Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Reverse (-)

64530996 .. 64532188

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG481100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCATTTAAAGCGCAGCATGCATATGATGGTGTCAAAGGGCTTGACGCACCGAAATCTTCAGCAAGAAGGAATGAAAGAAGTCAGAAGTACTGAAGCTTATCGATTGGGATGGACTGAAGGCCGACGCGGGGTTACTGGTTCTGCTGGCATAGAAGTTATTGCTTTTGTCTGCGGCAGTGCCACTTGGTTCGCGCATGTATACAGCTATATGTTACGTGTAATAAGGATTCATCCATGTGATACTATACCCGTTGGCCTCGTGGTTAGCGGAAAGGACATCACATTTTCGGCATTTTTGATGGTCCTCATCGCCTTCTCTCTCTCCTCATCCTACTCTGCTCTCCGCCAATCCTCCCCGATCCACGCGCCGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCTCCTCCGACCATGTCAACACCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGAAATCGAAGCACAAGGAGAAGAGCAAGTGGAGTAGAGCTGAAGTCGATTTCTCGCTGGTGTCGCCAGATGGAGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAGAGGAGAGAAGATGCGAGCTCCGACAAGGACGTGGTTCAGGTGGAGGAATGTAGTTTGAAATTTACTTTTAGTTTGATCTGGAAATTTTGGATTTTGGATCTTGAAATTGCAGATCCAGAGTTGCTTGAATTTGTTGATTTGGGAGGGAGTTCGGGAGTAGATTACTTCGCGGCGGAGCAAAGATTGGCGACGGTGAGGGCGGTGGTGAGGGGTGGGGTCGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

265

Amino Acids

29.49

Weight (kDa)

8.82

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	201
AccII	CGCG	4 cut(s)	129, 194, 368, 740
AciI	CCGC	8 cut(s)	129, 174, 270, 346, 371, 740, 743, 770
AclWI	GGATC	3 cut(s)	355, 675, 677
AcsI	RAATTY	3 cut(s)	629, 653, 698
AcuI	CTGAAG	4 cut(s)	44, 114, 138, 522
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	130, 533
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	628, 674, 698
AjiI	CACGTC	1 cut(s)	601
AluBI	AGCT	4 cut(s)	98, 207, 500, 588
AluI	AGCT	4 cut(s)	98, 207, 500, 588
Alw21I	GWGCWC	1 cut(s)	590
AlwI	GGATC	3 cut(s)	355, 675, 677
AoxI	GGCC	2 cut(s)	121, 256
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	3 cut(s)	629, 653, 698
AspLEI	GCGC	4 cut(s)	15, 196, 370, 445
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	4 cut(s)	548, 563, 775, 787
AvaII	GGWCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	590
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	590
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	4 cut(s)	22, 105, 295, 524
BisI	GCNGC	4 cut(s)	16, 175, 371, 741
BlsI	GCNGC	4 cut(s)	17, 176, 372, 742
BmcAI	AGTACT	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	304
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	304
BmsI	GCATC	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 533
Bse1I	ACTGG	1 cut(s)	142
BseCI	ATCGAT	1 cut(s)	103
BseGI	GGATG	3 cut(s)	116, 232, 329
BseLI	CCNNNNNNNGG	2 cut(s)	130, 533
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	6 cut(s)	316, 391, 394, 397, 400, 586
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	4 cut(s)	129, 194, 368, 740
BshFI	GGCC	2 cut(s)	123, 258
BshVI	ATCGAT	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	590
BslI	CCNNNNNNNGG	2 cut(s)	130, 533
BsnI	GGCC	2 cut(s)	123, 258
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	360, 645, 667, 682
BspACI	CCGC	8 cut(s)	129, 174, 270, 346, 371, 740, 743, 770
BspANI	GGCC	2 cut(s)	123, 258
BspDI	ATCGAT	1 cut(s)	103
BspFNI	CGCG	4 cut(s)	129, 194, 368, 740
BspPI	GGATC	3 cut(s)	355, 675, 677
BspQI	GCTCTTC	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	4 cut(s)	360, 645, 667, 682
BssNAI	GTATAC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	763
Bst6I	CTCTTC	2 cut(s)	476, 563
BstACI	GRCGYC	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	20, 148, 586
BstF5I	GGATG	3 cut(s)	116, 232, 329
BstFNI	CGCG	4 cut(s)	129, 194, 368, 740
BstHHI	GCGC	4 cut(s)	15, 196, 370, 445
BstKTI	GATC	4 cut(s)	363, 648, 670, 685
BstMBI	GATC	4 cut(s)	360, 645, 667, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 19, 523
BstNSI	RCATGY	2 cut(s)	22, 200
BstUI	CGCG	4 cut(s)	129, 194, 368, 740
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	667, 682
BstYI	RGATCY	2 cut(s)	667, 682
BstZ17I	GTATAC	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	123, 258
BsuTUI	ATCGAT	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	116, 232, 329
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	20, 148, 586
CfoI	GCGC	4 cut(s)	15, 196, 370, 445
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	103
CseI	GACGC	3 cut(s)	55, 135, 399
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	4 cut(s)	19, 197, 237, 419
CviJI	RGCY	7 cut(s)	42, 98, 123, 207, 258, 500, 588
CviKI_1	RGCY	7 cut(s)	42, 98, 123, 207, 258, 500, 588
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	4 cut(s)	362, 647, 669, 684
DpnII	GATC	4 cut(s)	360, 645, 667, 682
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	476, 563
EarI	CTCTTC	2 cut(s)	476, 563
EciI	GGCGGA	2 cut(s)	335, 758
Ecl136II	GAGCTC	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	588
Eco57I	CTGAAG	4 cut(s)	44, 114, 138, 522
EcoICRI	GAGCTC	1 cut(s)	588
EcoT22I	ATGCAT	2 cut(s)	6, 24
EcoT38I	GRGCYC	1 cut(s)	590
FaeI	CATG	4 cut(s)	22, 200, 240, 422
FatI	CATG	4 cut(s)	18, 196, 236, 418
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	4 cut(s)	16, 175, 371, 741
FokI	GGATG	3 cut(s)	123, 219, 316
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	16, 175, 371, 741
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	4 cut(s)	14, 195, 369, 444
GluI	GCNGC	4 cut(s)	16, 175, 371, 741
HaeIII	GGCC	2 cut(s)	123, 258
HgaI	GACGC	3 cut(s)	55, 135, 399
HhaI	GCGC	4 cut(s)	15, 196, 370, 445
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	22, 200, 240, 422
Hin6I	GCGC	4 cut(s)	13, 194, 368, 443
HinP1I	GCGC	4 cut(s)	13, 194, 368, 443
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	4 cut(s)	548, 563, 775, 787
Hpy166II	GTNNAC	2 cut(s)	202, 424
Hpy188I	TCNGA	3 cut(s)	86, 415, 592
Hpy188III	TCNNGA	4 cut(s)	649, 671, 686, 723
Hpy8I	GTNNAC	2 cut(s)	202, 424
Hpy99I	CGWCG	3 cut(s)	129, 393, 763
HpyAV	CCTTC	3 cut(s)	62, 113, 325
HpyCH4III	ACNGT	1 cut(s)	763
HpyCH4IV	ACGT	2 cut(s)	217, 600
HpyCH4V	TGCA	3 cut(s)	4, 22, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 19, 523
HpySE526I	ACGT	2 cut(s)	217, 600
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	22, 200, 240, 422
HspAI	GCGC	4 cut(s)	13, 194, 368, 443
Kzo9I	GATC	4 cut(s)	360, 645, 667, 682
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	593, 745
LpnPI	CCDG	7 cut(s)	123, 132, 503, 540, 593, 634, 699
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	571
MaeII	ACGT	2 cut(s)	217, 600
MaeIII	GTNAC	2 cut(s)	133, 213
MalI	GATC	4 cut(s)	362, 647, 669, 684
MboI	GATC	4 cut(s)	360, 645, 667, 682
MboII	GAAGA	4 cut(s)	50, 493, 580, 590
MflI	RGATCY	2 cut(s)	667, 682
MhlI	GDGCHC	1 cut(s)	590
MluCI	AATT	4 cut(s)	629, 653, 675, 698
MmeI	TCCRAC	2 cut(s)	438, 615
Mph1103I	ATGCAT	2 cut(s)	6, 24
MseI	TTAA	2 cut(s)	8, 796
MslI	CAYNNNNRTG	2 cut(s)	23, 237
MvnI	CGCG	4 cut(s)	129, 194, 368, 740
MwoI	GCNNNNNNNGC	3 cut(s)	10, 19, 523
NdeI	CATATG	1 cut(s)	24
NdeII	GATC	4 cut(s)	360, 645, 667, 682
NlaIII	CATG	4 cut(s)	22, 200, 240, 422
NsbI	TGCGCA	1 cut(s)	444
NsiI	ATGCAT	2 cut(s)	6, 24
NspI	RCATGY	2 cut(s)	22, 200
PaeI	GCATGC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	17, 176, 372, 742
Ppu21I	YACGTR	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	667, 682
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	23, 237
SacI	GAGCTC	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	2 cut(s)	8, 796
SatI	GCNGC	4 cut(s)	16, 175, 371, 741
Sau3AI	GATC	4 cut(s)	360, 645, 667, 682
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	590
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	23, 237
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	4 cut(s)	629, 653, 675, 698
SsiI	CCGC	8 cut(s)	129, 174, 270, 346, 371, 740, 743, 770
SstI	GAGCTC	1 cut(s)	590
TaaI	ACNGT	1 cut(s)	763
TaiI	ACGT	2 cut(s)	220, 603
TaqI	TCGA	4 cut(s)	103, 388, 467, 507
TasI	AATT	4 cut(s)	629, 653, 675, 698
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	3 cut(s)	177, 373, 743
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	8, 796
Tru9I	TTAA	2 cut(s)	8, 796
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	89, 221
TspRI	CASTG	1 cut(s)	184
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	3 cut(s)	629, 653, 698
XceI	RCATGY	2 cut(s)	22, 200
XmiI	GTMKAC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	91
Zsp2I	ATGCAT	2 cut(s)	6, 24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.