Rh7AG453700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0018449
Physical Location & Seq
Reverse (-)
62281475 .. 62283370
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG453700.1

Sequence Viewer

Length: 351 bp
ATGAGCTTCCTTCGCACTCATCTTCTTGCTCATTCCATAAGGGAAGCTGCTCAAGAAATTCGAGGGAGATTGAACATCTTCTTTATTATGGCAAGGATTGAAGAATGCTCAAACTTAGAATTTGGAGAGCGGTTCAGCGCCTCCGTGGAACAAGTCGAACCCATCTACTCACCTGGTCCGGAACAAGCACCTTCACCCGCTCGACTTCAAGTCCACTTTGTCTACATTACCCAGCACCAAATCTTCTTCAGCTCATGGTCTACCCGGAGCATATACTCCCTCCCATCATCACCGGAAGAAGACTGCCCAACCCTGATCCACCATTATGAGGACCCCGTGATGAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

5.61

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g35350 FvH4_5g35361
rosa_chinensis RchiOBHm_Chr7g0236701
rosa_laevigata RLG00000001067
rosa_multiflora Rmu_sc0002536.1_g000017
rosa_roxburghii Rroxscaffold_3G00224950
rosa_rugosa Rorug07G0298300
rosa_samantha Rh7AG453700 Rh7CG472200 Rh7DG441100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 130, 200
AccI GTMKAC 2 cut(s) 222, 260
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 2 cut(s) 130, 198
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 57, 119
AcuI CTGAAG 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 3 cut(s) 73, 101, 209
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 6, 47, 252
AluI AGCT 3 cut(s) 6, 47, 252
AlwI GGATC 1 cut(s) 310
Aor13HI TCCGGA 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 57, 119
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 176, 331
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 162, 186, 282
AvaII GGWCC 2 cut(s) 176, 331
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 170, 292
BciT130I CCWGG 1 cut(s) 174
BcnI CCSGG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 174, 265
Bme18I GGWCC 2 cut(s) 176, 331
BmeRI GACNNNNNGTC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 176, 331
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 174, 265
BpiI GAAGAC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 144
BsaWI WCCGGW 2 cut(s) 178, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 328
BseXI GCAGC 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 179, 265, 293
BslI CCNNNNNNNGG 1 cut(s) 328
BsmI GAATGC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 2 cut(s) 130, 198
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 1 cut(s) 310
BsrBI CCGCTC 2 cut(s) 130, 200
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 318
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 172, 263
BstV1I GCAGC 1 cut(s) 34
BstV2I GAAGAC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 144
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 176, 331
CsiI ACCWGGT 1 cut(s) 172
CviAII CATG 1 cut(s) 255
CviJI RGCY 3 cut(s) 6, 47, 252
CviKI_1 RGCY 3 cut(s) 6, 47, 252
DdeI CTNAG 1 cut(s) 115
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
DriI GACNNNNNGTC 1 cut(s) 209
Eam1105I GACNNNNNGTC 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 176, 331
Eco57I CTGAAG 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 258
FaiI YATR 6 cut(s) 38, 89, 256, 272, 274, 327
FatI CATG 1 cut(s) 254
FauI CCCGC 1 cut(s) 205
FblI GTMKAC 2 cut(s) 222, 260
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 141
HapII CCGG 3 cut(s) 179, 265, 293
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HpaII CCGG 3 cut(s) 179, 265, 293
HphI GGTGA 3 cut(s) 162, 186, 282
Hpy166II GTNNAC 3 cut(s) 214, 223, 261
Hpy188III TCNNGA 2 cut(s) 53, 179
Hpy8I GTNNAC 3 cut(s) 214, 223, 261
HpyAV CCTTC 2 cut(s) 20, 201
HpyCH4III ACNGT 1 cut(s) 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 1 cut(s) 138
Kpn2I TCCGGA 1 cut(s) 178
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 267
LpnPI CCDG 7 cut(s) 159, 186, 192, 245, 278, 306, 326
Lsp1109I GCAGC 1 cut(s) 34
MabI ACCWGGT 1 cut(s) 172
MalI GATC 1 cut(s) 317
MbiI CCGCTC 2 cut(s) 130, 200
MboI GATC 1 cut(s) 315
MboII GAAGA 7 cut(s) 14, 70, 113, 235, 238, 308, 311
MluCI AATT 2 cut(s) 57, 119
MnlI CCTC 4 cut(s) 56, 151, 290, 322
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 3 cut(s) 179, 265, 293
MspR9I CCNGG 2 cut(s) 174, 265
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 265
NdeII GATC 1 cut(s) 315
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 333
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 49
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 176, 331
PspPPI RGGWCCY 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 176, 331
ScrFI CCNGG 2 cut(s) 174, 265
SetI ASST 5 cut(s) 8, 49, 175, 193, 254
SexAI ACCWGGT 1 cut(s) 172
SinI GGWCC 2 cut(s) 176, 331
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 57, 119
SsiI CCGC 2 cut(s) 130, 198
StyD4I CCNGG 2 cut(s) 172, 263
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 61, 156, 202
TasI AATT 2 cut(s) 57, 119
TseI GCWGC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 176, 331
XapI RAATTY 2 cut(s) 57, 119
XmiI GTMKAC 2 cut(s) 222, 260
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.