Rh4CG152000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017015
Physical Location & Seq
Forward (+)
33559265 .. 33559654
390 bp
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UTR
Exon/CDS
Intron
Rh4CG152000.1

Sequence Viewer

Length: 390 bp
ATGGCGGAGGCTACAAAGTCTCCGATCCGATCCCAAATCCTCCATAAGATCCTCCAACTCCCGATCCGATCCCAAGTCCTCATTGCCTTCTCTCTCTCCTCCTCCTACTCTGCTCTCCTCCAATCCTCGCCGATCCACGCGCCGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCGACCATGTCAACACCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGCACAACCCTCCGCCAGTCCGGCTTCCTCCTCCAAGCCATGCAGCAGTCCGCCGGCGAAGAAACATGTGGAAGAACCTGTGGGTCTCCCTTGTTTTCTCAATTTCAGGTTTTCTGGGATTCAAAGTTGGGGACTTTCTCCCCAATTACCTTGGTTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

11.74

Isoelectric Point (pI)

89.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
AccII CGCG 1 cut(s) 140
AciI CCGC 4 cut(s) 5, 143, 239, 277
AclWI GGATC 6 cut(s) 19, 24, 43, 58, 63, 127
AcyI GRCGYC 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 24, 316
AlwI GGATC 6 cut(s) 19, 24, 43, 58, 63, 127
ApeKI GCWGC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 142, 211
BbvI GCAGC 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 24, 316
BglI GCCNNNNNGGC 1 cut(s) 247
BisI GCNGC 2 cut(s) 143, 270
BlsI GCNGC 2 cut(s) 144, 271
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 376
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 6 cut(s) 88, 91, 107, 163, 166, 246
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 247, 280
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 2 cut(s) 24, 316
BsmFI GGGAC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 316
Bsp143I GATC 6 cut(s) 24, 29, 48, 63, 68, 132
BspACI CCGC 4 cut(s) 5, 143, 239, 277
BspFNI CGCG 1 cut(s) 140
BspPI GGATC 6 cut(s) 19, 24, 43, 58, 63, 127
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 6 cut(s) 24, 29, 48, 63, 68, 132
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 376
BstACI GRCGYC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 281
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 2 cut(s) 142, 211
BstKTI GATC 6 cut(s) 27, 32, 51, 66, 71, 135
BstMAI GTCTC 2 cut(s) 24, 316
BstMBI GATC 6 cut(s) 24, 29, 48, 63, 68, 132
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 295
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 281
CfoI GCGC 2 cut(s) 142, 211
Cfr10I RCCGGY 1 cut(s) 279
CseI GACGC 1 cut(s) 171
CviAII CATG 3 cut(s) 185, 266, 292
CviJI RGCY 3 cut(s) 11, 250, 264
CviKI_1 RGCY 3 cut(s) 11, 250, 264
DpnI GATC 6 cut(s) 26, 31, 50, 65, 70, 134
DpnII GATC 6 cut(s) 24, 29, 48, 63, 68, 132
EciI GGCGGA 3 cut(s) 20, 228, 266
Eco130I CCWWGG 1 cut(s) 376
Eco31I GGTCTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 188, 269, 295
FaiI YATR 4 cut(s) 45, 186, 267, 293
FaqI GGGAC 1 cut(s) 371
FatI CATG 3 cut(s) 184, 265, 291
Fnu4HI GCNGC 2 cut(s) 143, 270
Fsp4HI GCNGC 2 cut(s) 143, 270
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 2 cut(s) 141, 210
GluI GCNGC 2 cut(s) 143, 270
HapII CCGG 2 cut(s) 247, 280
HgaI GACGC 1 cut(s) 171
HhaI GCGC 2 cut(s) 142, 211
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 3 cut(s) 188, 269, 295
Hin6I GCGC 2 cut(s) 140, 209
HinP1I GCGC 2 cut(s) 140, 209
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 345
HpaII CCGG 2 cut(s) 247, 280
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 24, 29, 68, 181
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 188, 269, 295
HspAI GCGC 2 cut(s) 140, 209
KroI GCCGGC 1 cut(s) 279
KroNI GCCGGC 1 cut(s) 281
Kzo9I GATC 6 cut(s) 24, 29, 48, 63, 68, 132
LpnPI CCDG 6 cut(s) 255, 260, 293, 317, 318, 326
Lsp1109I GCAGC 1 cut(s) 281
MalI GATC 6 cut(s) 26, 31, 50, 65, 70, 134
MboI GATC 6 cut(s) 24, 29, 48, 63, 68, 132
MboII GAAGA 2 cut(s) 297, 310
MflI RGATCY 1 cut(s) 48
MluCI AATT 2 cut(s) 327, 370
MmeI TCCRAC 2 cut(s) 79, 204
MreI CGCCGGCG 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 279
MspI CCGG 2 cut(s) 247, 280
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 247
NaeI GCCGGC 1 cut(s) 281
NdeII GATC 6 cut(s) 24, 29, 48, 63, 68, 132
NgoMIV GCCGGC 1 cut(s) 279
NlaIII CATG 3 cut(s) 188, 269, 295
NsbI TGCGCA 1 cut(s) 210
NspI RCATGY 1 cut(s) 295
PciI ACATGT 1 cut(s) 291
PdiI GCCGGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 345
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 144, 271
PscI ACATGT 1 cut(s) 291
PsuI RGATCY 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 185
SatI GCNGC 2 cut(s) 143, 270
Sau3AI GATC 6 cut(s) 24, 29, 48, 63, 68, 132
SetI ASST 4 cut(s) 150, 306, 337, 378
SgrAI CRCCGGYG 1 cut(s) 279
Sse9I AATT 2 cut(s) 327, 370
SsiI CCGC 4 cut(s) 5, 143, 239, 277
StyI CCWWGG 1 cut(s) 376
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 327, 370
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 345
TseI GCWGC 1 cut(s) 269
Tth111I GACNNNGTC 1 cut(s) 185
XceI RCATGY 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.