Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018449

Physical Location & Seq

Genomic Coordinates Reverse (-)

61383424 .. 61383687

Gene Structure 264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCCGGTTTGGGACGTTATAGAGGGGGAAGAGATAAGGGTTAGAGTTCCAGGGGAAGAGATCTGTAGTGTGTGCTTGGAAGAGTTTAGGAGTAGGCCGCCTTGCGTTGCCATGCCTTGCTCACATGTGTTTCATAGCGAATGCATTCGGACATGGCTGGGACGGCGGAATGAACGCTCTTGTCCTCTTTGCAGATTTCAGATGCCTACTATAGTTGAACCATCCATCACATATATGTTCCATCTTGGGCTTAATCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010154 GO:0010200 GO:0010243 GO:0010498 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022412 GO:0022414 GO:0030154 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051603 GO:0051865 GO:0060560 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0097305 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1117 zf-RING_2 zinc_ribbon_9

Protein Analysis

87

Amino Acids

10.09

Weight (kDa)

5.87

Isoelectric Point (pI)

94.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	16 - 65	5.3e-10	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	19 - 66	6.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	22 - 65	6.9e-14	Ring finger domain
zf-RING_UBOX	PF13445	22 - 62	1.3e-10	RING-type zinc-finger
zf-C3HC4_2	PF13923	22 - 64	3e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	22 - 64	3.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	22 - 49	1.1e-08	RING-like zinc finger
zf-RING_5	PF14634	22 - 65	1.3e-08	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018449)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35350 FvH4_5g35361
rosa_chinensis	RchiOBHm_Chr7g0236701
rosa_laevigata	RLG00000001067
rosa_multiflora	Rmu_sc0002536.1_g000017
rosa_roxburghii	Rroxscaffold_3G00224950
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh7AG453700 Rh7CG472200 Rh7DG441100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 166
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	144
BccI	CCATC	3 cut(s)	229, 233, 249
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	64, 210
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	26, 174
BsmFI	GGGAC	2 cut(s)	26, 174
BsmI	GAATGC	2 cut(s)	144, 146
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	98, 166
BspANI	GGCC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	3 cut(s)	24, 51, 75
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	64, 210
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	4
CviAII	CATG	3 cut(s)	112, 125, 153
CviJI	RGCY	3 cut(s)	97, 157, 250
CviKI_1	RGCY	3 cut(s)	97, 157, 250
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	24, 51, 75
EarI	CTCTTC	3 cut(s)	24, 51, 75
EciI	GGCGGA	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	146
FaeI	CATG	3 cut(s)	115, 128, 156
FaiI	YATR	9 cut(s)	20, 113, 126, 135, 154, 212, 232, 234, 236
FaqI	GGGAC	2 cut(s)	26, 174
FatI	CATG	3 cut(s)	111, 124, 152
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	115, 128, 156
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	2 cut(s)	150, 201
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	144, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	115, 128, 156
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	18, 36, 63, 143
LweI	GCATC	1 cut(s)	192
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	41, 68, 92
MflI	RGATCY	1 cut(s)	60
MnlI	CCTC	2 cut(s)	16, 195
Mph1103I	ATGCAT	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	252, 262
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	2 cut(s)	144, 146
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	115, 128, 156
NsiI	ATGCAT	1 cut(s)	146
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	2 cut(s)	144, 146
PdmI	GAANNNNTTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	252, 262
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	192
SfcI	CTRYAG	2 cut(s)	64, 210
SmiMI	CAYNNNNRTG	1 cut(s)	233
SsiI	CCGC	2 cut(s)	98, 166
StyD4I	CCNGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	252, 262
Tru9I	TTAA	2 cut(s)	252, 262
TspDTI	ATGAA	2 cut(s)	122, 186
XceI	RCATGY	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.