RchiOBHm_Chr7g0225881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017015
Physical Location & Seq
Forward (+)
48844367 .. 48845911
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20231

Sequence Viewer

Length: 534 bp
ATGGACATTTCCTATTTAATATATTTTTTATTTTTTTCTCTATACTCTCTCTCACTCCATTGTGCAGTCCTCTCTCTCTCTCTCTCCACTGCGCAGTCCTCATGGCGGAGGCTGCACAGTCTCCGATCTGATCCCAAATCCTCCAAGAGATCCTCCAACTCTCTATCCAATCCCAAGTCCTCATTGCCTTTTCTCTCTCCTCCTCCTACTCTGCTCTCCTCCAATCCTCGCCGATCCACGTGCCGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTACTCCTCCTCCGACCATGTCAACACCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGCACAACCATCCGCCAGTCCGGCGTCCTCCTCCAAGCCAAGCAGCAGTCCGCCGGCGAAGAAACCTGTGGAAGAACCTATGGGTCTCCCTTATTTTCTCAATTTCAAGTTTTCTGGGATTCAAAGTTGGGGGCTTTCTCCCCAATTGCCTTGGTTTTGGGTAGATTTGGTTGTGCTTCCTTGAATGTTAGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.51

Weight (kDa)

10.19

Isoelectric Point (pI)

70.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 93, 320
AciI CCGC 4 cut(s) 106, 244, 349, 387
AclWI GGATC 3 cut(s) 125, 144, 228
AcvI CACGTG 1 cut(s) 240
AcyI GRCGYC 2 cut(s) 264, 360
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 3 cut(s) 443, 459, 520
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 125, 426
AlwI GGATC 3 cut(s) 125, 144, 228
ApeKI GCWGC 2 cut(s) 112, 379
AspLEI GCGC 2 cut(s) 94, 321
BbrPI CACGTG 1 cut(s) 240
BbvI GCAGC 2 cut(s) 99, 391
BccI CCATC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BcoDI GTCTC 2 cut(s) 125, 426
BfaI CTAG 1 cut(s) 532
BglI GCCNNNNNGGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 113, 244, 380
BlsI GCNGC 3 cut(s) 114, 245, 381
BsaAI YACGTR 1 cut(s) 240
BsaHI GRCGYC 2 cut(s) 264, 360
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 7 cut(s) 189, 192, 208, 264, 273, 276, 356
BseXI GCAGC 2 cut(s) 99, 391
BsgI GTGCAG 2 cut(s) 84, 98
BsiSI CCGG 2 cut(s) 357, 390
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 125, 426
Bso31I GGTCTC 1 cut(s) 426
Bsp143I GATC 4 cut(s) 125, 130, 149, 233
BspACI CCGC 4 cut(s) 106, 244, 349, 387
BspPI GGATC 3 cut(s) 125, 144, 228
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 125, 130, 149, 233
BssNI GRCGYC 2 cut(s) 264, 360
BssT1I CCWWGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 264, 360
BstBAI YACGTR 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 391
BstF5I GGATG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 94, 321
BstKTI GATC 4 cut(s) 128, 133, 152, 236
BstMAI GTCTC 2 cut(s) 125, 426
BstMBI GATC 4 cut(s) 125, 130, 149, 233
BstMWI GCNNNNNNNGC 2 cut(s) 112, 357
BstV1I GCAGC 2 cut(s) 99, 391
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 2 cut(s) 94, 321
Cfr10I RCCGGY 1 cut(s) 389
CseI GACGC 2 cut(s) 272, 349
CviAII CATG 2 cut(s) 102, 295
CviJI RGCY 4 cut(s) 112, 374, 470, 528
CviKI_1 RGCY 4 cut(s) 112, 374, 470, 528
DpnI GATC 4 cut(s) 127, 132, 151, 235
DpnII GATC 4 cut(s) 125, 130, 149, 233
EciI GGCGGA 3 cut(s) 121, 338, 376
Eco130I CCWWGG 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 426
Eco72I CACGTG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 486
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 2 cut(s) 105, 298
FaiI YATR 5 cut(s) 22, 43, 103, 296, 417
FatI CATG 2 cut(s) 101, 294
Fnu4HI GCNGC 3 cut(s) 113, 244, 380
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 113, 244, 380
FspBI CTAG 1 cut(s) 532
FspI TGCGCA 2 cut(s) 93, 320
GlaI GCGC 2 cut(s) 93, 320
GluI GCNGC 3 cut(s) 113, 244, 380
HapII CCGG 2 cut(s) 357, 390
HgaI GACGC 2 cut(s) 272, 349
HhaI GCGC 2 cut(s) 94, 321
Hin1I GRCGYC 2 cut(s) 264, 360
Hin1II CATG 2 cut(s) 105, 298
Hin6I GCGC 2 cut(s) 92, 319
HinP1I GCGC 2 cut(s) 92, 319
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 1 cut(s) 455
HpaII CCGG 2 cut(s) 357, 390
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 125, 130, 291
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 65, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 357
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 2 cut(s) 264, 360
Hsp92II CATG 2 cut(s) 105, 298
HspAI GCGC 2 cut(s) 92, 319
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 125, 130, 149, 233
LpnPI CCDG 5 cut(s) 365, 370, 403, 415, 436
Lsp1109I GCAGC 2 cut(s) 99, 391
MaeI CTAG 1 cut(s) 532
MaeII ACGT 1 cut(s) 239
MalI GATC 4 cut(s) 127, 132, 151, 235
MboI GATC 4 cut(s) 125, 130, 149, 233
MboII GAAGA 2 cut(s) 407, 420
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 1 cut(s) 149
MluCI AATT 2 cut(s) 437, 480
MmeI TCCRAC 2 cut(s) 180, 314
MreI CGCCGGCG 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 389
MseI TTAA 1 cut(s) 17
MspI CCGG 2 cut(s) 357, 390
MunI CAATTG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 112, 357
NaeI GCCGGC 1 cut(s) 391
NdeII GATC 4 cut(s) 125, 130, 149, 233
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 105, 298
NsbI TGCGCA 2 cut(s) 93, 320
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 114, 245, 381
PmaCI CACGTG 1 cut(s) 240
PmlI CACGTG 1 cut(s) 240
Ppu21I YACGTR 1 cut(s) 240
PspCI CACGTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 149
PsyI GACNNNGTC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 3 cut(s) 113, 244, 380
Sau3AI GATC 4 cut(s) 125, 130, 149, 233
SetI ASST 5 cut(s) 242, 251, 404, 416, 530
SgrAI CRCCGGYG 1 cut(s) 389
Sse9I AATT 2 cut(s) 437, 480
SsiI CCGC 4 cut(s) 106, 244, 349, 387
SspMI CTAG 1 cut(s) 532
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 261
TasI AATT 2 cut(s) 437, 480
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 94
TseI GCWGC 2 cut(s) 112, 379
TspRI CASTG 1 cut(s) 94
Tth111I GACNNNGTC 1 cut(s) 295
XspI CTAG 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.