Rh7DG441100

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018449
Physical Location & Seq
Reverse (-)
62652176 .. 62653101
926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG441100.1

Sequence Viewer

Length: 843 bp
ATGGATTCGCAGGATGTGGTGGTCACTTCCCGGCGGGAGGAGCGGTTCAGCGCCTCCGTGGAACAAGTCGAACCCATCTACCCACCAGGTCTGGAACAAGCACCTTCACCTGCTCGACTTCAAGTCCACTTTGTCTACATTACCCAGCACCAAATCTTCTTCAGTTCATGGTCTACCCGGAGCATATACTCCCTCCCATCATCACCGGAAGAAGACTGCCCAACCCTGATCCACCATTATGAGGACCCCGTGATGAAACTGTGTGGTGAATTCGATCTGCAAGTGCTACTGAGTACGGATGACGAACTGGGTGCAAATTTTTCACCGTTTCTTTCGCAATTTGAAATCACGCAAGGCAGCGAGGAGCACACCCGAATATTGGGTGAGGTTAAGCGTGTGGGCAGGGAATTTGGCCCGGAGAGGAAGAATCAAGGGTTATTTGCCTTGCAAGTTTCGATTTTAAGAGTATACACGACATATCGTTGCGAGAGTAATCCTAAGCCGGATGTAGAGGGGGAAGAGATGTCGGATTGGGATGTTATAGAGGGGGAAGAGATAACCGACGTCATAGAGGGGGGAGAGATGCCGGTTTGGGACGTTATAGAGGGGGAAGAGATGAGGGTTAGAGTTCCAGGGGAAGAGATCTGTAGTGTGTGCTTGAAAGAGTTTAGGAGTTGCCCGCCTTGCATTGCCATGCCTTGCTCACATGTGTTTCATAGCGAATGCATTCGGACATGGCTGGGACGGAATGAACGCTCTTGTCCTCTTTGCAGATTTCAGTTGCCTACTATAGTTGAACCATCCTTCACATATATGTTCCATCTTGGGCTTAATCTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

280

Amino Acids

32.0

Weight (kDa)

4.66

Isoelectric Point (pI)

70.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 211 - 258 1.3e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 216 - 258 2.3e-11 Ring finger domain
zf-C3HC4 PF00097 216 - 257 8.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 216 - 243 1.1e-06 RING-like zinc finger
zf-C3HC4_2 PF13923 216 - 257 8.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 216 - 255 3.5e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g35350 FvH4_5g35361
rosa_chinensis RchiOBHm_Chr7g0236701
rosa_laevigata RLG00000001067
rosa_multiflora Rmu_sc0002536.1_g000017
rosa_roxburghii Rroxscaffold_3G00224950
rosa_rugosa Rorug07G0298300
rosa_samantha Rh7AG453700 Rh7CG472200 Rh7DG441100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 43
AccI GTMKAC 3 cut(s) 135, 173, 468
AciI CCGC 3 cut(s) 34, 43, 680
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 3 cut(s) 269, 316, 407
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 37, 241, 379
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 4 cut(s) 122, 344, 661, 797
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 2 cut(s) 85, 631
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 1 cut(s) 223
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 3 cut(s) 269, 316, 407
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 244, 413
AsuC2I CCSGG 3 cut(s) 31, 178, 416
AsuHPI GGTGA 5 cut(s) 99, 195, 278, 315, 395
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 369
BccI CCATC 4 cut(s) 83, 205, 808, 828
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 2 cut(s) 87, 633
BcnI CCSGG 3 cut(s) 31, 178, 416
BfmI CTRYAG 2 cut(s) 646, 789
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 1 cut(s) 642
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 5 cut(s) 31, 87, 178, 416, 633
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 244, 413
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 5 cut(s) 31, 87, 178, 416, 633
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 573
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 3 cut(s) 31, 178, 416
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 57, 632
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 241, 379
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 687
BseBI CCWGG 2 cut(s) 87, 633
BseDI CCNNGG 2 cut(s) 57, 632
BseGI GGATG 5 cut(s) 19, 304, 511, 541, 800
BseLI CCNNNNNNNGG 3 cut(s) 37, 241, 379
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 53, 377
BseXI GCAGC 1 cut(s) 369
BseYI CCCAGC 2 cut(s) 144, 739
BshFI GGCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
BslFI GGGAC 2 cut(s) 608, 756
BslI CCNNNNNNNGG 3 cut(s) 37, 241, 379
BsmFI GGGAC 2 cut(s) 608, 756
BsmI GAATGC 2 cut(s) 726, 728
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 228, 274, 642
BspACI CCGC 3 cut(s) 34, 43, 680
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 246
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 586
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 586
BssECI CCNNGG 2 cut(s) 57, 632
BssMI GATC 3 cut(s) 228, 274, 642
BssNAI GTATAC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 469
Bst2UI CCWGG 2 cut(s) 87, 633
Bst4CI ACNGT 2 cut(s) 261, 327
Bst6I CTCTTC 4 cut(s) 513, 546, 606, 633
BstACI GRCGYC 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 2 cut(s) 290, 498
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 19, 304, 511, 541, 800
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 231, 277, 645
BstMBI GATC 3 cut(s) 228, 274, 642
BstMWI GCNNNNNNNGC 2 cut(s) 40, 684
BstNI CCWGG 2 cut(s) 87, 633
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 5 cut(s) 29, 85, 176, 414, 631
BstSFI CTRYAG 2 cut(s) 646, 789
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
BstZ17I GTATAC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 5 cut(s) 19, 304, 511, 541, 800
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 680
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 586
Cfr13I GGNCC 2 cut(s) 244, 413
CsiI ACCWGGT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 294
CviAII CATG 4 cut(s) 168, 694, 707, 735
CviJI RGCY 4 cut(s) 414, 502, 739, 829
CviKI_1 RGCY 4 cut(s) 414, 502, 739, 829
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 290, 498
DpnI GATC 3 cut(s) 230, 276, 644
DpnII GATC 3 cut(s) 228, 274, 642
DriI GACNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 4 cut(s) 513, 546, 606, 633
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 4 cut(s) 513, 546, 606, 633
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 85, 631
EcoT22I ATGCAT 1 cut(s) 728
FaeI CATG 4 cut(s) 171, 697, 710, 738
FaqI GGGAC 2 cut(s) 608, 756
FatI CATG 4 cut(s) 167, 693, 706, 734
FauI CCCGC 2 cut(s) 27, 687
FblI GTMKAC 3 cut(s) 135, 173, 468
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 5 cut(s) 26, 311, 518, 548, 787
Fsp4HI GCNGC 1 cut(s) 358
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 358
GsaI CCCAGC 2 cut(s) 148, 743
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 414
HapII CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 4 cut(s) 171, 697, 710, 738
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 5, 427
HpaII CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
HphI GGTGA 5 cut(s) 99, 195, 278, 315, 395
Hpy166II GTNNAC 4 cut(s) 127, 136, 174, 469
Hpy188I TCNGA 2 cut(s) 529, 732
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 4 cut(s) 127, 136, 174, 469
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 114, 814
HpyCH4III ACNGT 2 cut(s) 261, 327
HpyCH4IV ACGT 2 cut(s) 564, 597
HpyCH4V TGCA 6 cut(s) 280, 314, 448, 687, 726, 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 684
HpyF3I CTNAG 2 cut(s) 290, 498
HpySE526I ACGT 2 cut(s) 564, 597
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 4 cut(s) 171, 697, 710, 738
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 228, 274, 642
LmnI GCTCC 3 cut(s) 40, 180, 364
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 573
MabI ACCWGGT 1 cut(s) 85
MaeII ACGT 2 cut(s) 564, 597
MaeIII GTNAC 1 cut(s) 22
MalI GATC 3 cut(s) 230, 276, 644
MbiI CCGCTC 1 cut(s) 43
MboI GATC 3 cut(s) 228, 274, 642
MboII GAAGA 9 cut(s) 148, 151, 221, 224, 436, 530, 563, 623, 650
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 269, 316, 338, 407
MmeI TCCRAC 1 cut(s) 507
Mph1103I ATGCAT 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 390, 461, 831, 841
MslI CAYNNNNRTG 3 cut(s) 237, 692, 812
MspI CCGG 6 cut(s) 31, 178, 206, 416, 503, 587
MspR9I CCNGG 5 cut(s) 31, 87, 178, 416, 633
Mva1269I GAATGC 2 cut(s) 726, 728
MvaI CCWGG 2 cut(s) 87, 633
MwoI GCNNNNNNNGC 2 cut(s) 40, 684
NciI CCSGG 3 cut(s) 31, 178, 416
NdeII GATC 3 cut(s) 228, 274, 642
NlaIII CATG 4 cut(s) 171, 697, 710, 738
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 706
PctI GAATGC 2 cut(s) 726, 728
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 2 cut(s) 5, 427
PkrI GCNGC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 244
PscI ACATGT 1 cut(s) 706
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 85, 631
PspFI CCCAGC 2 cut(s) 144, 739
PspGI CCWGG 2 cut(s) 85, 631
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 244, 413
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 642
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 3 cut(s) 237, 692, 812
SaqAI TTAA 4 cut(s) 390, 461, 831, 841
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 3 cut(s) 228, 274, 642
Sau96I GGNCC 2 cut(s) 244, 413
ScrFI CCNGG 5 cut(s) 31, 87, 178, 416, 633
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 91, 106, 112, 390, 567, 600
SexAI ACCWGGT 1 cut(s) 85
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 2 cut(s) 646, 789
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 237, 692, 812
Sse9I AATT 4 cut(s) 269, 316, 338, 407
SsiI CCGC 3 cut(s) 34, 43, 680
SspI AATATT 1 cut(s) 378
StyD4I CCNGG 5 cut(s) 29, 85, 176, 414, 631
TaaI ACNGT 2 cut(s) 261, 327
TaiI ACGT 2 cut(s) 567, 600
TaqI TCGA 4 cut(s) 69, 115, 273, 455
TasI AATT 4 cut(s) 269, 316, 338, 407
TfiI GAWTC 2 cut(s) 5, 427
Tru1I TTAA 4 cut(s) 390, 461, 831, 841
Tru9I TTAA 4 cut(s) 390, 461, 831, 841
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 156, 269, 704, 765
TspGWI ACGGA 3 cut(s) 46, 311, 760
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 3 cut(s) 269, 316, 407
XceI RCATGY 1 cut(s) 710
XmiI GTMKAC 3 cut(s) 135, 173, 468
XmnI GAANNNNTTC 1 cut(s) 726
ZraI GACGTC 1 cut(s) 565
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.