Rh7AG453900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017015
Physical Location & Seq
Reverse (-)
62291975 .. 62292412
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG453900.1

Sequence Viewer

Length: 438 bp
ATGGCGGAGGCTGCAAAGAGAGACCTACAAACACCCAAGAGATCCTCCAACTCCCGATCCGATCCCAAATCCTCATCGCCTTCTCTCTCCCCTCCTCCTACTCCGCTCTCCGCCACTCCTCGCCGATCCATGCGCCGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCTCTGACCATGTCAACACCCCTTAATCTGTTGCGCAACACAAGAAATCAAAGAAATCGAAGCACAAGGAGAAGAGCAAGTGGAGTAGATCTGAAGTCGATTTCTCGCCGGTGTCGCCAGAGCGATCAAAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGCTACGCGTGGTGGTATGGCTAGCAAGAAGAGGCAAGTCGTTTACAAGAAGGTTGTGTATGATGGAGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.77

Weight (kDa)

12.0

Isoelectric Point (pI)

104.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 206
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 1 cut(s) 345
AciI CCGC 4 cut(s) 5, 104, 111, 136
AclWI GGATC 4 cut(s) 36, 51, 56, 120
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 4 cut(s) 36, 51, 56, 120
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 11
AspLEI GCGC 2 cut(s) 135, 207
AsuHPI GGTGA 2 cut(s) 418, 433
AsuNHI GCTAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 359
BglII AGATCT 1 cut(s) 259
BisI GCNGC 2 cut(s) 12, 136
BlsI GCNGC 2 cut(s) 13, 137
BmtI GCTAGC 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 279
BseRI GAGGAG 5 cut(s) 84, 108, 156, 159, 162
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 6 cut(s) 41, 56, 61, 125, 259, 295
BspACI CCGC 4 cut(s) 5, 104, 111, 136
BspANI GGCC 1 cut(s) 323
BspFNI CGCG 1 cut(s) 345
BspOI GCTAGC 1 cut(s) 362
BspPI GGATC 4 cut(s) 36, 51, 56, 120
BspQI GCTCTTC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 279
BssMI GATC 6 cut(s) 41, 56, 61, 125, 259, 295
BssNI GRCGYC 1 cut(s) 156
Bst6I CTCTTC 3 cut(s) 238, 310, 361
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 360
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 135, 207
BstKTI GATC 6 cut(s) 44, 59, 64, 128, 262, 298
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 6 cut(s) 41, 56, 61, 125, 259, 295
BstMWI GCNNNNNNNGC 2 cut(s) 11, 285
BstUI CGCG 1 cut(s) 345
BstX2I RGATCY 2 cut(s) 41, 259
BstYI RGATCY 2 cut(s) 41, 259
BsuRI GGCC 1 cut(s) 323
BtgZI GCGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 135, 207
Cfr10I RCCGGY 1 cut(s) 279
CseI GACGC 1 cut(s) 164
CviAII CATG 3 cut(s) 130, 181, 325
CviJI RGCY 4 cut(s) 11, 323, 340, 358
CviKI_1 RGCY 4 cut(s) 11, 323, 340, 358
DpnI GATC 6 cut(s) 43, 58, 63, 127, 261, 297
DpnII GATC 6 cut(s) 41, 56, 61, 125, 259, 295
Eam1104I CTCTTC 3 cut(s) 238, 310, 361
EarI CTCTTC 3 cut(s) 238, 310, 361
EciI GGCGGA 2 cut(s) 20, 100
Eco31I GGTCTC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 284
FaeI CATG 3 cut(s) 133, 184, 328
FaiI YATR 6 cut(s) 131, 182, 326, 355, 398, 434
FatI CATG 3 cut(s) 129, 180, 324
Fnu4HI GCNGC 2 cut(s) 12, 136
Fsp4HI GCNGC 2 cut(s) 12, 136
FspBI CTAG 1 cut(s) 359
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 2 cut(s) 134, 206
GluI GCNGC 2 cut(s) 12, 136
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 280
HgaI GACGC 1 cut(s) 164
HhaI GCGC 2 cut(s) 135, 207
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 3 cut(s) 133, 184, 328
Hin6I GCGC 2 cut(s) 133, 205
HinP1I GCGC 2 cut(s) 133, 205
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HpaII CCGG 1 cut(s) 280
HphI GGTGA 2 cut(s) 418, 433
Hpy166II GTNNAC 2 cut(s) 186, 381
Hpy188I TCNGA 3 cut(s) 61, 177, 264
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 186, 381
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 90, 327, 381
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 285
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 3 cut(s) 133, 184, 328
HspAI GCGC 2 cut(s) 133, 205
Kzo9I GATC 6 cut(s) 41, 56, 61, 125, 259, 295
LguI GCTCTTC 1 cut(s) 238
LpnPI CCDG 2 cut(s) 293, 302
MaeI CTAG 1 cut(s) 359
MalI GATC 6 cut(s) 43, 58, 63, 127, 261, 297
MbiI CCGCTC 1 cut(s) 106
MboI GATC 6 cut(s) 41, 56, 61, 125, 259, 295
MboII GAAGA 5 cut(s) 255, 315, 318, 327, 378
MflI RGATCY 2 cut(s) 41, 259
MluI ACGCGT 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 280
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 11, 285
NdeII GATC 6 cut(s) 41, 56, 61, 125, 259, 295
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 3 cut(s) 133, 184, 328
NsbI TGCGCA 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 13, 137
PsuI RGATCY 2 cut(s) 41, 259
PsyI GACNNNGTC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 12, 136
Sau3AI GATC 6 cut(s) 41, 56, 61, 125, 259, 295
SetI ASST 6 cut(s) 27, 143, 338, 392, 408, 419
SgrAI CRCCGGYG 1 cut(s) 279
SsiI CCGC 4 cut(s) 5, 104, 111, 136
SspMI CTAG 1 cut(s) 359
TaqI TCGA 3 cut(s) 153, 229, 269
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 11
Tth111I GACNNNGTC 1 cut(s) 181
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.