Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Forward (+)

29499406 .. 29502051

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0298300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATTCATTTTGTCATTCTTGTTAGCCGACAAGGAAAGGTGAGGCTGACTAAATGGTTTTCAACCTATTCCCAGAAAGAAAGATCCAAGGTAATGCGGGAATTGAGTGGTATAATACTCAATCGAGGCCCCAAGCTGTGCAACTTCATAGAGTGGAGAGGACTTAAAGTTGTCTATAAAAGATACGCGAGCCTCTATTTCTGTATGTGTATTGACCAAGAAGACAATGAACTGGAGATTCTTGAAATAATTCACCATTACGTTGAGATACTTGATCGATATTTTGGCAGCGTTTGTGAGCTGGATTTGATTTTTAACTTCCATAAGGCTTACTATATACTAGATGAACTTCTACTTGCTGGTGAGCTGCAAGAGTCAAGTAAGAGAGCAATAGGACGAATGATAGCTATACATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCAATAAGCAATTTACTCGCACAAGTTAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

161

Amino Acids

18.91

Weight (kDa)

6.96

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	1 - 140	7.6e-54	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	63, 245, 453
AluBI	AGCT	4 cut(s)	136, 301, 367, 407
AluI	AGCT	4 cut(s)	136, 301, 367, 407
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	127, 444
ApeKI	GCWGC	3 cut(s)	288, 367, 431
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	52, 245, 374
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	300, 354, 418
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BfaI	CTAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	289, 368, 432
BlsI	GCNGC	3 cut(s)	290, 369, 433
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	254
Bsa29I	ATCGAT	2 cut(s)	277, 418
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	237, 447
BseCI	ATCGAT	2 cut(s)	277, 418
BseDI	CCNNGG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	237, 447
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	300, 354, 418
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	129, 446
BshVI	ATCGAT	2 cut(s)	277, 418
BsnI	GGCC	2 cut(s)	129, 446
Bsp143I	GATC	3 cut(s)	83, 274, 415
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	129, 446
BspDI	ATCGAT	2 cut(s)	277, 418
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	237, 447
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	83, 274, 415
BssT1I	CCWWGG	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	86, 277, 418
BstMBI	GATC	3 cut(s)	83, 274, 415
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	300, 354, 418
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu15I	ATCGAT	2 cut(s)	277, 418
BsuRI	GGCC	2 cut(s)	129, 446
BsuTUI	ATCGAT	2 cut(s)	277, 418
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	128
ClaI	ATCGAT	2 cut(s)	277, 418
CviAII	CATG	1 cut(s)	413
DpnI	GATC	3 cut(s)	85, 276, 417
DpnII	GATC	3 cut(s)	83, 274, 415
Eco130I	CCWWGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	416
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	289, 368, 432
Fsp4HI	GCNGC	3 cut(s)	289, 368, 432
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	3 cut(s)	289, 368, 432
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	129, 446
Hin1II	CATG	1 cut(s)	416
HinfI	GANTC	3 cut(s)	4, 238, 374
HphI	GGTGA	3 cut(s)	52, 245, 374
Hpy188III	TCNNGA	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	141, 370
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	83, 274, 415
LpnPI	CCDG	5 cut(s)	86, 218, 287, 345, 460
Lsp1109I	GCAGC	3 cut(s)	300, 354, 418
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	1 cut(s)	261
MalI	GATC	3 cut(s)	85, 276, 417
MboI	GATC	3 cut(s)	83, 274, 415
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	3 cut(s)	101, 249, 460
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	7 cut(s)	36, 119, 152, 203, 421, 433, 436
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	165, 315, 477
MvnI	CGCG	1 cut(s)	188
NdeII	GATC	3 cut(s)	83, 274, 415
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	4, 238
PkrI	GCNGC	3 cut(s)	290, 369, 433
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	165, 315, 477
SatI	GCNGC	3 cut(s)	289, 368, 432
Sau3AI	GATC	3 cut(s)	83, 274, 415
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	383
SetI	ASST	8 cut(s)	42, 68, 93, 138, 264, 303, 369, 409
Sse9I	AATT	3 cut(s)	101, 249, 460
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	124, 277, 418
TasI	AATT	3 cut(s)	101, 249, 460
TfiI	GAWTC	2 cut(s)	4, 238
Tru1I	TTAA	3 cut(s)	165, 315, 477
Tru9I	TTAA	3 cut(s)	165, 315, 477
TseI	GCWGC	3 cut(s)	288, 367, 431
TspDTI	ATGAA	3 cut(s)	136, 243, 360
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.