FvH4_5g35350

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018449
Physical Location & Seq
Reverse (-)
25890889 .. 25891680
792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35350.t1

Sequence Viewer

Length: 792 bp
ATGGATTCGCAGGGTATGGTGGTCAATCCCTTGCGGGTGCAGCGGTTGAACTTCTCCGTGGAACAAGTCGAACCCATCGACACACCAGGTCTGCAAGAAGCACCTTCACCGGCTCGTCTTCGAGTCCAGTTTCTCTACAATACCCAGCATCGAATCTTAGTCAGTACATCATCTACCCGGAGCATAGACTCCCTCCCATCATCACTACAAGAAACCGGCTGGCCTACCGTAATCCACGATTATGAGGACGCCGGGAAGAAACTGTGCGGTGAGTTCGATCTGAACGTGCTTCTGAGTAAGGTTGATGAGCTGGGTGCAAATCTTTCTCCATTTCTTTCGCAATTTAGAATCGAGGAAGGCAGCAAGGATCACGCCCGAATAGTAGGTGAGGTTAAGCGTGTGGGGATGGGAATTGGTCCGGAGAGGAAGAATCAAGGTTTGTTTTCCTTGCAAGTTTCGATTGCACGAGTCTTCACCACATTTCATCGTTGCAAGAGGAATATTACTGAGCCGGTTGTAAAGGGGGAAGAGATTATGGTTTGGGTTATAGGGGCGGGGAGGAGGAGGGTTAAGGTTCCAGGGGAAGAGAAATGTAGTGTGTGCTTGGAAAAGTTTAGGATTAGGTCTTGCGTTGCCATGCCTTGCTCACATGTGTTTCATACCAAATGCCTCGAGACATGGCTGCAGGGACGGAATAAACGCTCTTGTCCTCTTTGTCGATCTGAGATGCCTACTCGAGTTGGACCGTCACCGATTGCAGATATGTACCATGTTGGTTTTATCCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

264

Amino Acids

29.55

Weight (kDa)

9.0

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 195 - 240 3.2e-08 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 195 - 243 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 197 - 240 1e-11 Ring finger domain
zf-C3HC4_2 PF13923 197 - 239 2.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 197 - 240 3.1e-06 zinc-RING finger domain
zf-C3HC4 PF00097 198 - 239 9.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 198 - 224 6.4e-07 RING-like zinc finger
zf-RING_UBOX PF13445 198 - 237 1.3e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g35350 FvH4_5g35361
rosa_chinensis RchiOBHm_Chr7g0236701
rosa_laevigata RLG00000001067
rosa_multiflora Rmu_sc0002536.1_g000017
rosa_roxburghii Rroxscaffold_3G00224950
rosa_rugosa Rorug07G0298300
rosa_samantha Rh7AG453700 Rh7CG472200 Rh7DG441100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 4 cut(s) 34, 43, 267, 554
AclWI GGATC 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 166, 767
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 85, 577
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 375
Ama87I CYCGRG 2 cut(s) 671, 735
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 3 cut(s) 40, 360, 682
AspS9I GGNCC 2 cut(s) 416, 743
AsuC2I CCSGG 2 cut(s) 178, 253
AsuHPI GGTGA 5 cut(s) 99, 281, 398, 466, 741
AvaI CYCGRG 2 cut(s) 671, 735
AvaII GGWCC 2 cut(s) 416, 743
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 110, 463
BbvI GCAGC 3 cut(s) 52, 372, 669
BccI CCATC 3 cut(s) 83, 205, 400
BciT130I CCWGG 2 cut(s) 87, 579
BcnI CCSGG 2 cut(s) 178, 253
BcoDI GTCTC 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 683
BisI GCNGC 3 cut(s) 41, 361, 683
BlsI GCNGC 3 cut(s) 42, 362, 684
Bme1390I CCNGG 4 cut(s) 87, 178, 253, 579
Bme18I GGWCC 2 cut(s) 416, 743
BmeT110I CYCGRG 2 cut(s) 671, 735
BmgT120I GGNCC 2 cut(s) 416, 743
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 4 cut(s) 87, 178, 253, 579
BmsI GCATC 2 cut(s) 157, 717
BpiI GAAGAC 2 cut(s) 110, 463
BpuMI CCSGG 2 cut(s) 178, 253
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 57, 578
BsaWI WCCGGW 1 cut(s) 418
Bse118I RCCGGY 3 cut(s) 109, 215, 511
Bse1I ACTGG 1 cut(s) 127
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 2 cut(s) 87, 579
BseDI CCNNGG 2 cut(s) 57, 578
BseGI GGATG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 284, 498, 714
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 574, 577
BseXI GCAGC 3 cut(s) 52, 372, 669
BseYI CCCAGC 2 cut(s) 144, 310
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 223
BsiHKCI CYCGRG 2 cut(s) 671, 735
BsiSI CCGG 6 cut(s) 110, 178, 216, 252, 419, 512
BslFI GGGAC 1 cut(s) 702
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 2 cut(s) 671, 735
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 3 cut(s) 277, 367, 719
BspACI CCGC 4 cut(s) 34, 43, 267, 554
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 3 cut(s) 285, 499, 715
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 576
BspMAI CTGCAG 1 cut(s) 687
BspPI GGATC 1 cut(s) 375
BsrFI RCCGGY 3 cut(s) 109, 215, 511
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 3 cut(s) 109, 215, 511
BssECI CCNNGG 2 cut(s) 57, 578
BssMI GATC 3 cut(s) 277, 367, 719
BssNI GRCGYC 1 cut(s) 249
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 87, 579
Bst4CI ACNGT 3 cut(s) 229, 264, 747
Bst6I CTCTTC 2 cut(s) 522, 579
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 4 cut(s) 157, 293, 507, 723
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 411
BstKTI GATC 3 cut(s) 280, 370, 722
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 3 cut(s) 277, 367, 719
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 2 cut(s) 87, 579
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 4 cut(s) 85, 176, 251, 577
BstSFI CTRYAG 1 cut(s) 683
BstV1I GCAGC 3 cut(s) 52, 372, 669
BstV2I GAAGAC 2 cut(s) 110, 463
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 221
Cfr10I RCCGGY 3 cut(s) 109, 215, 511
Cfr13I GGNCC 2 cut(s) 416, 743
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 2 cut(s) 165, 766
CviAII CATG 4 cut(s) 637, 650, 678, 770
CviJI RGCY 6 cut(s) 113, 219, 223, 310, 511, 682
CviKI_1 RGCY 6 cut(s) 113, 219, 223, 310, 511, 682
CviQI GTAC 2 cut(s) 165, 766
DdeI CTNAG 4 cut(s) 157, 293, 507, 723
DpnI GATC 3 cut(s) 279, 369, 721
DpnII GATC 3 cut(s) 277, 367, 719
Eam1104I CTCTTC 2 cut(s) 522, 579
EarI CTCTTC 2 cut(s) 522, 579
Eco47I GGWCC 2 cut(s) 416, 743
Eco88I CYCGRG 2 cut(s) 671, 735
EcoRII CCWGG 2 cut(s) 85, 577
FaeI CATG 4 cut(s) 640, 653, 681, 773
FaqI GGGAC 1 cut(s) 702
FatI CATG 4 cut(s) 636, 649, 677, 769
FauI CCCGC 2 cut(s) 27, 547
Fnu4HI GCNGC 3 cut(s) 41, 361, 683
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 41, 361, 683
GluI GCNGC 3 cut(s) 41, 361, 683
GsaI CCCAGC 2 cut(s) 148, 314
HaeIII GGCC 1 cut(s) 223
HapII CCGG 6 cut(s) 110, 178, 216, 252, 419, 512
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 4 cut(s) 640, 653, 681, 773
HinfI GANTC 7 cut(s) 5, 123, 153, 188, 348, 430, 468
HpaII CCGG 6 cut(s) 110, 178, 216, 252, 419, 512
HphI GGTGA 5 cut(s) 99, 281, 398, 466, 741
Hpy188I TCNGA 3 cut(s) 282, 294, 724
Hpy188III TCNNGA 2 cut(s) 419, 673
HpyAV CCTTC 2 cut(s) 114, 350
HpyCH4III ACNGT 3 cut(s) 229, 264, 747
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 8 cut(s) 40, 94, 317, 451, 464, 492, 685, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 4 cut(s) 157, 293, 507, 723
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 4 cut(s) 640, 653, 681, 773
Kpn2I TCCGGA 1 cut(s) 418
Kzo9I GATC 3 cut(s) 277, 367, 719
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 3 cut(s) 52, 372, 669
LweI GCATC 2 cut(s) 157, 717
MabI ACCWGGT 1 cut(s) 85
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 747
MalI GATC 3 cut(s) 279, 369, 721
MboI GATC 3 cut(s) 277, 367, 719
MboII GAAGA 6 cut(s) 110, 268, 439, 463, 539, 596
MluCI AATT 2 cut(s) 341, 411
MlyI GAGTC 3 cut(s) 132, 182, 477
MmeI TCCRAC 1 cut(s) 721
MroI TCCGGA 1 cut(s) 418
MseI TTAA 3 cut(s) 393, 570, 790
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 6 cut(s) 110, 178, 216, 252, 419, 512
MspR9I CCNGG 4 cut(s) 87, 178, 253, 579
MvaI CCWGG 2 cut(s) 87, 579
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 2 cut(s) 178, 253
NdeII GATC 3 cut(s) 277, 367, 719
NlaIII CATG 4 cut(s) 640, 653, 681, 773
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 747
NspI RCATGY 1 cut(s) 653
PaeR7I CTCGAG 2 cut(s) 671, 735
PciI ACATGT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 282
PfeI GAWTC 4 cut(s) 5, 153, 348, 430
PkrI GCNGC 3 cut(s) 42, 362, 684
PleI GAGTC 3 cut(s) 131, 182, 476
PpsI GAGTC 3 cut(s) 131, 182, 476
PscI ACATGT 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 85, 577
PspFI CCCAGC 2 cut(s) 144, 310
PspGI CCWGG 2 cut(s) 85, 577
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 2 cut(s) 416, 743
PspXI VCTCGAGB 1 cut(s) 735
PstI CTGCAG 1 cut(s) 687
RsaI GTAC 2 cut(s) 166, 767
RsaNI GTAC 2 cut(s) 165, 766
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 393, 570, 790
SatI GCNGC 3 cut(s) 41, 361, 683
Sau3AI GATC 3 cut(s) 277, 367, 719
Sau96I GGNCC 2 cut(s) 416, 743
SchI GAGTC 3 cut(s) 132, 182, 477
ScrFI CCNGG 4 cut(s) 87, 178, 253, 579
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 2 cut(s) 157, 717
SfcI CTRYAG 1 cut(s) 683
Sfr274I CTCGAG 2 cut(s) 671, 735
SinI GGWCC 2 cut(s) 416, 743
SlaI CTCGAG 2 cut(s) 671, 735
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 671, 735
SmoI CTYRAG 2 cut(s) 671, 735
Sse9I AATT 2 cut(s) 341, 411
SsiI CCGC 4 cut(s) 34, 43, 267, 554
SspI AATATT 1 cut(s) 502
StyD4I CCNGG 4 cut(s) 85, 176, 251, 577
TaaI ACNGT 3 cut(s) 229, 264, 747
TaiI ACGT 1 cut(s) 288
TasI AATT 2 cut(s) 341, 411
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 4 cut(s) 5, 153, 348, 430
Tru1I TTAA 3 cut(s) 393, 570, 790
Tru9I TTAA 3 cut(s) 393, 570, 790
TseFI GTSAC 1 cut(s) 747
TseI GCWGC 3 cut(s) 40, 360, 682
Tsp45I GTSAC 1 cut(s) 747
TspDTI ATGAA 2 cut(s) 473, 647
TspGWI ACGGA 2 cut(s) 46, 706
VpaK11BI GGWCC 2 cut(s) 416, 743
XceI RCATGY 1 cut(s) 653
XhoI CTCGAG 2 cut(s) 671, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.