Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Forward (+)

36332208 .. 36335868

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG327200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATCGAATCAATGATTTACCAGATCGAAAGTCCTCATGGAGGAGGCTGCAAAGTCTCCGATCCCGAATCCTCCAAGAGATCCTCCAACTCCTTATCCGATCCCAAGTCCTCATCGCCTTCTCTCTCTCCTCCTCCTACTCTGCTCTCCGCCAATCTTCCCCAATCCACGCGCTGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCTCCTCCGACCATGTCAACAGCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGAAATCAAAGCACAAGGAGAAGGGAAAGTGGAGTAGAGCTGAAGTCGATTTCTCGCCGGTGTCGCTAGATGGAGGTGAGTTTGAGGTTGGTTATGATGGAGGTGAGTTTCAGGTTGGTGATGATGTGTATGTAAAGAGGAGAGAAGATGCGAGCTCTGACGAGGAAGTGGTTCAGGTGGAGGAATATAGTTTAAAATTTACTTTTAGTTTGATCTGGAAATTTTGGATTTTGGATCTTGAAATTGCAGATCCAGAGTTGCTTGAATTTGTTGATTTGGGAGGGAGTTCGGGAGTAGATTACTTCGCGGCGGAGCGAAGATTGGCGACGGTGAGGGCGGTGGTGAGGGGTGGGGTCGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

209

Amino Acids

23.61

Weight (kDa)

7.86

Isoelectric Point (pI)

71.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AccII	CGCG	2 cut(s)	173, 572
AciI	CCGC	4 cut(s)	151, 572, 575, 602
AclWI	GGATC	5 cut(s)	57, 76, 96, 507, 509
AcsI	RAATTY	3 cut(s)	461, 485, 530
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	506, 530
AluBI	AGCT	2 cut(s)	305, 420
AluI	AGCT	2 cut(s)	305, 420
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	5 cut(s)	57, 76, 96, 507, 509
ApeKI	GCWGC	2 cut(s)	49, 175
ApoI	RAATTY	3 cut(s)	461, 485, 530
Asp700I	GAANNNNTTC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	175, 250
AsuHPI	GGTGA	5 cut(s)	353, 380, 395, 607, 619
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	36, 162
BccI	CCATC	2 cut(s)	329, 356
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	3 cut(s)	50, 176, 573
BlsI	GCNGC	3 cut(s)	51, 177, 574
BmsI	GCATC	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseRI	GAGGAG	8 cut(s)	58, 121, 124, 196, 199, 202, 205, 418
BseXI	GCAGC	2 cut(s)	36, 162
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	173, 572
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp143I	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
BspACI	CCGC	4 cut(s)	151, 572, 575, 602
BspFNI	CGCG	2 cut(s)	173, 572
BspPI	GGATC	5 cut(s)	57, 76, 96, 507, 509
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssMI	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
BssNI	GRCGYC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	595
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	418
BstENI	CCTNNNNNAGG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	173, 572
BstHHI	GCGC	2 cut(s)	175, 250
BstKTI	GATC	7 cut(s)	28, 65, 84, 104, 480, 502, 517
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstUI	CGCG	2 cut(s)	173, 572
BstV1I	GCAGC	2 cut(s)	36, 162
BstX2I	RGATCY	3 cut(s)	81, 499, 514
BstYI	RGATCY	3 cut(s)	81, 499, 514
BtgZI	GCGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	2 cut(s)	175, 250
Cfr10I	RCCGGY	1 cut(s)	322
CseI	GACGC	1 cut(s)	204
CviAII	CATG	2 cut(s)	39, 224
CviJI	RGCY	4 cut(s)	49, 234, 305, 420
CviKI_1	RGCY	4 cut(s)	49, 234, 305, 420
DpnI	GATC	7 cut(s)	27, 64, 83, 103, 479, 501, 516
DpnII	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
DraI	TTTAAA	1 cut(s)	459
EciI	GGCGGA	2 cut(s)	140, 590
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	422
FaeI	CATG	2 cut(s)	42, 227
FaiI	YATR	5 cut(s)	40, 225, 360, 396, 453
FatI	CATG	2 cut(s)	38, 223
Fnu4HI	GCNGC	3 cut(s)	50, 176, 573
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	3 cut(s)	50, 176, 573
FspBI	CTAG	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	2 cut(s)	174, 249
GluI	GCNGC	3 cut(s)	50, 176, 573
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	2 cut(s)	175, 250
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	42, 227
Hin6I	GCGC	2 cut(s)	173, 248
HinP1I	GCGC	2 cut(s)	173, 248
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	4, 9, 69
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	5 cut(s)	353, 380, 395, 607, 619
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	4 cut(s)	62, 101, 220, 424
Hpy188III	TCNNGA	5 cut(s)	66, 481, 503, 518, 555
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	2 cut(s)	198, 595
HpyAV	CCTTC	2 cut(s)	130, 280
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	52, 178, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	42, 227
HspAI	GCGC	2 cut(s)	173, 248
Kzo9I	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	6 cut(s)	36, 336, 362, 425, 466, 531
Lsp1109I	GCAGC	2 cut(s)	36, 162
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	332
MalI	GATC	7 cut(s)	27, 64, 83, 103, 479, 501, 516
MboI	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
MboII	GAAGA	3 cut(s)	150, 422, 594
MflI	RGATCY	3 cut(s)	81, 499, 514
MhlI	GDGCHC	1 cut(s)	422
MluCI	AATT	4 cut(s)	461, 485, 507, 530
MmeI	TCCRAC	2 cut(s)	112, 243
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	2 cut(s)	458, 628
MspI	CCGG	1 cut(s)	323
MvnI	CGCG	2 cut(s)	173, 572
MwoI	GCNNNNNNNGC	1 cut(s)	328
NdeII	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
NlaIII	CATG	2 cut(s)	42, 227
NsbI	TGCGCA	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	4, 9, 69
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	51, 177, 574
Psp124BI	GAGCTC	1 cut(s)	422
PsuI	RGATCY	3 cut(s)	81, 499, 514
PsyI	GACNNNGTC	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	458, 628
SatI	GCNGC	3 cut(s)	50, 176, 573
Sau3AI	GATC	7 cut(s)	25, 62, 81, 101, 477, 499, 514
SduI	GDGCHC	1 cut(s)	422
SetI	ASST	8 cut(s)	183, 307, 343, 354, 370, 381, 422, 444
SfaNI	GCATC	1 cut(s)	403
SgrAI	CRCCGGYG	1 cut(s)	322
Sse9I	AATT	4 cut(s)	461, 485, 507, 530
SsiI	CCGC	4 cut(s)	151, 572, 575, 602
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	422
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	4 cut(s)	7, 28, 193, 312
TasI	AATT	4 cut(s)	461, 485, 507, 530
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	3 cut(s)	4, 9, 69
Tru1I	TTAA	2 cut(s)	458, 628
Tru9I	TTAA	2 cut(s)	458, 628
TseI	GCWGC	2 cut(s)	49, 175
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	40
XapI	RAATTY	3 cut(s)	461, 485, 530
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.