Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Reverse (-)

21359635 .. 21360622

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGACATTTCCTATTTAATATTATTTTTATTTTTATTTTTTCTCTATACTCTCTCTCTCTCTCTCGATCTCTCTCCACTGCGCAGTCCTCATGGTGGAGGCTGCAAAGTCTCCGATCCGATCCCAAATCCTCCAAGAGATCCTCCAACTCCCGATCCGATCCCAAGTCCTCATCGTCTTCTCTCTCCTCCTCCTCCCACTCCGCTCTCCACCAATCCTCGTCGATCCACATGCCACACCTCCCTACACTTCGATGCCCTCCCTCCTCCTCCTCCAACCATGTCAACACCCCCAAATCTGTTGCGCAACACAAGAAATCAAAGAAATCGAAGCACAAGGCGAAGGGCAAGTGGAGTAGCTAGAGCTGAAGTCGATTTCTCGACGGTGTCGCCAGAGCGATCAAAGAAGAAGAAAAGGAAGAGAGGCCATAAGAGGAGGGTGGCTACGCGTGGTGGTATGGCTAGCAAGAAGAGGCTGGTCGTTTATAAGAAGGTTGTGTATGATGGAGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAGAGGAGAGAAGATGTGAGCGCCGACGAGGAAGTGGTTCAGGTGGAGGAATGGAGTTCGAGAGTAGATTACTTCGCGGAGGAGCGAAGATTGGCGACGGTGAGGGCGGTGGTGAGGGAGGGAATGAAAGTGTTGGAGAATGGAGAGCTGGAGTCTGGATTGGGTGATGAGATGAGAGTGGTGAACATTGTTTCGAAGATGAATTCGAATGCAAATGTAGGGATGAGGAGAATGGGAATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

262

Amino Acids

29.37

Weight (kDa)

9.99

Isoelectric Point (pI)

66.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc16I	TGCGCA	2 cut(s)	83, 305
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	2 cut(s)	448, 617
AciI	CCGC	3 cut(s)	203, 617, 647
AclWI	GGATC	6 cut(s)	110, 115, 134, 149, 154, 219
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	446
AluBI	AGCT	3 cut(s)	359, 365, 688
AluI	AGCT	3 cut(s)	359, 365, 688
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	6 cut(s)	110, 115, 134, 149, 154, 219
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	742
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	3 cut(s)	84, 306, 563
AsuHPI	GGTGA	6 cut(s)	521, 536, 652, 664, 716, 733
AsuII	TTCGAA	2 cut(s)	734, 746
AsuNHI	GCTAGC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	360, 462
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmsI	GCATC	1 cut(s)	244
BmtI	GCTAGC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	710
Bpu14I	TTCGAA	2 cut(s)	734, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	2 cut(s)	448, 617
BshFI	GGCC	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	426
Bsp119I	TTCGAA	2 cut(s)	734, 746
Bsp143I	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
BspACI	CCGC	3 cut(s)	203, 617, 647
BspANI	GGCC	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	448, 617
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	6 cut(s)	110, 115, 134, 149, 154, 219
BspT104I	TTCGAA	2 cut(s)	734, 746
BsrBI	CCGCTC	1 cut(s)	205
BssMI	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
Bst4CI	ACNGT	2 cut(s)	385, 640
Bst6I	CTCTTC	3 cut(s)	413, 464, 536
BstBI	TTCGAA	2 cut(s)	734, 746
BstC8I	GCNNGC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	768
BstFNI	CGCG	2 cut(s)	448, 617
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	3 cut(s)	84, 306, 563
BstKTI	GATC	8 cut(s)	70, 118, 123, 142, 157, 162, 227, 401
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
BstNSI	RCATGY	1 cut(s)	234
BstUI	CGCG	2 cut(s)	448, 617
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	768
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	463
CfoI	GCGC	3 cut(s)	84, 306, 563
CviAII	CATG	3 cut(s)	92, 231, 280
CviJI	RGCY	8 cut(s)	102, 359, 365, 426, 443, 461, 475, 688
CviKI_1	RGCY	8 cut(s)	102, 359, 365, 426, 443, 461, 475, 688
DpnI	GATC	8 cut(s)	69, 117, 122, 141, 156, 161, 226, 400
DpnII	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
Eam1104I	CTCTTC	3 cut(s)	413, 464, 536
EarI	CTCTTC	3 cut(s)	413, 464, 536
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	742
FaeI	CATG	3 cut(s)	95, 234, 283
FaiI	YATR	9 cut(s)	48, 93, 232, 281, 429, 458, 486, 501, 537
FatI	CATG	3 cut(s)	91, 230, 279
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	360, 462
FspI	TGCGCA	2 cut(s)	83, 305
GlaI	GCGC	3 cut(s)	83, 305, 562
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	426
HhaI	GCGC	3 cut(s)	84, 306, 563
Hin1II	CATG	3 cut(s)	95, 234, 283
Hin6I	GCGC	3 cut(s)	82, 304, 561
HinP1I	GCGC	3 cut(s)	82, 304, 561
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	1 cut(s)	692
HphI	GGTGA	6 cut(s)	521, 536, 652, 664, 716, 733
Hpy166II	GTNNAC	2 cut(s)	285, 724
Hpy188I	TCNGA	3 cut(s)	115, 120, 159
Hpy188III	TCNNGA	5 cut(s)	65, 152, 379, 600, 696
Hpy8I	GTNNAC	2 cut(s)	285, 724
Hpy99I	CGWCG	4 cut(s)	225, 385, 569, 640
HpyAV	CCTTC	2 cut(s)	336, 484
HpyCH4III	ACNGT	2 cut(s)	385, 640
HpyCH4V	TGCA	2 cut(s)	105, 752
Hsp92II	CATG	3 cut(s)	95, 234, 283
HspAI	GCGC	3 cut(s)	82, 304, 561
Kzo9I	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	5 cut(s)	405, 461, 566, 674, 681
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	360, 462
MalI	GATC	8 cut(s)	69, 117, 122, 141, 156, 161, 226, 400
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
MboII	GAAGA	9 cut(s)	170, 418, 421, 430, 481, 553, 563, 639, 748
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	2 cut(s)	742, 777
MluI	ACGCGT	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	3 cut(s)	170, 299, 654
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	754
MvnI	CGCG	2 cut(s)	448, 617
NdeII	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	3 cut(s)	95, 234, 283
NsbI	TGCGCA	2 cut(s)	83, 305
NspI	RCATGY	1 cut(s)	234
NspV	TTCGAA	2 cut(s)	734, 746
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	576
PflFI	GACNNNGTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	8 cut(s)	67, 115, 120, 139, 154, 159, 224, 398
SchI	GAGTC	1 cut(s)	701
SetI	ASST	8 cut(s)	242, 361, 367, 495, 511, 522, 585, 690
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	2 cut(s)	734, 746
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	742, 777
SsiI	CCGC	3 cut(s)	203, 617, 647
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	2 cut(s)	360, 462
TaaI	ACNGT	2 cut(s)	385, 640
TaqI	TCGA	9 cut(s)	66, 223, 252, 328, 372, 380, 599, 734, 746
TasI	AATT	2 cut(s)	742, 777
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	2 cut(s)	680, 755
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	742
XceI	RCATGY	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	2 cut(s)	360, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.