Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Forward (+)

83236194 .. 83236940

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGGAGGCTGCAAAGTCTCCGATCCGATCCCAAATCCTCCACTCTCTCTCTCCATTGTGCAATCCTCATGGCGGAGGCTGCAAAGTCTCCGATCCGATCCCAAATCCTCCAAGAGATCCTCCAACTCCTGATCCGATCCGATCCCAAGTCCTCATCGCCTTCTCTCTCTCCTCCTCCTACTCCACTCTCCGCCAATCCTCGTTGATCCACGCGTCGCACCTCCCTACACTTCGATGCCCTCCCTCCTCTTCCGACCATGTCAACACCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGAAATCGAAGCACAAGGATAAGGGCAAATGGAGTAGAGCTGAAGTCGATTTCTCACCGGTGTCGCCAGAGCTATCAAAGAAGAAGGAAAGGAAGAGAGACCATGAGAGGAAGGTGGCTATGCGTGGTGGTATGGCTAGCAAGAAGAGGCAGGTCGTTTACAAGAAGGTTGTGTATGATAGAGGTGAGTTTGAGGTTGGTGATGATGTGTATATGAAGAGGAGAAAAGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGGGATATCTTGAAATTGCAAATCCAGAGTGGCTTGAATTTGTTGATTTGGGAGGGAGTTCGGGAGTAGATTACTTTGCGGCGGTGCGAAGATTGGCGACGGTGAGGGTGGTGGTGAGGGGTGAGGTCGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

233

Amino Acids

25.79

Weight (kDa)

9.58

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	442
AccII	CGCG	1 cut(s)	215
AciI	CCGC	5 cut(s)	5, 75, 193, 641, 644
AclWI	GGATC	9 cut(s)	19, 24, 89, 94, 113, 128, 133, 138, 202
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	213
AgeI	ACCGGT	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	575, 599
AluBI	AGCT	3 cut(s)	341, 373, 537
AluI	AGCT	3 cut(s)	341, 373, 537
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	3 cut(s)	24, 94, 393
AlwI	GGATC	9 cut(s)	19, 24, 89, 94, 113, 128, 133, 138, 202
ApeKI	GCWGC	2 cut(s)	11, 81
ApoI	RAATTY	1 cut(s)	599
AsiGI	ACCGGT	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	6 cut(s)	348, 497, 512, 676, 688, 695
AsuNHI	GCTAGC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	68
BcoDI	GTCTC	3 cut(s)	24, 94, 393
BfaI	CTAG	1 cut(s)	438
BfuAI	ACCTGC	1 cut(s)	442
BisI	GCNGC	3 cut(s)	12, 82, 642
BlsI	GCNGC	3 cut(s)	13, 83, 643
BmsI	GCATC	2 cut(s)	227, 520
BmtI	GCTAGC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseRI	GAGGAG	4 cut(s)	163, 166, 238, 535
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	24, 94, 393
Bso31I	GGTCTC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
BspACI	CCGC	5 cut(s)	5, 75, 193, 641, 644
BspFNI	CGCG	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	442
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	9 cut(s)	19, 24, 89, 94, 113, 128, 133, 138, 202
BspTNI	GGTCTC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssMI	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	4 cut(s)	256, 389, 440, 512
BstC8I	GCNNGC	2 cut(s)	439, 535
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	9 cut(s)	27, 32, 97, 102, 121, 136, 141, 146, 210
BstMAI	GTCTC	3 cut(s)	24, 94, 393
BstMBI	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 81
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	439, 535
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	358
CseI	GACGC	1 cut(s)	204
CspAI	ACCGGT	1 cut(s)	358
CviAII	CATG	3 cut(s)	71, 260, 404
CviJI	RGCY	8 cut(s)	11, 81, 341, 373, 419, 437, 537, 595
CviKI_1	RGCY	8 cut(s)	11, 81, 341, 373, 419, 437, 537, 595
DpnI	GATC	9 cut(s)	26, 31, 96, 101, 120, 135, 140, 145, 209
DpnII	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
Eam1104I	CTCTTC	4 cut(s)	256, 389, 440, 512
EarI	CTCTTC	4 cut(s)	256, 389, 440, 512
EciI	GGCGGA	3 cut(s)	20, 90, 182
Ecl136II	GAGCTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	569
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	539
FaeI	CATG	3 cut(s)	74, 263, 407
FaiI	YATR	8 cut(s)	72, 261, 405, 422, 434, 477, 513, 515
FatI	CATG	3 cut(s)	70, 259, 403
Fnu4HI	GCNGC	3 cut(s)	12, 82, 642
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	12, 82, 642
FspBI	CTAG	1 cut(s)	438
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	3 cut(s)	12, 82, 642
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	74, 263, 407
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	6 cut(s)	348, 497, 512, 676, 688, 695
Hpy166II	GTNNAC	2 cut(s)	265, 460
Hpy188I	TCNGA	8 cut(s)	24, 29, 94, 99, 138, 143, 256, 541
Hpy188III	TCNNGA	4 cut(s)	131, 572, 587, 624
Hpy8I	GTNNAC	2 cut(s)	265, 460
Hpy99I	CGWCG	3 cut(s)	220, 545, 664
HpyAV	CCTTC	4 cut(s)	172, 379, 406, 460
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4V	TGCA	4 cut(s)	14, 63, 84, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 81
Hsp92II	CATG	3 cut(s)	74, 263, 407
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	6 cut(s)	144, 372, 381, 437, 542, 600
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	2 cut(s)	227, 520
MaeI	CTAG	1 cut(s)	438
MalI	GATC	9 cut(s)	26, 31, 96, 101, 120, 135, 140, 145, 209
MboI	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
MboII	GAAGA	6 cut(s)	243, 394, 406, 457, 529, 663
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	2 cut(s)	576, 599
MluI	ACGCGT	1 cut(s)	213
MmeI	TCCRAC	3 cut(s)	149, 279, 564
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	1 cut(s)	697
MslI	CAYNNNNRTG	1 cut(s)	235
MspI	CCGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	11, 81
NdeII	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	3 cut(s)	74, 263, 407
NsbI	TGCGCA	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	260
PinAI	ACCGGT	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	13, 83, 643
Psp124BI	GAGCTC	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	235
SacI	GAGCTC	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	3 cut(s)	12, 82, 642
Sau3AI	GATC	9 cut(s)	24, 29, 94, 99, 118, 133, 138, 143, 207
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	227, 520
SgrAI	CRCCGGYG	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	576, 599
SsiI	CCGC	5 cut(s)	5, 75, 193, 641, 644
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	539
TaaI	ACNGT	1 cut(s)	664
TaqI	TCGA	3 cut(s)	235, 308, 348
TasI	AATT	2 cut(s)	576, 599
TauI	GCSGC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TseI	GCWGC	2 cut(s)	11, 81
TspDTI	ATGAA	1 cut(s)	530
Tth111I	GACNNNGTC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.