Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0017015

Physical Location & Seq

Genomic Coordinates Forward (+)

20622899 .. 20623363

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGGAGGCTGCAAAGTCTCCGATCCCAAATCCTCCAACTCCGATCCGATCCCAAGTCCTCATCGCCTTCTCTCTCTCCTCCTCCTACTCTGCTCTCCACCAATCCTCCCCGATCCACGCGCCGCACCTCCCTACACTTCGACGCCCTCCCTCCTCCTCCTCCTCCGACCATGTCAACACCCCCAAATCTGTTGTGCAACACAAGAAATCAAAGAAATCGAAGCACAAGGAGAAGAGCAAGTGGAGTAGAGCTGAAGTCGATTTCCCGCCGGTGTCGCCAGATGGAGGTGAGTTTGAGGTTGGTGATGATGTGTATGTGAAGAGGAGAGAAGATGCGAGCTCCGACGAGGAAGTGGTTCAGGTGGAGGAATGTAGTTTGAAATTTACTTTTAGTTTGATATGGAAATTTTGGATTTTGGATCTTGAAATTGCAGATCCAGAGTTGCTTGAATTTGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006277 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009987 GO:0010385 GO:0010468 GO:0010556 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA BAH PHD

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

5.68

Isoelectric Point (pI)

70.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017015)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0225881
rosa_laevigata	RLG00000007807 RLG00000022424 RLG00000030506
rosa_multiflora	Rmu_sc0011298.1_g000004
rosa_rugosa	Rorug07G0298300
rosa_samantha	Rh4BG123000 Rh4BG230400 Rh4CG152000 Rh5CG327200 Rh6CG044700 Rh6DG481100 Rh7AG453900
rosa_wichuraiana	Rw3G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	122
AciI	CCGC	2 cut(s)	125, 269
AclWI	GGATC	6 cut(s)	19, 40, 45, 109, 429, 431
AcsI	RAATTY	3 cut(s)	383, 407, 452
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	382, 428, 452
AluBI	AGCT	2 cut(s)	254, 342
AluI	AGCT	2 cut(s)	254, 342
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	6 cut(s)	19, 40, 45, 109, 429, 431
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	383, 407, 452
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	302, 317
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	344
BccI	CCATC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	24
BisI	GCNGC	2 cut(s)	12, 125
BlsI	GCNGC	2 cut(s)	13, 126
BmsI	GCATC	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseRI	GAGGAG	8 cut(s)	20, 70, 73, 145, 148, 151, 154, 340
Bsh1236I	CGCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
BspACI	CCGC	2 cut(s)	125, 269
BspFNI	CGCG	1 cut(s)	122
BspPI	GGATC	6 cut(s)	19, 40, 45, 109, 429, 431
BspQI	GCTCTTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssMI	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
BssNI	GRCGYC	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	230, 317
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	6 cut(s)	27, 48, 53, 117, 424, 439
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstUI	CGCG	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	421, 436
BstYI	RGATCY	2 cut(s)	421, 436
BtgZI	GCGATG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	271
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	3 cut(s)	11, 254, 342
CviKI_1	RGCY	3 cut(s)	11, 254, 342
DpnI	GATC	6 cut(s)	26, 47, 52, 116, 423, 438
DpnII	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
Eam1104I	CTCTTC	2 cut(s)	230, 317
EarI	CTCTTC	2 cut(s)	230, 317
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	1 cut(s)	176
FaiI	YATR	3 cut(s)	174, 318, 403
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	12, 125
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	12, 125
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	12, 125
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	302, 317
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	5 cut(s)	24, 45, 50, 169, 346
Hpy188III	TCNNGA	2 cut(s)	425, 440
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	2 cut(s)	147, 350
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	14, 199, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	285, 294, 347, 453
LweI	GCATC	1 cut(s)	325
MalI	GATC	6 cut(s)	26, 47, 52, 116, 423, 438
MboI	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
MboII	GAAGA	3 cut(s)	247, 334, 344
MflI	RGATCY	2 cut(s)	421, 436
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	4 cut(s)	383, 407, 429, 452
MmeI	TCCRAC	3 cut(s)	62, 192, 369
MroXI	GAANNNNTTC	1 cut(s)	357
MspI	CCGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
NlaIII	CATG	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	357
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	13, 126
Psp124BI	GAGCTC	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	421, 436
PsyI	GACNNNGTC	1 cut(s)	173
SacI	GAGCTC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	2 cut(s)	12, 125
Sau3AI	GATC	6 cut(s)	24, 45, 50, 114, 421, 436
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	6 cut(s)	132, 256, 292, 303, 344, 366
SfaNI	GCATC	1 cut(s)	325
SgrAI	CRCCGGYG	1 cut(s)	271
Sse9I	AATT	4 cut(s)	383, 407, 429, 452
SsiI	CCGC	2 cut(s)	125, 269
SstI	GAGCTC	1 cut(s)	344
TaqI	TCGA	3 cut(s)	142, 221, 261
TasI	AATT	4 cut(s)	383, 407, 429, 452
TauI	GCSGC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	11
Tth111I	GACNNNGTC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	383, 407, 452
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.