852, 2494
AccI GTMKAC 4 cut(s) 219, 947, 1432, 1840
AccII CGCG 1 cut(s) 2641
AccIII TCCGGA 1 cut(s) 2365
AciI CCGC 9 cut(s) 953, 1009, 1094, 1509, 2009, 2492, 2560, 2639, 2741
AclWI GGATC 4 cut(s) 1271, 1284, 1628, 1906
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 8 cut(s) 296, 1502, 1581, 1795, 1883, 1994, 2874, 3361
AcuI CTGAAG 2 cut(s) 376, 522
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 1403
AfaI GTAC 9 cut(s) 237, 321, 407, 487, 882, 1417, 1534, 2845, 3440
AfiI CCNNNNNNNGG 9 cut(s) 457, 1067, 1093, 1094, 1176, 1442, 1706, 3382, 3490
AflII CTTAAG 2 cut(s) 1655, 3377
AflIII ACRYGT 1 cut(s) 745
AjiI CACGTC 3 cut(s) 746, 1403, 3011
AjnI CCWGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AleI CACNNNNGTG 2 cut(s) 125, 1850
AloI GAACNNNNNNTCC 2 cut(s) 1890, 1922
Alw26I GTCTC 6 cut(s) 1538, 1732, 2207, 2255, 2629, 3524
AlwI GGATC 4 cut(s) 1271, 1284, 1628, 1906
AlwNI CAGNNNCTG 3 cut(s) 2045, 2653, 2663
Aor13HI TCCGGA 1 cut(s) 2365
ApoI RAATTY 8 cut(s) 296, 1502, 1581, 1795, 1883, 1994, 2874, 3361
AseI ATTAAT 3 cut(s) 578, 2159, 2420
Asp700I GAANNNNTTC 3 cut(s) 930, 1425, 1830
AspLEI GCGC 4 cut(s) 75, 181, 1155, 3062
AspS9I GGNCC 7 cut(s) 213, 857, 2067, 2168, 2464, 3385, 3493
AsuNHI GCTAGC 1 cut(s) 802
AvaII GGWCC 5 cut(s) 213, 857, 2067, 3385, 3493
BaeGI GKGCMC 3 cut(s) 1572, 1712, 1822
BalI TGGCCA 1 cut(s) 492
BamHI GGATCC 1 cut(s) 1276
BanI GGYRCC 3 cut(s) 1817, 1852, 2494
BanII GRGCYC 1 cut(s) 3430
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BauI CACGAG 2 cut(s) 1902, 3454
BbvCI CCTCAGC 1 cut(s) 987
BccI CCATC 6 cut(s) 1559, 1864, 2426, 2726, 2924, 3505
BceAI ACGGC 5 cut(s) 2127, 2303, 2805, 3053, 3305
BcgI CGANNNNNNTGC 2 cut(s) 1631, 1665
BciT130I CCWGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
BciVI GTATCC 1 cut(s) 107
BclI TGATCA 1 cut(s) 2098
BcoDI GTCTC 6 cut(s) 1538, 1732, 2207, 2255, 2629, 3524
BfaI CTAG 7 cut(s) 132, 803, 1284, 2165, 2879, 2942, 3083
BfmI CTRYAG 3 cut(s) 522, 1365, 2592
BfoI RGCGCY 2 cut(s) 76, 182
BfrI CTTAAG 2 cut(s) 1655, 3377
BfuI GTATCC 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 2774
BglII AGATCT 1 cut(s) 378
BlpI GCTNAGC 1 cut(s) 1005
BmcAI AGTACT 2 cut(s) 487, 2845
Bme1390I CCNGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
Bme18I GGWCC 5 cut(s) 213, 857, 2067, 3385, 3493
BmgBI CACGTC 3 cut(s) 746, 1403, 3011
BmgT120I GGNCC 7 cut(s) 213, 857, 2067, 2168, 2464, 3385, 3493
BmiI GGNNCC 8 cut(s) 1278, 1819, 1854, 2068, 2496, 2745, 3387, 3495
BmrFI CCNGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
BmrI ACTGGG 1 cut(s) 1131
BmtI GCTAGC 1 cut(s) 806
BmuI ACTGGG 1 cut(s) 1131
BpmI CTGGAG 4 cut(s) 885, 1044, 2484, 3212
Bpu10I CCTNAGC 2 cut(s) 987, 1344
Bpu1102I GCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 3 cut(s) 1292, 2115, 3463
Bsa29I ATCGAT 1 cut(s) 781
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 7 cut(s) 246, 456, 493, 824, 1602, 2772, 3484
BsaWI WCCGGW 2 cut(s) 302, 2365
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 9 cut(s) 457, 1067, 1093, 1094, 1176, 1442, 1706, 3382, 3490
Bse118I RCCGGY 1 cut(s) 2000
Bse1I ACTGG 7 cut(s) 493, 868, 943, 1126, 1717, 2098, 2607
BseAI TCCGGA 1 cut(s) 2365
BseBI CCWGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
BseCI ATCGAT 1 cut(s) 781
BseDI CCNNGG 7 cut(s) 246, 456, 493, 824, 1602, 2772, 3484
BseLI CCNNNNNNNGG 9 cut(s) 457, 1067, 1093, 1094, 1176, 1442, 1706, 3382, 3490
BseNI ACTGG 7 cut(s) 493, 868, 943, 1126, 1717, 2098, 2607
BseRI GAGGAG 4 cut(s) 389, 996, 1004, 2738
BseSI GKGCMC 3 cut(s) 1572, 1712, 1822
BseYI CCCAGC 2 cut(s) 289, 1194
BsgI GTGCAG 2 cut(s) 1635, 1745
Bsh1236I CGCG 1 cut(s) 2641
BshNI GGYRCC 3 cut(s) 1817, 1852, 2494
BshVI ATCGAT 1 cut(s) 781
BsiSI CCGG 3 cut(s) 303, 2001, 2366
BslFI GGGAC 7 cut(s) 549, 1025, 1051, 1492, 2300, 3371, 3479
BslI CCNNNNNNNGG 9 cut(s) 457, 1067, 1093, 1094, 1176, 1442, 1706, 3382, 3490
BsmAI GTCTC 6 cut(s) 1538, 1732, 2207, 2255, 2629, 3524
BsmBI CGTCTC 2 cut(s) 1538, 3524
BsmFI GGGAC 7 cut(s) 549, 1025, 1051, 1492, 2300, 3371, 3479
BsmI GAATGC 1 cut(s) 2494
Bsp1286I GDGCHC 4 cut(s) 1572, 1712, 1822, 3430
Bsp13I TCCGGA 1 cut(s) 2365
Bsp1407I TGTACA 2 cut(s) 235, 1415
Bsp143I GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
Bsp1720I GCTNAGC 1 cut(s) 1005
Bsp19I CCATGG 2 cut(s) 493, 2772
BspACI CCGC 9 cut(s) 953, 1009, 1094, 1509, 2009, 2492, 2560, 2639, 2741
BspDI ATCGAT 1 cut(s) 781
BspEI TCCGGA 1 cut(s) 2365
BspFNI CGCG 1 cut(s) 2641
BspHI TCATGA 2 cut(s) 972, 2266
BspLI GGNNCC 8 cut(s) 1278, 1819, 1854, 2068, 2496, 2745, 3387, 3495
BspMAI CTGCAG 1 cut(s) 2596
BspOI GCTAGC 1 cut(s) 806
BspPI GGATC 4 cut(s) 1271, 1284, 1628, 1906
BspQI GCTCTTC 2 cut(s) 3113, 3435
BspT107I GGYRCC 3 cut(s) 1817, 1852, 2494
BspTI CTTAAG 2 cut(s) 1655, 3377
BsrFI RCCGGY 1 cut(s) 2000
BsrGI TGTACA 2 cut(s) 235, 1415
BsrI ACTGG 7 cut(s) 493, 868, 943, 1126, 1717, 2098, 2607
BssAI RCCGGY 1 cut(s) 2000
BssECI CCNNGG 7 cut(s) 246, 456, 493, 824, 1602, 2772, 3484
BssMI GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
BssNAI GTATAC 1 cut(s) 1433
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 2 cut(s) 1902, 3454
BssT1I CCWWGG 5 cut(s) 246, 456, 493, 1602, 2772
Bst1107I GTATAC 1 cut(s) 1433
Bst2BI CACGAG 2 cut(s) 1902, 3454
Bst2UI CCWGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
Bst6I CTCTTC 4 cut(s) 1785, 2999, 3113, 3435
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 2 cut(s) 1655, 3377
BstAPI GCANNNNNTGC 6 cut(s) 911, 2360, 2519, 2588, 2798, 2807
BstAUI TGTACA 2 cut(s) 235, 1415
BstC8I GCNNGC 9 cut(s) 277, 440, 804, 1096, 2116, 2154, 2799, 2955, 3006
BstDSI CCRYGG 2 cut(s) 493, 2772
BstFNI CGCG 1 cut(s) 2641
BstH2I RGCGCY 2 cut(s) 76, 182
BstHHI GCGC 4 cut(s) 75, 181, 1155, 3062
BstKTI GATC 8 cut(s) 381, 817, 851, 1279, 1636, 1901, 2101, 2272
BstMAI GTCTC 6 cut(s) 1538, 1732, 2207, 2255, 2629, 3524
BstMBI GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
BstNI CCWGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
BstNSI RCATGY 4 cut(s) 279, 895, 2801, 3148
BstSCI CCNGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
BstSFI CTRYAG 3 cut(s) 522, 1365, 2592
BstSLI GKGCMC 3 cut(s) 1572, 1712, 1822
BstUI CGCG 1 cut(s) 2641
BstX2I RGATCY 3 cut(s) 378, 1276, 1898
BstXI CCANNNNNNTGG 1 cut(s) 1963
BstYI RGATCY 3 cut(s) 378, 1276, 1898
BstZ17I GTATAC 1 cut(s) 1433
Bsu15I ATCGAT 1 cut(s) 781
BsuI GTATCC 1 cut(s) 107
BsuTUI ATCGAT 1 cut(s) 781
BtgI CCRYGG 2 cut(s) 493, 2772
BtrI CACGTC 3 cut(s) 746, 1403, 3011
BtsI GCAGTG 3 cut(s) 204, 962, 1242
Cac8I GCNNGC 9 cut(s) 277, 440, 804, 1096, 2116, 2154, 2799, 2955, 3006
CaiI CAGNNNCTG 3 cut(s) 2045, 2653, 2663
CciI TCATGA 2 cut(s) 972, 2266
CfoI GCGC 4 cut(s) 75, 181, 1155, 3062
Cfr10I RCCGGY 1 cut(s) 2000
Cfr13I GGNCC 7 cut(s) 213, 857, 2067, 2168, 2464, 3385, 3493
ClaI ATCGAT 1 cut(s) 781
CseI GACGC 2 cut(s) 158, 2639
Csp6I GTAC 9 cut(s) 236, 320, 406, 486, 881, 1416, 1533, 2844, 3439
CviQI GTAC 9 cut(s) 236, 320, 406, 486, 881, 1416, 1533, 2844, 3439
DpnI GATC 8 cut(s) 380, 816, 850, 1278, 1635, 1900, 2100, 2271
DpnII GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
DraI TTTAAA 3 cut(s) 480, 1080, 1678
DraIII CACNNNGTG 1 cut(s) 1403
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 4 cut(s) 1785, 2999, 3113, 3435
EarI CTCTTC 4 cut(s) 1785, 2999, 3113, 3435
EciI GGCGGA 1 cut(s) 2549
Eco130I CCWWGG 5 cut(s) 246, 456, 493, 1602, 2772
Eco147I AGGCCT 1 cut(s) 2883
Eco24I GRGCYC 1 cut(s) 3430
Eco32I GATATC 1 cut(s) 2202
Eco47I GGWCC 5 cut(s) 213, 857, 2067, 3385, 3493
Eco57I CTGAAG 2 cut(s) 376, 522
EcoO109I RGGNCCY 2 cut(s) 2067, 3493
EcoRI GAATTC 1 cut(s) 1502
EcoRII CCWGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
EcoRV GATATC 1 cut(s) 2202
EcoT14I CCWWGG 5 cut(s) 246, 456, 493, 1602, 2772
EcoT22I ATGCAT 2 cut(s) 277, 2803
EcoT38I GRGCYC 1 cut(s) 3430
ErhI CCWWGG 5 cut(s) 246, 456, 493, 1602, 2772
Esp3I CGTCTC 2 cut(s) 1538, 3524
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 3463, 3495
FaqI GGGAC 7 cut(s) 549, 1025, 1051, 1492, 2300, 3371, 3479
FauI CCCGC 2 cut(s) 1002, 1087
FauNDI CATATG 2 cut(s) 2338, 2905
FbaI TGATCA 1 cut(s) 2098
FblI GTMKAC 4 cut(s) 219, 947, 1432, 1840
FriOI GRGCYC 1 cut(s) 3430
FspAI RTGCGCAY 1 cut(s) 1154
FspBI CTAG 7 cut(s) 132, 803, 1284, 2165, 2879, 2942, 3083
FspI TGCGCA 1 cut(s) 1154
GlaI GCGC 4 cut(s) 74, 180, 1154, 3061
GsaI CCCAGC 2 cut(s) 293, 1198
GsuI CTGGAG 4 cut(s) 885, 1044, 2484, 3212
HaeII RGCGCY 2 cut(s) 76, 182
HapII CCGG 3 cut(s) 303, 2001, 2366
HgaI GACGC 2 cut(s) 158, 2639
HhaI GCGC 4 cut(s) 75, 181, 1155, 3062
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 4 cut(s) 73, 179, 1153, 3060
HinP1I GCGC 4 cut(s) 73, 179, 1153, 3060
HincII GTYRAC 3 cut(s) 220, 702, 3127
HindII GTYRAC 3 cut(s) 220, 702, 3127
HindIII AAGCTT 6 cut(s) 338, 440, 1298, 1960, 2103, 2756
HpaII CCGG 3 cut(s) 303, 2001, 2366
Hpy99I CGWCG 4 cut(s) 152, 221, 1404, 2213
HpyAV CCTTC 8 cut(s) 19, 418, 613, 955, 1684, 1807, 2403, 3277
HpyCH4IV ACGT 4 cut(s) 745, 1402, 3010, 3517
HpySE526I ACGT 4 cut(s) 745, 1402, 3010, 3517
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 4 cut(s) 73, 179, 1153, 3060
Kpn2I TCCGGA 1 cut(s) 2365
Ksp22I TGATCA 1 cut(s) 2098
Kzo9I GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
LguI GCTCTTC 2 cut(s) 3113, 3435
LmnI GCTCC 8 cut(s) 983, 1671, 2368, 2368, 2450, 2749, 2815, 3231
MaeI CTAG 7 cut(s) 132, 803, 1284, 2165, 2879, 2942, 3083
MaeII ACGT 4 cut(s) 745, 1402, 3010, 3517
MaeIII GTNAC 4 cut(s) 470, 1180, 2851, 3449
MalI GATC 8 cut(s) 380, 816, 850, 1278, 1635, 1900, 2100, 2271
MboI GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
MfeI CAATTG 3 cut(s) 226, 840, 2748
MflI RGATCY 3 cut(s) 378, 1276, 1898
MhlI GDGCHC 4 cut(s) 1572, 1712, 1822, 3430
MlsI TGGCCA 1 cut(s) 492
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 8 cut(s) 707, 721, 953, 1836, 2257, 2337, 3164, 3365
MmeI TCCRAC 2 cut(s) 884, 2428
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 2 cut(s) 277, 2803
MroI TCCGGA 1 cut(s) 2365
MroXI GAANNNNTTC 3 cut(s) 930, 1425, 1830
MscI TGGCCA 1 cut(s) 492
MslI CAYNNNNRTG 6 cut(s) 125, 783, 1850, 1943, 2297, 2422
Msp20I TGGCCA 1 cut(s) 492
MspA1I CMGCKG 4 cut(s) 1194, 2630, 2660, 2981
MspCI CTTAAG 2 cut(s) 1655, 3377
MspI CCGG 3 cut(s) 303, 2001, 2366
MspR9I CCNGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
MunI CAATTG 3 cut(s) 226, 840, 2748
Mva1269I GAATGC 1 cut(s) 2494
MvaI CCWGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
MvnI CGCG 1 cut(s) 2641
NcoI CCATGG 2 cut(s) 493, 2772
NdeI CATATG 2 cut(s) 2338, 2905
NdeII GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
NheI GCTAGC 1 cut(s) 802
NlaIV GGNNCC 8 cut(s) 1278, 1819, 1854, 2068, 2496, 2745, 3387, 3495
NmuCI GTSAC 2 cut(s) 1180, 2851
NsbI TGCGCA 1 cut(s) 1154
NsiI ATGCAT 2 cut(s) 277, 2803
NspI RCATGY 4 cut(s) 279, 895, 2801, 3148
OliI CACNNNNGTG 2 cut(s) 125, 1850
PaeI GCATGC 2 cut(s) 279, 2801
PagI TCATGA 2 cut(s) 972, 2266
PceI AGGCCT 1 cut(s) 2883
PciSI GCTCTTC 2 cut(s) 3113, 3435
PctI GAATGC 1 cut(s) 2494
PdmI GAANNNNTTC 3 cut(s) 930, 1425, 1830
PfeI GAWTC 4 cut(s) 541, 1336, 2036, 2224
PflFI GACNNNGTC 1 cut(s) 3516
PfoI TCCNGGA 1 cut(s) 3500
PleI GAGTC 8 cut(s) 706, 721, 952, 1836, 2257, 2336, 3164, 3365
PpsI GAGTC 8 cut(s) 706, 721, 952, 1836, 2257, 2336, 3164, 3365
PpuMI RGGWCCY 2 cut(s) 2067, 3493
PshBI ATTAAT 3 cut(s) 578, 2159, 2420
Psp5II RGGWCCY 2 cut(s) 2067, 3493
Psp6I CCWGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
PspFI CCCAGC 2 cut(s) 289, 1194
PspGI CCWGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
PspN4I GGNNCC 8 cut(s) 1278, 1819, 1854, 2068, 2496, 2745, 3387, 3495
PspPI GGNCC 7 cut(s) 213, 857, 2067, 2168, 2464, 3385, 3493
PspPPI RGGWCCY 2 cut(s) 2067, 3493
PstI CTGCAG 1 cut(s) 2596
PstNI CAGNNNCTG 3 cut(s) 2045, 2653, 2663
PsuI RGATCY 3 cut(s) 378, 1276, 1898
PsyI GACNNNGTC 1 cut(s) 3516
PvuII CAGCTG 4 cut(s) 1194, 2630, 2660, 2981
RsaI GTAC 9 cut(s) 237, 321, 407, 487, 882, 1417, 1534, 2845, 3440
RsaNI GTAC 9 cut(s) 236, 320, 406, 486, 881, 1416, 1533, 2844, 3439
RseI CAYNNNNRTG 6 cut(s) 125, 783, 1850, 1943, 2297, 2422
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 2 cut(s) 3113, 3435
Sau3AI GATC 8 cut(s) 378, 814, 848, 1276, 1633, 1898, 2098, 2269
Sau96I GGNCC 7 cut(s) 213, 857, 2067, 2168, 2464, 3385, 3493
ScaI AGTACT 2 cut(s) 487, 2845
SchI GAGTC 8 cut(s) 707, 721, 953, 1836, 2257, 2337, 3164, 3365
ScrFI CCNGG 6 cut(s) 266, 825, 2894, 3230, 3486, 3502
SduI GDGCHC 4 cut(s) 1572, 1712, 1822, 3430
SfcI CTRYAG 3 cut(s) 522, 1365, 2592
SinI GGWCC 5 cut(s) 213, 857, 2067, 3385, 3493
SmiMI CAYNNNNRTG 6 cut(s) 125, 783, 1850, 1943, 2297, 2422
SmlI CTYRAG 5 cut(s) 1271, 1655, 2130, 3377, 3442
SmoI CTYRAG 5 cut(s) 1271, 1655, 2130, 3377, 3442
SphI GCATGC 2 cut(s) 279, 2801
SseBI AGGCCT 1 cut(s) 2883
SsiI CCGC 9 cut(s) 953, 1009, 1094, 1509, 2009, 2492, 2560, 2639, 2741
SspI AATATT 2 cut(s) 653, 1410
SspMI CTAG 7 cut(s) 132, 803, 1284, 2165, 2879, 2942, 3083
StuI AGGCCT 1 cut(s) 2883
StyD4I CCNGG 6 cut(s) 264, 823, 2892, 3228, 3484, 3500
StyI CCWWGG 5 cut(s) 246, 456, 493, 1602, 2772
TaiI ACGT 4 cut(s) 748, 1405, 3013, 3520
TaqI TCGA 6 cut(s) 5, 78, 219, 781, 1452, 1641
TatI WGTACW 5 cut(s) 235, 485, 1415, 2843, 3438
TauI GCSGC 1 cut(s) 2744
TfiI GAWTC 4 cut(s) 541, 1336, 2036, 2224
TseFI GTSAC 2 cut(s) 1180, 2851
Tsp45I GTSAC 2 cut(s) 1180, 2851
TspGWI ACGGA 5 cut(s) 205, 323, 553, 1550, 1562
Tth111I GACNNNGTC 1 cut(s) 3516
Vha464I CTTAAG 2 cut(s) 1655, 3377
VpaK11BI GGWCC 5 cut(s) 213, 857, 2067, 3385, 3493
VspI ATTAAT 3 cut(s) 578, 2159, 2420
XapI RAATTY 8 cut(s) 296, 1502, 1581, 1795, 1883, 1994, 2874, 3361
XceI RCATGY 4 cut(s) 279, 895, 2801, 3148
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XmiI GTMKAC 4 cut(s) 219, 947, 1432, 1840
XmnI GAANNNNTTC 3 cut(s) 930, 1425, 1830
XspI CTAG 7 cut(s) 132, 803, 1284, 2165, 2879, 2942, 3083
ZrmI AGTACT 2 cut(s) 487, 2845
Zsp2I ATGCAT 2 cut(s) 277, 2803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.