Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Reverse (-)

19154625 .. 19157390

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTACTCTTCTCAGCAATCACGCTATTCTTGACCACAGCAATTATGTCTGCCCCTTTGATCGTGCCCCTGCTTTGGCCTCTCTTTTCAAAGGAGTACCTAATTTGAATACTCCGGACATAACGTGCAATGATCGCACAATTGCTGGTGGAATGGGTATCCACGTGCCTCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCTCCGACCATGTCAACACCCCCAAATCTGTTGCACAACACAAGAAATCAAAGAAATCGAAGCACAATGAGAAGGGCAAGTGGAGTAGAGCTGAAGTCGATTTCTCGTCGGTGTCGCCAGAGCGATCAAAGAAGAAGAAAAGGAAGAGAGGCCATGAGAGGAAGGTGGCTACGTGTGGTGGTATGGCTACCAAGAAGAGGCAGGTCGTTTACAAGAAGGTTGTGTATGATGGAGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAGAGGAGAGAAGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGGAATGTAGTTTGAAATTTACTTTCAGTTTGATCTGGATATTTTGGATTTTGGATCTTGAAATTGCAGATCCAGAGAGTTGCTTGAATTTGTTGATTTGGGAGGAAGTTCGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

211

Amino Acids

23.83

Weight (kDa)

8.89

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	115
AclWI	GGATC	2 cut(s)	579, 581
AcsI	RAATTY	2 cut(s)	533, 604
AcuI	CTGAAG	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	76, 402
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	91, 109, 532, 578, 604
AluBI	AGCT	2 cut(s)	296, 492
AluI	AGCT	2 cut(s)	296, 492
Alw21I	GWGCWC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	579, 581
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	2 cut(s)	78, 355
ApoI	RAATTY	2 cut(s)	533, 604
Asp700I	GAANNNNTTC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	164, 452, 467
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	494
BbrPI	CACGTG	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	494
BccI	CCATC	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	475
BsaAI	YACGTR	2 cut(s)	166, 378
BsaHI	GRCGYC	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 402
Bse3DI	GCAATG	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	76, 402
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	28
BseRI	GAGGAG	4 cut(s)	190, 193, 196, 490
BseSI	GKGCMC	1 cut(s)	70
BshFI	GGCC	2 cut(s)	80, 357
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	76, 402
BsnI	GGCC	2 cut(s)	80, 357
Bsp1286I	GDGCHC	2 cut(s)	70, 494
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
BspANI	GGCC	2 cut(s)	80, 357
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	2 cut(s)	579, 581
BsrDI	GCAATG	1 cut(s)	136
BssMI	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
BssNI	GRCGYC	1 cut(s)	190
Bst6I	CTCTTC	4 cut(s)	15, 344, 395, 467
BstACI	GRCGYC	1 cut(s)	190
BstBAI	YACGTR	2 cut(s)	166, 378
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	14
BstKTI	GATC	6 cut(s)	64, 136, 332, 552, 574, 589
BstMBI	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	571, 586
BstYI	RGATCY	2 cut(s)	571, 586
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	80, 357
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	490
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	2 cut(s)	215, 359
CviJI	RGCY	7 cut(s)	5, 80, 296, 357, 374, 392, 492
CviKI_1	RGCY	7 cut(s)	5, 80, 296, 357, 374, 392, 492
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	6 cut(s)	63, 135, 331, 551, 573, 588
DpnII	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
Eam1104I	CTCTTC	4 cut(s)	15, 344, 395, 467
EarI	CTCTTC	4 cut(s)	15, 344, 395, 467
Ecl136II	GAGCTC	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	494
FaeI	CATG	2 cut(s)	218, 362
FaiI	YATR	7 cut(s)	48, 122, 216, 360, 389, 432, 468
FatI	CATG	2 cut(s)	214, 358
FriOI	GRGCYC	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	80, 357
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	218, 362
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	164, 452, 467
Hpy166II	GTNNAC	2 cut(s)	220, 415
Hpy188I	TCNGA	2 cut(s)	211, 496
Hpy188III	TCNNGA	6 cut(s)	32, 116, 553, 575, 590, 629
Hpy8I	GTNNAC	2 cut(s)	220, 415
Hpy99I	CGWCG	3 cut(s)	192, 316, 500
HpyAV	CCTTC	3 cut(s)	271, 361, 415
HpyCH4IV	ACGT	3 cut(s)	125, 165, 377
HpyCH4V	TGCA	3 cut(s)	129, 239, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	3 cut(s)	125, 165, 377
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	218, 362
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
LmnI	GCTCC	1 cut(s)	497
LpnPI	CCDG	8 cut(s)	84, 129, 132, 336, 392, 497, 538, 603
LweI	GCATC	1 cut(s)	475
MaeII	ACGT	3 cut(s)	125, 165, 377
MalI	GATC	6 cut(s)	63, 135, 331, 551, 573, 588
MboI	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
MboII	GAAGA	6 cut(s)	349, 352, 361, 412, 484, 494
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	2 cut(s)	571, 586
MhlI	GDGCHC	2 cut(s)	70, 494
MluCI	AATT	6 cut(s)	43, 103, 141, 533, 579, 604
MmeI	TCCRAC	2 cut(s)	234, 519
MroI	TCCGGA	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	507
MspI	CCGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
NlaIII	CATG	2 cut(s)	218, 362
PdmI	GAANNNNTTC	1 cut(s)	507
PflFI	GACNNNGTC	1 cut(s)	215
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
Ppu21I	YACGTR	2 cut(s)	166, 378
Psp124BI	GAGCTC	1 cut(s)	494
PspCI	CACGTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	571, 586
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	494
Sau3AI	GATC	6 cut(s)	61, 133, 329, 549, 571, 586
SduI	GDGCHC	2 cut(s)	70, 494
SfaNI	GCATC	1 cut(s)	475
Sse9I	AATT	6 cut(s)	43, 103, 141, 533, 579, 604
SstI	GAGCTC	1 cut(s)	494
TaiI	ACGT	3 cut(s)	128, 168, 380
TaqI	TCGA	3 cut(s)	187, 263, 303
TasI	AATT	6 cut(s)	43, 103, 141, 533, 579, 604
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	533, 604
XmnI	GAANNNNTTC	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.